Download MendeleyCrystal structure of PPARgamma ligand-binding domain in complex with N-CoR peptide and GW9662
Shang, J., Kojetin, D.J.To be published.
8FHE
Crystal structure of PPARgamma ligand-binding domain in complex with N-CoR peptide and GW9662
- PDB DOI: https://doi.org/10.2210/pdb8FHE/pdb
- Classification: TRANSCRIPTION
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2022-12-14 Released: 2024-03-20
- Funding Organization(s): National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.229
- R-Value Work: 0.197
- R-Value Observed: 0.199
Starting Model: experimental
View more details
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Peroxisome proliferator-activated receptor gamma | A [auth B] | 275 | Homo sapiens | Mutation(s): 0 Gene Names: PPARG, NR1C3 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P37231 (Homo sapiens) Explore P37231 Go to UniProtKB: P37231 | |||||
PHAROS: P37231 GTEx: ENSG00000132170 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P37231 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nuclear receptor corepressor 1 | B [auth D] | 23 | Homo sapiens | Mutation(s): 0 Gene Names: NCOR1, KIAA1047 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O75376 (Homo sapiens) Explore O75376 Go to UniProtKB: O75376 | |||||
PHAROS: O75376 GTEx: ENSG00000141027 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O75376 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GW9 (Subject of Investigation/LOI) Query on GW9 | C [auth B] | 2-chloro-5-nitro-N-phenylbenzamide C13 H9 Cl N2 O3 DNTSIBUQMRRYIU-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.229
- R-Value Work: 0.197
- R-Value Observed: 0.199
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 61.721 | α = 90 |
| b = 61.721 | β = 90 |
| c = 163.918 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| DIALS | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-03-20 Deposition Author(s): Shang, J., Kojetin, D.J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK) | United States | 6R01DK124870 |
Revision History (Full details and data files)
- Version 1.0: 2024-03-20
Type: Initial release - Version 1.1: 2024-10-23
Changes: Structure summary
