8UKZ

Structure of P450Blt from Micromonospora sp. MW-13 with E238A Mutation

PDB DOI: https://doi.org/10.2210/pdb8UKZ/pdb

Classification: OXIDOREDUCTASE
Organism(s): Micromonospora sp. MW-13
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2023-10-15 Released: 2024-01-10
Deposition Author(s): Hansen, M.H., Cryle, M.J.
Funding Organization(s): Australian Research Council (ARC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free: 0.223
R-Value Work: 0.205
R-Value Observed: 0.205

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Structural Insights into a Side Chain Cross-Linking Biarylitide P450 from RiPP Biosynthesis

Hansen, M.H., Keto, A., Treisman, M., Sasi, V.M., Coe, L., Zhao, Y., Padva, L., Hess, C., Leichthammer, V., Machell, D.L., Schittenhelm, R.B., Jackson, C.J., Tailhades, J., Crusemann, M., De Voss, J.J., Krenske, E.H., Cryle, M.J.

(2024) ACS Catal : 812-826

DOI: https://doi.org/10.1021/acscatal.3c05417

Macromolecule Content

Total Structure Weight: 138.47 kDa
Atom Count: 8,993
Modelled Residue Count: 1,127
Deposited Residue Count: 1,260
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome P450-SU1	A, B, C	420	Micromonospora sp. MW-13	Mutation(s): 1 Gene Names: C5N14_21030 EC: 1.14
UniProt
Find proteins for A0A3E2YLT4 (Micromonospora sp. MW-13) Explore A0A3E2YLT4 Go to UniProtKB: A0A3E2YLT4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A3E2YLT4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
HEM Query on HEM Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain H [auth B] SDF format, chain M [auth C] MOL2 format, chain D [auth A] MOL2 format, chain H [auth B] MOL2 format, chain M [auth C] mmCIF format, chain D [auth A] mmCIF format, chain H [auth B] mmCIF format, chain M [auth C]	D [auth A], H [auth B], M [auth C]	PROTOPORPHYRIN IX CONTAINING FE C₃₄ H₃₂ Fe N₄ O₄ KABFMIBPWCXCRK-RGGAHWMASA-L		Interactions Focus chain D [auth A] Focus chain H [auth B] Focus chain M [auth C] Interactions & Density Focus chain D [auth A] Focus chain H [auth B] Focus chain M [auth C]
TFA Query on TFA Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain F [auth A] SDF format, chain K [auth B] SDF format, chain O [auth C] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A] MOL2 format, chain K [auth B] MOL2 format, chain O [auth C] mmCIF format, chain E [auth A] mmCIF format, chain F [auth A] mmCIF format, chain K [auth B] mmCIF format, chain O [auth C]	E [auth A], F [auth A], K [auth B], O [auth C]	trifluoroacetic acid C₂ H F₃ O₂ DTQVDTLACAAQTR-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain F [auth A] Focus chain K [auth B] Focus chain O [auth C] Interactions & Density Focus chain E [auth A] Focus chain F [auth A] Focus chain K [auth B] Focus chain O [auth C]
PEG Query on PEG Download Ideal Coordinates CCD File SDF format, chain I [auth B] MOL2 format, chain I [auth B] mmCIF format, chain I [auth B]	I [auth B]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain I [auth B] Interactions & Density Focus chain I [auth B]
ACT Query on ACT Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain J [auth B] SDF format, chain L [auth B] SDF format, chain N [auth C] MOL2 format, chain G [auth A] MOL2 format, chain J [auth B] MOL2 format, chain L [auth B] MOL2 format, chain N [auth C] mmCIF format, chain G [auth A] mmCIF format, chain J [auth B] mmCIF format, chain L [auth B] mmCIF format, chain N [auth C]	G [auth A], J [auth B], L [auth B], N [auth C]	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Interactions Focus chain G [auth A] Focus chain J [auth B] Focus chain L [auth B] Focus chain N [auth C] Interactions & Density Focus chain G [auth A] Focus chain J [auth B] Focus chain L [auth B] Focus chain N [auth C]