7YWR

NMR structure of the N-terminal domain of Nsp8 from SARS-CoV-2

PDB DOI: https://doi.org/10.2210/pdb7YWR/pdb
BMRB: 51325

Classification: VIRAL PROTEIN
Organism(s): Severe acute respiratory syndrome coronavirus 2
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-02-14 Released: 2022-03-02
Deposition Author(s): Mompean, M., Laurents, D.V., Pantoja-Uceda, D., Trevino, M.A.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

NMR structure of the N-terminal domain of Nsp8 from SARS-CoV-2

Mompean, M., Laurents, D.V., Pantoja-Uceda, D., Trevino, M.A.

To be published.

Macromolecule Content

Total Structure Weight: 9.34 kDa
Atom Count: 652
Modelled Residue Count: 84
Deposited Residue Count: 84
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ORF1a polyprotein	A	84	Severe acute respiratory syndrome coronavirus 2	Mutation(s): 0 Gene Names: ORF1ab
UniProt
Find proteins for P0DTD1 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTD1 Go to UniProtKB: P0DTD1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0DTD1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-03-02

Deposition Author(s):

Pantoja-Uceda, D.

Funding Organization	Location	Grant Number
Other government	Spain	COV20/00764

Revision History (Full details and data files)

Version 1.0: 2022-03-02
Type: Initial release
Version 1.1: 2023-06-14
Changes: Other
Version 1.2: 2024-06-19
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.