4X3S

Crystal structure of chromobox homology 7 (CBX7) with SETDB1-1170me3 Peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Chromo domain-like	8072501	3000161	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Chromo domain-like	8072501	3000161	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Chromo	e4x3sA1	A: beta barrels	X: SH3	H: Chromo domain-like (From Topology)	T: Chromo domain-like	F: Chromo	ECOD (1.6)
B	Chromo	e4x3sB1	A: beta barrels	X: SH3	H: Chromo domain-like (From Topology)	T: Chromo domain-like	F: Chromo	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)
B	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00385	Chromo (CHRromatin Organisation MOdifier) domain (Chromo)	Chromo (CHRromatin Organisation MOdifier) domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Chromobox protein homolog 7	chromatin binding binding RNA binding organic cyclic compound binding nucleic acid binding single-stranded RNA binding methylated histone binding protein binding modification-dependent protein binding histone binding methylation-dependent protein binding	developmental process skin development gland development animal organ development anatomical structure development sebaceous gland development regulation of cellular process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process DNA-templated transcription positive regulation of metabolic process regulation of RNA metabolic process transcription by RNA polymerase II developmental process skin development gland development animal organ development anatomical structure development sebaceous gland development regulation of cellular process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process DNA-templated transcription positive regulation of metabolic process regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II regulation of DNA-templated transcription elongation regulation of biological process positive regulation of nucleobase-containing compound metabolic process regulation of transcription elongation by RNA polymerase II cellular metabolic process primary metabolic process regulation of cellular metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process transcription elongation by RNA polymerase II cellular biosynthetic process positive regulation of DNA-templated transcription positive regulation of transcription elongation by RNA polymerase II positive regulation of biological process RNA metabolic process positive regulation of cellular metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of biosynthetic process positive regulation of DNA-templated transcription, elongation positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process biological regulation regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process DNA-templated transcription elongation positive regulation of RNA biosynthetic process cellular process positive regulation of cellular biosynthetic process cellular component organization chromatin organization cellular component organization or biogenesis	membrane-bounded organelle intracellular organelle protein-containing complex intracellular anatomical structure organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle cellular anatomical entity PcG protein complex intracellular non-membrane-bounded organelle chromatin chromosome heterochromatin membrane-bounded organelle intracellular organelle protein-containing complex intracellular anatomical structure organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle cellular anatomical entity PcG protein complex intracellular non-membrane-bounded organelle chromatin chromosome heterochromatin non-membrane-bounded organelle PRC1 complex ubiquitin ligase complex catalytic complex transferase complex nuclear ubiquitin ligase complex intracellular protein-containing complex
C, D	SETDB1-1170me3 Peptide	protein-lysine N-methyltransferase activity histone H3 methyltransferase activity catalytic activity, acting on a protein transferase activity, transferring one-carbon groups histone H3K9 methyltransferase activity transferase activity histone H3K9 trimethyltransferase activity S-adenosylmethionine-dependent methyltransferase activity histone methyltransferase activity lysine N-methyltransferase activity protein methyltransferase activity histone modifying activity N-methyltransferase activity methyltransferase activity catalytic activity protein-lysine N-methyltransferase activity histone H3 methyltransferase activity catalytic activity, acting on a protein transferase activity, transferring one-carbon groups histone H3K9 methyltransferase activity transferase activity histone H3K9 trimethyltransferase activity S-adenosylmethionine-dependent methyltransferase activity histone methyltransferase activity lysine N-methyltransferase activity protein methyltransferase activity histone modifying activity N-methyltransferase activity methyltransferase activity catalytic activity histone H3K9 monomethyltransferase activity chromatin binding binding histone H3K9me2 methyltransferase activity promoter-specific chromatin binding DNA binding organic cyclic compound binding nucleic acid binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	methylation metabolic process cellular component organization chromatin organization cellular process heterochromatin organization cellular component organization or biogenesis positive regulation of organelle organization regulation of cellular process negative regulation of biological process negative regulation of cellular metabolic process cellular component biogenesis regulation of heterochromatin formation regulation of biological process methylation metabolic process cellular component organization chromatin organization cellular process heterochromatin organization cellular component organization or biogenesis positive regulation of organelle organization regulation of cellular process negative regulation of biological process negative regulation of cellular metabolic process cellular component biogenesis regulation of heterochromatin formation regulation of biological process regulation of chromatin organization regulation of DNA methylation-dependent heterochromatin formation cellular metabolic process negative regulation of metabolic process regulation of cellular metabolic process regulation of chromosome organization regulation of organelle organization negative regulation of cellular biosynthetic process positive regulation of chromosome organization regulation of gene expression negative regulation of gene expression constitutive heterochromatin formation biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process regulation of cellular component organization positive regulation of cellular component organization cellular biosynthetic process positive regulation of biological process positive regulation of DNA methylation-dependent heterochromatin formation positive regulation of heterochromatin formation negative regulation of cellular process DNA methylation-dependent heterochromatin formation positive regulation of chromatin organization chromatin remodeling positive regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process heterochromatin formation positive regulation of cellular component biogenesis epigenetic regulation of gene expression biological regulation chromosome organization regulation of macromolecule metabolic process gene expression regulation of cellular component biogenesis macromolecule biosynthetic process regulation of cellular biosynthetic process organelle organization negative regulation of biosynthetic process viral life cycle negative regulation of RNA biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process primary metabolic process single stranded viral RNA replication via double stranded DNA intermediate viral genome replication negative regulation of RNA metabolic process regulation of single stranded viral RNA replication via double stranded DNA intermediate RNA metabolic process negative regulation of single stranded viral RNA replication via double stranded DNA intermediate RNA biosynthetic process nucleic acid biosynthetic process negative regulation of viral process viral RNA genome replication viral process regulation of RNA biosynthetic process negative regulation of viral genome replication nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of viral process regulation of viral life cycle regulation of viral genome replication	membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle intracellular membrane-bounded organelle cellular anatomical entity cytoplasm nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen intracellular non-membrane-bounded organelle membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle intracellular membrane-bounded organelle cellular anatomical entity cytoplasm nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen intracellular non-membrane-bounded organelle chromosome non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR000953	Chromo/chromo shadow domain	Domain
A, B	IPR023780	Chromo domain	Domain
A, B	IPR016197	Chromo-like domain superfamily	Homologous Superfamily
A, B	IPR033773	CBX family C-terminal motif	Conserved Site
A, B	IPR023779	Chromo domain, conserved site	Conserved Site
A, B	IPR043000	Chromobox protein homolog 7	Family
A, B	IPR017984	Chromo domain subgroup	Domain
C, D	IPR040880	Domain of unknown function DUF5604	Domain
C, D	IPR007728	Pre-SET domain	Domain
C, D	IPR046341	SET domain superfamily	Homologous Superfamily
C, D	IPR002999	Tudor domain	Domain
C, D	IPR001214	SET domain	Domain
C, D	IPR047232	Histone-lysine N-methyltransferase SETDB1/2-like, methyl-CpG binding domains	Domain
C, D	IPR003616	Post-SET domain	Domain
C, D	IPR016177	DNA-binding domain superfamily	Homologous Superfamily
C, D	IPR025796	Histone-lysine N-methyltransferase SETDB1	Family
C, D	IPR051516	Histone-lysine N-methyltransferase SETDB	Family
C, D	IPR041291	Histone methyltransferase, Tudor domain 1	Domain
C, D	IPR001739	Methyl-CpG DNA binding	Domain
C, D	IPR041292	Histone methyltransferase, Tudor domain 2	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, D	Pharos: Q15047	melanoma malignant mesothelioma prostate cancer cutaneous melanoma schizophrenia Anhedonia atypical teratoid rhabdoid tumor lung cancer medulloblastoma neuroblastoma osteosarcoma primary hyperoxaluria type 1 squamous cell carcinoma astrocytic tumor malignant ependymoma melanoma malignant mesothelioma prostate cancer cutaneous melanoma schizophrenia Anhedonia atypical teratoid rhabdoid tumor lung cancer medulloblastoma neuroblastoma osteosarcoma primary hyperoxaluria type 1 squamous cell carcinoma astrocytic tumor malignant ependymoma oligodendroglioma ovarian cancer primitive neuroectodermal tumor psoriasis attention deficit hyperactivity disorder, inattentive type large cell medulloblastoma metabolic syndrome X osteoporosis pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia