8B7Y

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth U]SCOP2B SuperfamilyRibosomal protein L16p/L10e8096366 3000884 SCOP2B (2022-06-29)
K [auth V]SCOP2B SuperfamilyProkaryotic ribosomal protein L178035409 3000995 SCOP2B (2022-06-29)
L [auth W]SCOP2B SuperfamilyTranslational machinery components8032969 3000571 SCOP2B (2022-06-29)
M [auth X]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8096364 3000334 SCOP2B (2022-06-29)
N [auth Y]SCOP2B SuperfamilyRibosomal protein L208096382 3000563 SCOP2B (2022-06-29)
O [auth Z]SCOP2B Superfamilyl21p-like8096354 3002005 SCOP2B (2022-06-29)
P [auth a]SCOP2B SuperfamilyRibosomal protein L228096336 3001078 SCOP2B (2022-06-29)
Q [auth b]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8035415 3000210 SCOP2B (2022-06-29)
R [auth c]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8096358 3000334 SCOP2B (2022-06-29)
S [auth d]SCOP2B SuperfamilyRibosomal protein L25-like8042538 3001161 SCOP2B (2022-06-29)
T [auth e]SCOP2B SuperfamilyRibosomal L27 protein-like8096338 3000539 SCOP2B (2022-06-29)
U [auth f]SCOP2B SuperfamilyL28p-like8035424 3001966 SCOP2B (2022-06-29)
V [auth g]SCOP2B SuperfamilyRibosomal protein L29 (L29p)8096370 3000713 SCOP2B (2022-06-29)
W [auth h]SCOP2B SuperfamilyRibosomal protein L30p/L7e8096372 3001378 SCOP2B (2022-06-29)
X [auth i]SCOP2B SuperfamilyZn-binding ribosomal proteins8096380 3001320 SCOP2B (2022-06-29)
Y [auth j]SCOP2B SuperfamilyZn-binding ribosomal proteins8096362 3001320 SCOP2B (2022-06-29)
AA [auth l]SCOP2B SuperfamilyL35p-like8035388 3000790 SCOP2B (2022-06-29)
BA [auth m]SCOP2B SuperfamilyRibosomal protein L368035391 3001346 SCOP2B (2022-06-29)
C [auth K]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8035393 3000334 SCOP2B (2022-06-29)
C [auth K]SCOP2B SuperfamilyNucleic acid-binding proteins8035394 3000135 SCOP2B (2022-06-29)
EA [auth D]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8063838 3001397 SCOP2B (2022-06-29)
GA [auth F]SCOP2B SuperfamilyAlpha-L RNA-binding motif8083400 3001473 SCOP2B (2022-06-29)
IA [auth H]SCOP2B SuperfamilyRibosomal protein S68066495 3001323 SCOP2B (2022-06-29)
JA [auth N]SCOP2B SuperfamilyRibosomal protein S78077979 3000799 SCOP2B (2022-06-29)
KA [auth P]SCOP2B SuperfamilyRibosomal protein S88079059 3000709 SCOP2B (2022-06-29)
LA [auth Q]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082661 3000100 SCOP2B (2022-06-29)
MA [auth o]SCOP2B SuperfamilyRibosomal protein S108102681 3001336 SCOP2B (2022-06-29)
D [auth L]SCOP2B SuperfamilyTranslational proteins8032955 3000811 SCOP2B (2022-06-29)
NA [auth p]SCOP2B SuperfamilyTranslational machinery components8035368 3000571 SCOP2B (2022-06-29)
OA [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins8106545 3000135 SCOP2B (2022-06-29)
PA [auth r]SCOP2B SuperfamilyS13-like H2TH domain8098358 3000053 SCOP2B (2022-06-29)
QA [auth s]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052568 3000068 SCOP2B (2022-06-29)
RA [auth t]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8032375 3001284 SCOP2B (2022-06-29)
SA [auth u]SCOP2B SuperfamilyRibosomal protein S168106547 3000680 SCOP2B (2022-06-29)
TA [auth v]SCOP2B SuperfamilyNucleic acid-binding proteins8059276 3000135 SCOP2B (2022-06-29)
VA [auth x]SCOP2B SuperfamilyRibosomal protein S198103915 3000686 SCOP2B (2022-06-29)
E [auth M]SCOP2B SuperfamilyRibosomal protein L48096356 3001146 SCOP2B (2022-06-29)
XA [auth 5]SCOP2B SuperfamilyRibosomal protein S218053090 3002159 SCOP2B (2022-06-29)
F [auth O]SCOP2B SuperfamilyRibosomal protein L68035398 3000724 SCOP2B (2022-06-29)
F [auth O]SCOP2B SuperfamilyRibosomal protein L68035397 3000724 SCOP2B (2022-06-29)
G [auth R]SCOP2B SuperfamilyRibosomal protein L138096350 3001134 SCOP2B (2022-06-29)
H [auth S]SCOP2B Superfamily50S Ribosomal protein L14-like8103358 3000433 SCOP2B (2022-06-29)
I [auth T]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8070553 3001045 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Z [auth k]F_UNCLASSIFIEDe8b7yk1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: F_UNCLASSIFIEDECOD (1.6)
J [auth U]F_UNCLASSIFIEDe8b7yU1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: F_UNCLASSIFIEDECOD (1.6)
K [auth V]F_UNCLASSIFIEDe8b7yV1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: F_UNCLASSIFIEDECOD (1.6)
L [auth W]F_UNCLASSIFIEDe8b7yW1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: F_UNCLASSIFIEDECOD (1.6)
M [auth X]F_UNCLASSIFIEDe8b7yX1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
N [auth Y]F_UNCLASSIFIEDe8b7yY1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: F_UNCLASSIFIEDECOD (1.6)
O [auth Z]F_UNCLASSIFIEDe8b7yZ1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: F_UNCLASSIFIEDECOD (1.6)
P [auth a]F_UNCLASSIFIEDe8b7ya1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: F_UNCLASSIFIEDECOD (1.6)
Q [auth b]F_UNCLASSIFIEDe8b7yb1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: F_UNCLASSIFIEDECOD (1.6)
R [auth c]F_UNCLASSIFIEDe8b7yc1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
S [auth d]F_UNCLASSIFIEDe8b7yd1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: F_UNCLASSIFIEDECOD (1.6)
T [auth e]F_UNCLASSIFIEDe8b7ye1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: F_UNCLASSIFIEDECOD (1.6)
U [auth f]F_UNCLASSIFIEDe8b7yf1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: F_UNCLASSIFIEDECOD (1.6)
V [auth g]F_UNCLASSIFIEDe8b7yg1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: F_UNCLASSIFIEDECOD (1.6)
W [auth h]F_UNCLASSIFIEDe8b7yh1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: F_UNCLASSIFIEDECOD (1.6)
X [auth i]F_UNCLASSIFIEDe8b7yi1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
Y [auth j]F_UNCLASSIFIEDe8b7yj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
AA [auth l]F_UNCLASSIFIEDe8b7yl1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: F_UNCLASSIFIEDECOD (1.6)
BA [auth m]F_UNCLASSIFIEDe8b7ym1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: F_UNCLASSIFIEDECOD (1.6)
C [auth K]F_UNCLASSIFIEDe8b7yK2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: F_UNCLASSIFIEDECOD (1.6)
C [auth K]F_UNCLASSIFIEDe8b7yK1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
EA [auth D]F_UNCLASSIFIEDe8b7yD1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: F_UNCLASSIFIEDECOD (1.6)
FA [auth E]F_UNCLASSIFIEDe8b7yE2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: F_UNCLASSIFIEDECOD (1.6)
FA [auth E]F_UNCLASSIFIEDe8b7yE1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: F_UNCLASSIFIEDECOD (1.6)
GA [auth F]F_UNCLASSIFIEDe8b7yF1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: F_UNCLASSIFIEDECOD (1.6)
HA [auth G]F_UNCLASSIFIEDe8b7yG2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: F_UNCLASSIFIEDECOD (1.6)
HA [auth G]F_UNCLASSIFIEDe8b7yG1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: F_UNCLASSIFIEDECOD (1.6)
IA [auth H]F_UNCLASSIFIEDe8b7yH1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: F_UNCLASSIFIEDECOD (1.6)
JA [auth N]F_UNCLASSIFIEDe8b7yN1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: F_UNCLASSIFIEDECOD (1.6)
KA [auth P]F_UNCLASSIFIEDe8b7yP2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
KA [auth P]F_UNCLASSIFIEDe8b7yP1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
LA [auth Q]F_UNCLASSIFIEDe8b7yQ1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: F_UNCLASSIFIEDECOD (1.6)
MA [auth o]F_UNCLASSIFIEDe8b7yo1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: F_UNCLASSIFIEDECOD (1.6)
D [auth L]F_UNCLASSIFIEDe8b7yL1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
NA [auth p]F_UNCLASSIFIEDe8b7yp1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: F_UNCLASSIFIEDECOD (1.6)
OA [auth q]F_UNCLASSIFIEDe8b7yq1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: F_UNCLASSIFIEDECOD (1.6)
PA [auth r]F_UNCLASSIFIEDe8b7yr1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: F_UNCLASSIFIEDECOD (1.6)
QA [auth s]F_UNCLASSIFIEDe8b7ys1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: F_UNCLASSIFIEDECOD (1.6)
RA [auth t]F_UNCLASSIFIEDe8b7yt1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: F_UNCLASSIFIEDECOD (1.6)
SA [auth u]F_UNCLASSIFIEDe8b7yu1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: F_UNCLASSIFIEDECOD (1.6)
TA [auth v]F_UNCLASSIFIEDe8b7yv1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: F_UNCLASSIFIEDECOD (1.6)
UA [auth w]F_UNCLASSIFIEDe8b7yw1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: F_UNCLASSIFIEDECOD (1.6)
VA [auth x]F_UNCLASSIFIEDe8b7yx1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: F_UNCLASSIFIEDECOD (1.6)
WA [auth y]F_UNCLASSIFIEDe8b7yy1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: F_UNCLASSIFIEDECOD (1.6)
E [auth M]F_UNCLASSIFIEDe8b7yM1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: F_UNCLASSIFIEDECOD (1.6)
XA [auth 5]F_UNCLASSIFIEDe8b7y51 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: F_UNCLASSIFIEDECOD (1.6)
F [auth O]F_UNCLASSIFIEDe8b7yO2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: F_UNCLASSIFIEDECOD (1.6)
G [auth R]F_UNCLASSIFIEDe8b7yR1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: F_UNCLASSIFIEDECOD (1.6)
H [auth S]F_UNCLASSIFIEDe8b7yS1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: F_UNCLASSIFIEDECOD (1.6)
I [auth T]F_UNCLASSIFIEDe8b7yT1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: F_UNCLASSIFIEDECOD (1.6)

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Z [auth k]50S ribosomal protein L34
A [auth I]23S ribosomal RNAnonenonenone
J [auth U]50S ribosomal protein L16
K [auth V]50S ribosomal protein L17
L [auth W]50S ribosomal protein L18
M [auth X]50S ribosomal protein L19
N [auth Y]50S ribosomal protein L20
O [auth Z]50S ribosomal protein L21
P [auth a]50S ribosomal protein L22
Q [auth b]50S ribosomal protein L23
R [auth c]50S ribosomal protein L24
S [auth d]50S ribosomal protein L25
B [auth J]5S ribosomal RNAnonenonenone
T [auth e]50S ribosomal protein L27
U [auth f]50S ribosomal protein L28
V [auth g]50S ribosomal protein L29
W [auth h]50S ribosomal protein L30
X [auth i]50S ribosomal protein L32
Y [auth j]50S ribosomal protein L33
AA [auth l]50S ribosomal protein L35
BA [auth m]50S ribosomal protein L36
CA [auth n]P-tRNA fMetnonenonenone
C [auth K]50S ribosomal protein L2
DA [auth C]16S ribosomal RNAnonenonenone
EA [auth D]30S ribosomal protein S2
FA [auth E]30S ribosomal protein S3
GA [auth F]30S ribosomal protein S4
HA [auth G]30S ribosomal protein S5
IA [auth H]30S ribosomal protein S6
JA [auth N]30S ribosomal protein S7
KA [auth P]30S ribosomal protein S8
LA [auth Q]30S ribosomal protein S9
MA [auth o]30S ribosomal protein S10
D [auth L]50S ribosomal protein L3
NA [auth p]30S ribosomal protein S11
OA [auth q]30S ribosomal protein S12
PA [auth r]30S ribosomal protein S13
QA [auth s]30S ribosomal protein S14
RA [auth t]30S ribosomal protein S15
SA [auth u]30S ribosomal protein S16
TA [auth v]30S ribosomal protein S17
UA [auth w]30S ribosomal protein S18
VA [auth x]30S ribosomal protein S19
WA [auth y]30S ribosomal protein S20
E [auth M]50S ribosomal protein L4
XA [auth 5]30S ribosomal protein S21
YA [auth 6]messenger RNAnonenonenone
ZA [auth z]Myxovalargin Bnonenonenone
F [auth O]50S ribosomal protein L6