9FCR | pdb_00009fcr

Crystal structure of RBBP9 with spacegroup p212121

• PDB DOI: https://doi.org/10.2210/pdb9FCR/pdb

• Classification: CELL CYCLE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2024-05-15 Released: 2024-09-11 
• Deposition Author(s): Gorrec, F., Bellini, D.
• Funding Organization(s): Medical Research Council (MRC, United Kingdom)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.37 Å
• R-Value Free: 
  0.234 (Depositor), 0.239 (DCC) 
• R-Value Work: 
  0.202 (Depositor), 0.211 (DCC) 
• R-Value Observed: 
  0.203 (Depositor) 

Starting Model: experimental

Literature

A generic cross-seeding approach to protein crystallization

Caspy, I., Tang, S., Bellini, D., Gorrec, F.

(2025) J Appl Cryst 58

• DOI: https://doi.org/10.1107/S1600576725000457

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 42.05 kDa 
• Atom Count: 3,307 
• Modelled Residue Count: 366 
• Deposited Residue Count: 372 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine hydrolase RBBP9	A, B	186	Homo sapiens	Mutation(s): 0  Gene Names: RBBP9, BOG, RBBP10 EC: 3
UniProt & NIH Common Fund Data Resources
Find proteins for O75884 (Homo sapiens) Explore O75884  Go to UniProtKB:  O75884
PHAROS:  O75884 GTEx:  ENSG00000089050

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.37 Å
• R-Value Free:  0.234 (Depositor), 0.239 (DCC) 
• R-Value Work:  0.202 (Depositor), 0.211 (DCC) 
• R-Value Observed: 0.203 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.74	α = 90
b = 82.55	β = 90
c = 58.74	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PHENIX	refinement
DIALS	data reduction
DIALS	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-09-11 
Deposition Author(s): Gorrec, F., Bellini, D.

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Funding Organization	Location	Grant Number
Medical Research Council (MRC, United Kingdom)	United Kingdom	--

Revision History  

• Version 1.0: 2024-09-11
  Type: Initial release
  
• Version 1.1: 2025-03-26
  Changes: Database references, Structure summary