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The crystal structure of Sporosarcina pasteurii urease in complex with citrate External Resource: Annotation Chains Domain Info Class Fold Superfamily Family Domain Species Provenance Source (Version) C d4ac7c1 All beta proteins Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases alpha-Subunit of urease alpha-Subunit of urease (Sporosarcina pasteurii ) [TaxId: 1474 ], SCOPe (2.08) C d4ac7c2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Metallo-dependent hydrolases alpha-subunit of urease, catalytic domain alpha-subunit of urease, catalytic domain (Sporosarcina pasteurii ) [TaxId: 1474 ], SCOPe (2.08) A d4ac7a_ Alpha and beta proteins (a+b) Urease, gamma-subunit Urease, gamma-subunit Urease, gamma-subunit Urease, gamma-subunit (Sporosarcina pasteurii ) [TaxId: 1474 ], SCOPe (2.08) B d4ac7b_ All beta proteins beta-clip Urease, beta-subunit Urease, beta-subunit automated matches (Sporosarcina pasteurii ) [TaxId: 1474 ], SCOPe (2.08)
Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) C SCOP2B Superfamily Metallo-dependent hydrolases 8043430 3000428 SCOP2B (2022-06-29) C SCOP2B Superfamily Metallo-dependent hydrolases 8043430 3000428 SCOP2B (2022-06-29) C SCOP2B Superfamily Composite domain of metallo-dependent hydrolases 8043172 3000176 SCOP2B (2022-06-29) C SCOP2B Superfamily Composite domain of metallo-dependent hydrolases 8043172 3000176 SCOP2B (2022-06-29) A SCOP2B Superfamily Urease, gamma-subunit 8034247 3001945 SCOP2B (2022-06-29) B SCOP2B Superfamily Urease, beta-subunit 8043131 3001949 SCOP2B (2022-06-29)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) C Urease_alpha e4ac7C1 A: beta sandwiches X: Composite domain of metallo-dependent hydrolases (From Topology) H: Composite domain of metallo-dependent hydrolases (From Topology) T: Composite domain of metallo-dependent hydrolases F: Urease_alpha ECOD (1.6) C Amidohydro_1_N e4ac7C2 A: a/b barrels X: TIM beta/alpha-barrel H: TIM barrels (From Topology) T: TIM barrels F: Amidohydro_1_N ECOD (1.6) A Urease_gamma e4ac7A1 A: a+b two layers X: Urease, gamma-subunit (From Topology) H: Urease, gamma-subunit (From Topology) T: Urease, gamma-subunit F: Urease_gamma ECOD (1.6) B Urease_beta e4ac7B1 A: beta sandwiches X: Immunoglobulin-like beta-sandwich H: Urease, beta-subunit (From Topology) T: Urease, beta-subunit F: Urease_beta ECOD (1.6)
Chains Accession Name Description Comments Source PF00449 Urease alpha-subunit, N-terminal domain (Urease_alpha) Urease alpha-subunit, N-terminal domain The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit. Domain PF01979 Amidohydrolase family (Amidohydro_1) Amidohydrolase family This family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisatio ... This family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source [2]. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyse the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit [3]. Dihydroorotases (EC:3.5.2.3) are also included [4-5]. Less Domain PF00547 Urease, gamma subunit (Urease_gamma) Urease, gamma subunit Urease is a nickel-binding enzyme that catalyses the hydrolysis of urea to carbon dioxide and ammonia. Domain PF00699 Urease beta subunit (Urease_beta) Urease beta subunit This subunit is known as alpha in Heliobacter. Domain
Chains Polymer Molecular Function Biological Process Cellular Component UREASE SUBUNIT ALPHA UREASE SUBUNIT GAMMA UREASE SUBUNIT BETA
Protein Modification Annotation Modified Residue(s) Chain Residue(s) Description KCX Parent Component: LYS CXM Parent Component: MET RESID :  AA0363 , AA0493 PSI-MOD :  N-carboxy-L-methionine MOD:00368 , N-(dihydroxymethyl)-L-methionine (fMet) MOD:01446 , N-(dihydroxymethyl)-L-methionine (Met) MOD:01447