2ODJ

Crystal structure of the outer membrane protein OprD from Pseudomonas aeruginosa

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2odja1	Membrane and cell surface proteins and peptides	Transmembrane beta-barrels	Outer membrane carboxylate (Occ) channels	OccD-like (OprD-like)	OprD porin (OccD1)	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
A	d2odja3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
A	d2odja2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
B	d2odjb1	Membrane and cell surface proteins and peptides	Transmembrane beta-barrels	Outer membrane carboxylate (Occ) channels	OccD-like (OprD-like)	OprD porin (OccD1)	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
B	d2odjb3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
B	d2odjb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	OprD	e2odjA1	A: beta barrels	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: OprD	ECOD (1.6)
B	OprD	e2odjB1	A: beta barrels	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: OprD	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (4.3.0)
B	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF03573	outer membrane porin, OprD family (OprD)	outer membrane porin, OprD family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Porin D	wide pore channel activity passive transmembrane transporter activity channel activity porin activity transporter activity transmembrane transporter activity peptidase activity serine hydrolase activity catalytic activity, acting on a protein serine-type peptidase activity hydrolase activity catalytic activity	proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process amino acid transport localization basic amino acid transport transport establishment of localization monoatomic ion transport	membrane outer membrane cellular anatomical entity protein-containing complex pore complex membrane protein complex cell periphery cell outer membrane external encapsulating structure cell envelope

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR023614	Porin domain superfamily	Homologous Superfamily
A, B	IPR005318	Outer membrane porin, bacterial	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B	OPM	Transmembrane	Beta-barrel transmembrane	OprD/AlgE superfamily (n=18,S=22)	Outer membrane porin (Opr)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B	MemProtMD	Annotated as membrane protein by MemProtMD

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.