8UEJ

ssRNA phage PhiCb5 virion

  • Classification: VIRUS
  • Organism(s): Caulobacter phage phiCb5
  • Mutation(s): No 

  • Deposited: 2023-10-01 Released: 2024-05-15 
  • Deposition Author(s): Wang, Y., Zhang, J.
  • Funding Organization(s): National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Interplay between the Tight-adherence pilus and an RNA virus

Wang, Y.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Coat protein
A [auth AA],
AA [auth BY],
AB [auth DZ],
AC [auth GA],
AD [auth IA],
AE [auth JY],
AF [auth LZ],
B [auth AB],
BA [auth CC],
BB [auth EA],
BC [auth GB],
BD [auth IB],
BE [auth KC],
BF [auth MA],
C [auth AC],
CA [auth CD],
CB [auth EE],
CC [auth GC],
CD [auth IC],
CE [auth KD],
CF [auth ME],
D [auth AG],
DA [auth CE],
DB [auth EF],
DC [auth GG],
DD [auth IG],
DE [auth KE],
DF [auth MF],
E [auth AH],
EA [auth CI],
EB [auth EG],
EC [auth GH],
ED [auth IH],
EE [auth KI],
EF [auth MG],
F [auth AI],
FA [auth CJ],
FB [auth EK],
FC [auth GI],
FD [auth II],
FE [auth KJ],
FF [auth MK],
G [auth AM],
GA [auth CK],
GB [auth EL],
GC [auth GM],
GD [auth IM],
GE [auth KK],
GF [auth ML],
H [auth AN],
HA [auth CO],
HB [auth EM],
HC [auth GN],
HD [auth IN],
HE [auth KO],
HF [auth MM],
I [auth AO],
IA [auth CP],
IB [auth EQ],
IC [auth GO],
ID [auth IO],
IE [auth KP],
IF [auth MQ],
J [auth AS],
JA [auth CQ],
JB [auth ER],
JC [auth GS],
JD [auth IS],
JE [auth KQ],
JF [auth MR],
K [auth AT],
KA [auth CU],
KB [auth ES],
KC [auth GT],
KD [auth IT],
KE [auth KU],
KF [auth MS],
L [auth AU],
LA [auth CV],
LB [auth EW],
LC [auth GU],
LD [auth IU],
LE [auth KV],
LF [auth MW],
M [auth AY],
MA [auth CW],
MB [auth EX],
MC [auth GY],
MD [auth IY],
ME [auth KW],
MF [auth MX],
N [auth AZ],
NA [auth DA],
NB [auth EY],
NC [auth GZ],
ND [auth IZ],
NE [auth LA],
NF [auth NA],
O [auth BA],
OA [auth DB],
OB [auth FC],
OC [auth HC],
OD [auth JA],
OE [auth LB],
OF [auth NB],
P [auth BE],
PA [auth DC],
PB [auth FD],
PC [auth HD],
PD [auth JE],
PE [auth LC],
PF [auth NC],
Q [auth BF],
QA [auth DG],
QB [auth FE],
QC [auth HE],
QD [auth JF],
QE [auth LG],
QF [auth NG],
R [auth BG],
RA [auth DH],
RB [auth FI],
RC [auth HI],
RD [auth JG],
RE [auth LH],
RF [auth NH],
S [auth BK],
SA [auth DI],
SB [auth FJ],
SC [auth HJ],
SD [auth JK],
SE [auth LI],
SF [auth NI],
T [auth BL],
TA [auth DM],
TB [auth FK],
TC [auth HK],
TD [auth JL],
TE [auth LM],
TF [auth NM],
U [auth BM],
UA [auth DN],
UB [auth FO],
UC [auth HO],
UD [auth JM],
UE [auth LN],
UF [auth NN],
V [auth BQ],
VA [auth DO],
VB [auth FP],
VC [auth HP],
VD [auth JQ],
VE [auth LO],
VF [auth NO],
W [auth BR],
WA [auth DS],
WB [auth FQ],
WC [auth HQ],
WD [auth JR],
WE [auth LS],
X [auth BS],
XA [auth DT],
XB [auth FU],
XC [auth HU],
XD [auth JS],
XE [auth LT],
Y [auth BW],
YA [auth DU],
YB [auth FV],
YC [auth HV],
YD [auth JW],
YE [auth LU],
Z [auth BX],
ZA [auth DY],
ZB [auth FW],
ZC [auth HW],
ZD [auth JX],
ZE [auth LY]
122Caulobacter phage phiCb5Mutation(s): 0 
UniProt
Find proteins for D7RIC2 (Caulobacter phage phiCb5)
Explore D7RIC2 
Go to UniProtKB:  D7RIC2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupD7RIC2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Maturation proteinWF [auth M]372Caulobacter phage phiCb5Mutation(s): 0 
UniProt
Find proteins for D7RIC1 (Caulobacter phage phiCb5)
Explore D7RIC1 
Go to UniProtKB:  D7RIC1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupD7RIC1
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CA (Subject of Investigation/LOI)
Query on CA

Download Ideal Coordinates CCD File 
AG [auth AB]
AH [auth BK]
AI [auth CQ]
AJ [auth EQ]
AK [auth GA]
AG [auth AB],
AH [auth BK],
AI [auth CQ],
AJ [auth EQ],
AK [auth GA],
AL [auth HO],
AM [auth IZ],
AN [auth KQ],
AO [auth ME],
BG [auth AC],
BH [auth BK],
BI [auth CU],
BJ [auth EQ],
BK [auth GB],
BL [auth HP],
BM [auth JA],
BN [auth KU],
BO [auth ME],
CG [auth AC],
CH [auth BM],
CI [auth CV],
CJ [auth ER],
CK [auth GB],
CL [auth HP],
CM [auth JA],
CN [auth KU],
CO [auth MG],
DG [auth AH],
DH [auth BQ],
DI [auth CV],
DJ [auth ER],
DK [auth GC],
DL [auth HU],
DM [auth JE],
DN [auth KU],
DO [auth MG],
EG [auth AH],
EH [auth BQ],
EI [auth CW],
EJ [auth ES],
EK [auth GC],
EL [auth HU],
EM [auth JF],
EN [auth KV],
EO [auth MK],
FG [auth AI],
FH [auth BQ],
FI [auth DB],
FJ [auth ES],
FK [auth GH],
FL [auth HU],
FM [auth JK],
FN [auth KW],
FO [auth MK],
GG [auth AI],
GH [auth BR],
GI [auth DG],
GJ [auth EW],
GK [auth GI],
GL [auth HV],
GM [auth JK],
GN [auth KW],
GO [auth MK],
HG [auth AM],
HH [auth BS],
HI [auth DG],
HJ [auth EX],
HK [auth GI],
HL [auth HW],
HM [auth JL],
HN [auth LA],
HO [auth MQ],
IG [auth AN],
IH [auth BW],
II [auth DH],
IJ [auth EX],
IK [auth GM],
IL [auth HW],
IM [auth JQ],
IN [auth LB],
IO [auth MQ],
JG [auth AN],
JH [auth BX],
JI [auth DM],
JJ [auth FC],
JK [auth GM],
JL [auth IA],
JM [auth JR],
JN [auth LG],
JO [auth MR],
KG [auth AO],
KH [auth BY],
KI [auth DN],
KJ [auth FC],
KK [auth GM],
KL [auth IB],
KM [auth JR],
KN [auth LG],
KO [auth MR],
LG [auth AO],
LH [auth BY],
LI [auth DO],
LJ [auth FD],
LK [auth GO],
LL [auth IB],
LM [auth JW],
LN [auth LH],
LO [auth MS],
MG [auth AS],
MH [auth CC],
MI [auth DO],
MJ [auth FI],
MK [auth GO],
ML [auth IC],
MM [auth JW],
MN [auth LI],
MO [auth MS],
NG [auth AT],
NH [auth CC],
NI [auth DS],
NJ [auth FJ],
NK [auth GS],
NL [auth IG],
NM [auth JX],
NN [auth LI],
NO [auth MX],
OG [auth AT],
OH [auth CD],
OI [auth DS],
OJ [auth FJ],
OK [auth GT],
OL [auth IH],
OM [auth JY],
ON [auth LI],
OO [auth NA],
PG [auth AT],
PH [auth CE],
PI [auth DT],
PJ [auth FJ],
PK [auth GY],
PL [auth II],
PM [auth JY],
PN [auth LM],
PO [auth NA],
QG [auth AU],
QH [auth CE],
QI [auth DY],
QJ [auth FK],
QK [auth HC],
QL [auth IM],
QM [auth KC],
QN [auth LM],
QO [auth NC],
RG [auth AY],
RH [auth CI],
RI [auth DY],
RJ [auth FK],
RK [auth HC],
RL [auth IM],
RM [auth KC],
RN [auth LN],
RO [auth NG],
SG [auth AY],
SH [auth CI],
SI [auth DZ],
SJ [auth FO],
SK [auth HD],
SL [auth IO],
SM [auth KC],
SN [auth LN],
SO [auth NG],
TG [auth AZ],
TH [auth CI],
TI [auth EE],
TJ [auth FO],
TK [auth HD],
TL [auth IS],
TM [auth KD],
TN [auth LO],
TO [auth NG],
UG [auth AZ],
UH [auth CK],
UI [auth EE],
UJ [auth FO],
UK [auth HE],
UL [auth IS],
UM [auth KD],
UN [auth LO],
UO [auth NI],
VG [auth AZ],
VH [auth CK],
VI [auth EF],
VJ [auth FP],
VK [auth HI],
VL [auth IS],
VM [auth KI],
VN [auth LS],
VO [auth NI],
WG [auth BA],
WH [auth CO],
WI [auth EG],
WJ [auth FU],
WK [auth HI],
WL [auth IU],
WM [auth KJ],
WN [auth LT],
WO [auth NM],
XF [auth AA],
XG [auth BE],
XH [auth CO],
XI [auth EK],
XJ [auth FU],
XK [auth HK],
XL [auth IY],
XM [auth KK],
XN [auth LU],
XO [auth NN],
YF [auth AA],
YG [auth BG],
YH [auth CO],
YI [auth EM],
YJ [auth FV],
YK [auth HO],
YL [auth IZ],
YM [auth KO],
YN [auth LY],
YO [auth NO],
ZF [auth AB],
ZG [auth BK],
ZH [auth CP],
ZI [auth EM],
ZJ [auth FW],
ZK [auth HO],
ZL [auth IZ],
ZM [auth KO],
ZN [auth LY]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.17.1_3660:

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS)United States1R01GM141659

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-15
    Type: Initial release