5T9M
Structure of rabbit RyR1 (Ca2+-only dataset, class 1)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth J] | SCOP2B Superfamily | Rotamase-like | 8034864 | 3000622 | SCOP2B (2022-06-29) |
A [auth F] | SCOP2B Superfamily | Rotamase-like | 8034864 | 3000622 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Rotamase-like | 8034864 | 3000622 | SCOP2B (2022-06-29) |
C [auth H] | SCOP2B Superfamily | Rotamase-like | 8034864 | 3000622 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth J] | FKBP_C | e5t9mJ1 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: FKBP_C | ECOD (1.6) |
A [auth F] | FKBP_C | e5t9mF1 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: FKBP_C | ECOD (1.6) |
B [auth A] | FKBP_C | e5t9mA1 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: FKBP_C | ECOD (1.6) |
C [auth H] | FKBP_C | e5t9mH1 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: FKBP_C | ECOD (1.6) |
G [auth I] | SPRY | e5t9mI8 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: SPRY | ECOD (1.6) |
G [auth I] | Ins145_P3_rec | e5t9mI10 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: Ins145_P3_rec | ECOD (1.6) |
G [auth I] | MIR | e5t9mI9 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: MIR | ECOD (1.6) |
G [auth I] | EF-hand_8 | e5t9mI12 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_8 | ECOD (1.6) |
G [auth I] | RyR | e5t9mI6 | A: alpha duplicates or obligate multimers | X: RyR motifs (From Topology) | H: RyR motifs (From Topology) | T: RyR motifs | F: RyR | ECOD (1.6) |
G [auth I] | RIH_assoc | e5t9mI2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RIH_assoc | ECOD (1.6) |
G [auth I] | KOG2243 | e5t9mI4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG2243 | ECOD (1.6) |
G [auth I] | RYDR_ITPR_1 | e5t9mI5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR_1 | ECOD (1.6) |
G [auth I] | RYDR_ITPR | e5t9mI3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR | ECOD (1.6) |
G [auth I] | RR_TM4-6 | e5t9mI1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: RR_TM4-6 | ECOD (1.6) |
H [auth G] | SPRY | e5t9mG8 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: SPRY | ECOD (1.6) |
H [auth G] | Ins145_P3_rec | e5t9mG10 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: Ins145_P3_rec | ECOD (1.6) |
H [auth G] | MIR | e5t9mG9 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: MIR | ECOD (1.6) |
H [auth G] | EF-hand_8 | e5t9mG12 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_8 | ECOD (1.6) |
H [auth G] | RyR | e5t9mG6 | A: alpha duplicates or obligate multimers | X: RyR motifs (From Topology) | H: RyR motifs (From Topology) | T: RyR motifs | F: RyR | ECOD (1.6) |
H [auth G] | RIH_assoc | e5t9mG2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RIH_assoc | ECOD (1.6) |
H [auth G] | KOG2243 | e5t9mG4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG2243 | ECOD (1.6) |
H [auth G] | RYDR_ITPR_1 | e5t9mG5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR_1 | ECOD (1.6) |
H [auth G] | RYDR_ITPR | e5t9mG3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR | ECOD (1.6) |
H [auth G] | RR_TM4-6 | e5t9mG1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: RR_TM4-6 | ECOD (1.6) |
E [auth B] | SPRY | e5t9mB8 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: SPRY | ECOD (1.6) |
E [auth B] | Ins145_P3_rec | e5t9mB10 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: Ins145_P3_rec | ECOD (1.6) |
E [auth B] | MIR | e5t9mB9 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: MIR | ECOD (1.6) |
E [auth B] | EF-hand_8 | e5t9mB12 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_8 | ECOD (1.6) |
E [auth B] | RyR | e5t9mB6 | A: alpha duplicates or obligate multimers | X: RyR motifs (From Topology) | H: RyR motifs (From Topology) | T: RyR motifs | F: RyR | ECOD (1.6) |
E [auth B] | RIH_assoc | e5t9mB2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RIH_assoc | ECOD (1.6) |
E [auth B] | KOG2243 | e5t9mB4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG2243 | ECOD (1.6) |
E [auth B] | RYDR_ITPR_1 | e5t9mB5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR_1 | ECOD (1.6) |
E [auth B] | RYDR_ITPR | e5t9mB3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR | ECOD (1.6) |
E [auth B] | RR_TM4-6 | e5t9mB1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: RR_TM4-6 | ECOD (1.6) |
F [auth E] | SPRY | e5t9mE8 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: SPRY | ECOD (1.6) |
F [auth E] | Ins145_P3_rec | e5t9mE10 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: Ins145_P3_rec | ECOD (1.6) |
F [auth E] | MIR | e5t9mE9 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: MIR | ECOD (1.6) |
F [auth E] | EF-hand_8 | e5t9mE12 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_8 | ECOD (1.6) |
F [auth E] | RyR | e5t9mE6 | A: alpha duplicates or obligate multimers | X: RyR motifs (From Topology) | H: RyR motifs (From Topology) | T: RyR motifs | F: RyR | ECOD (1.6) |
F [auth E] | RIH_assoc | e5t9mE2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RIH_assoc | ECOD (1.6) |
F [auth E] | KOG2243 | e5t9mE4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG2243 | ECOD (1.6) |
F [auth E] | RYDR_ITPR_1 | e5t9mE5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR_1 | ECOD (1.6) |
F [auth E] | RYDR_ITPR | e5t9mE3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR | ECOD (1.6) |
F [auth E] | RR_TM4-6 | e5t9mE1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: RR_TM4-6 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth F], B [auth A], C [auth H], D [auth J] | PF00254 | FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP_C) | FKBP-type peptidyl-prolyl cis-trans isomerase | - | Domain |
E [auth B], F [auth E], G [auth I], H [auth G] | PF00622 | SPRY domain (SPRY) | SPRY domain | - | Family |
E [auth B], F [auth E], G [auth I], H [auth G] | PF08454 | RyR and IP3R Homology associated (RIH_assoc) | RyR and IP3R Homology associated | - | Repeat |
E [auth B], F [auth E], G [auth I], H [auth G] | PF02815 | MIR domain (MIR) | MIR domain | The MIR (protein mannosyltransferase, IP3R and RyR) domain is a domain that may have a ligand transferase function [1]. | Domain |
E [auth B], F [auth E], G [auth I], H [auth G] | PF08709 | Inositol 1,4,5-trisphosphate/ryanodine receptor (Ins145_P3_rec) | Inositol 1,4,5-trisphosphate/ryanodine receptor | This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N terminal region of the ryanodine receptor. Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-ga ... | Domain |
E [auth B], F [auth E], G [auth I], H [auth G] | PF21119 | Ryanodine receptor junctional solenoid repeat (RYDR_Jsol) | Ryanodine receptor junctional solenoid repeat | This entry represents a region of the Ryanodine receptor composed of alpha helical ARM repeats [1]. This region has been termed the Junctional solenoid region (Jsol) [1]. | Domain |
E [auth B], F [auth E], G [auth I], H [auth G] | PF01365 | RIH domain (RYDR_ITPR) | RIH domain | - | Repeat |
E [auth B], F [auth E], G [auth I], H [auth G] | PF00520 | Ion transport protein (Ion_trans) | Ion transport protein | - | Family |
E [auth B], F [auth E], G [auth I], H [auth G] | PF02026 | RyR domain (RyR) | RyR domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
A [auth F], B [auth A], C [auth H], D [auth J] | P68106 | :