9B62 | pdb_00009b62

Human RANBP2/RAN(GTP)/RANGAP1-SUMO1/UBC9/CRM1/RAN(GTP) - composite map and model

  • Classification: TRANSPORT PROTEIN
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): Yes 

  • Deposited: 2024-03-23 Released: 2024-10-16 
  • Deposition Author(s): Lima, C.D., DiMattia, M.A.
  • Funding Organization(s): Howard Hughes Medical Institute (HHMI), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Structure and activities of a human RANBP2/RAN(GTP)/RANGAP1-SUMO1/UBC9/CRM1/RAN(GTP) complex

Baytshtok, V., DiMattia, M.A., Lima, C.D.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Exportin-11,074Homo sapiensMutation(s): 0 
Gene Names: XPO1, CRM1
UniProt & NIH Common Fund Data Resources
Find proteins for O14980 (Homo sapiens)
Explore O14980 
Go to UniProtKB:  O14980
PHAROS:  O14980
GTEx:  ENSG00000082898 
Entity Groups  
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UniProt GroupO14980
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
GTP-binding nuclear protein Ran
B, F
222Homo sapiensMutation(s): 1 
Gene Names: RAN, ARA24, OK/SW-cl.81
EC: 3.6.5
UniProt & NIH Common Fund Data Resources
Find proteins for P62826 (Homo sapiens)
Explore P62826 
Go to UniProtKB:  P62826
PHAROS:  P62826
GTEx:  ENSG00000132341 
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UniProt GroupP62826
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
SUMO-conjugating enzyme UBC9161Homo sapiensMutation(s): 0 
Gene Names: UBE2I, UBC9, UBCE9
EC: 2.3.2
UniProt & NIH Common Fund Data Resources
Find proteins for P63279 (Homo sapiens)
Explore P63279 
Go to UniProtKB:  P63279
PHAROS:  P63279
GTEx:  ENSG00000103275 
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UniProt GroupP63279
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Small ubiquitin-related modifier 1101Homo sapiensMutation(s): 1 
Gene Names: SUMO1, SMT3C, SMT3H3, UBL1, OK/SW-cl.43
UniProt & NIH Common Fund Data Resources
Find proteins for P63165 (Homo sapiens)
Explore P63165 
Go to UniProtKB:  P63165
PHAROS:  P63165
GTEx:  ENSG00000116030 
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UniProt GroupP63165
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  • Reference Sequence
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
E3 SUMO-protein ligase RanBP2619Homo sapiensMutation(s): 0 
Gene Names: RANBP2, NUP358
EC: 2.3.2
UniProt & NIH Common Fund Data Resources
Find proteins for P49792 (Homo sapiens)
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PHAROS:  P49792
GTEx:  ENSG00000153201 
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UniProt GroupP49792
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Ran GTPase-activating protein 1591Homo sapiensMutation(s): 0 
Gene Names: RANGAP1, KIAA1835, SD
UniProt & NIH Common Fund Data Resources
Find proteins for P46060 (Homo sapiens)
Explore P46060 
Go to UniProtKB:  P46060
PHAROS:  P46060
GTEx:  ENSG00000100401 
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UniProt GroupP46060
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.19.2_4158:

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Howard Hughes Medical Institute (HHMI)United States--
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM118080

Revision History  (Full details and data files)

  • Version 1.0: 2024-10-16
    Type: Initial release