A [auth 0] PF00468 Ribosomal protein L34 (Ribosomal_L34) Ribosomal protein L34 - Family J [auth A] PF03947 Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) Ribosomal Proteins L2, C-terminal domain Domain J [auth A] PF00181 Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) Ribosomal Proteins L2, RNA binding domain Domain J [auth A] PF00318 Ribosomal protein S2 (Ribosomal_S2) Ribosomal protein S2 - Family K [auth B] PF07650 KH domain (KH_2) KH domain Domain K [auth B] PF00297 Ribosomal protein L3 (Ribosomal_L3) Ribosomal protein L3 - Family K [auth B] PF00189 Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) Ribosomal protein S3, C-terminal domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain DA [auth U] ,L [auth C] PF00163 Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) Ribosomal protein S4/S9 N-terminal domain - Family DA [auth U] ,L [auth C] PF00573 Ribosomal protein L4/L1 family (Ribosomal_L4) Ribosomal protein L4/L1 family - Family DA [auth U] ,L [auth C] PF01479 S4 domain (S4) S4 domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. Less Domain M [auth D] PF03719 Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) Ribosomal protein S5, C-terminal domain Domain M [auth D] PF00281 Ribosomal protein L5 (Ribosomal_L5) Ribosomal protein L5 Domain M [auth D] PF00673 ribosomal L5P family C-terminus (Ribosomal_L5_C) ribosomal L5P family C-terminus This region is found associated with Pfam:PF00281. Domain M [auth D] PF00333 Ribosomal protein S5, N-terminal domain (Ribosomal_S5) Ribosomal protein S5, N-terminal domain Domain N [auth E] PF00347 Ribosomal protein L6 (Ribosomal_L6) Ribosomal protein L6 Domain N [auth E] PF01250 Ribosomal protein S6 (Ribosomal_S6) Ribosomal protein S6 Domain O [auth F] PF01281 Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) Ribosomal protein L9, N-terminal domain Domain O [auth F] PF03948 Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C) Ribosomal protein L9, C-terminal domain Domain O [auth F] PF00177 Ribosomal protein S7p/S5e (Ribosomal_S7) Ribosomal protein S7p/S5e This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain P [auth G] PF00410 Ribosomal protein S8 (Ribosomal_S8) Ribosomal protein S8 Domain Q [auth H] PF03946 Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) Ribosomal protein L11, N-terminal domain The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain Q [auth H] PF00380 Ribosomal protein S9/S16 (Ribosomal_S9) Ribosomal protein S9/S16 - Family Q [auth H] PF00298 Ribosomal protein L11, RNA binding domain (Ribosomal_L11) Ribosomal protein L11, RNA binding domain Domain R [auth I] PF00338 Ribosomal protein S10p/S20e (Ribosomal_S10) Ribosomal protein S10p/S20e This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain R [auth I] PF00572 Ribosomal protein L13 (Ribosomal_L13) Ribosomal protein L13 - Family S [auth J] PF00238 Ribosomal protein L14p/L23e (Ribosomal_L14) Ribosomal protein L14p/L23e Domain S [auth J] PF00411 Ribosomal protein S11 (Ribosomal_S11) Ribosomal protein S11 - Family B [auth 1] PF01632 Ribosomal protein L35 (Ribosomal_L35p) Ribosomal protein L35 - Family T [auth K] PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain T [auth K] PF00164 Ribosomal protein S12/S23 (Ribosom_S12_S23) Ribosomal protein S12/S23 This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain U [auth L] PF00416 Ribosomal protein S13/S18 (Ribosomal_S13) Ribosomal protein S13/S18 - Family U [auth L] PF00252 Ribosomal protein L16p/L10e (Ribosomal_L16) Ribosomal protein L16p/L10e Domain V [auth M] PF01196 Ribosomal protein L17 (Ribosomal_L17) Ribosomal protein L17 - Family V [auth M] PF00253 Ribosomal protein S14p/S29e (Ribosomal_S14) Ribosomal protein S14p/S29e - Family W [auth N] PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast - Family W [auth N] PF00312 Ribosomal protein S15 (Ribosomal_S15) Ribosomal protein S15 Domain X [auth O] PF00886 Ribosomal protein S16 (Ribosomal_S16) Ribosomal protein S16 - Family X [auth O] PF01245 Ribosomal protein L19 (Ribosomal_L19) Ribosomal protein L19 - Family Y [auth P] PF00453 Ribosomal protein L20 (Ribosomal_L20) Ribosomal protein L20 - Family Y [auth P] PF00366 Ribosomal protein S17 (Ribosomal_S17) Ribosomal protein S17 Domain Z [auth Q] PF01084 Ribosomal protein S18 (Ribosomal_S18) Ribosomal protein S18 - Family Z [auth Q] PF00829 Ribosomal prokaryotic L21 protein (Ribosomal_L21p) Ribosomal prokaryotic L21 protein - Family AA [auth R] PF00237 Ribosomal protein L22p/L17e (Ribosomal_L22) Ribosomal protein L22p/L17e This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain AA [auth R] PF00203 Ribosomal protein S19 (Ribosomal_S19) Ribosomal protein S19 Domain BA [auth S] PF01649 Ribosomal protein S20 (Ribosomal_S20p) Ribosomal protein S20 - Family BA [auth S] PF00276 Ribosomal protein L23 (Ribosomal_L23) Ribosomal protein L23 - Family CA [auth T] PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24) Ribosomal proteins 50S L24/mitochondrial 39S L24 - Family CA [auth T] PF00467 KOW motif (KOW) KOW motif - Family C [auth 2] PF00444 Ribosomal protein L36 (Ribosomal_L36) Ribosomal protein L36 Domain GA [auth Z] PF00471 Ribosomal protein L33 (Ribosomal_L33) Ribosomal protein L33 - Family