8P7Y

Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunit

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

Starting Models: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Structural insights into context-dependent inhibitory mechanisms of chloramphenicol in cells

Xue, L., Spahn, C.M.T., Schacherl, M., Mahamid, J.

(2024) Nat Struct Mol Biol 


Macromolecules

Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L34A [auth 0]48Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P78006 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P78006 
Go to UniProtKB:  P78006
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP78006
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L35B [auth 1]59Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75447 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75447 
Go to UniProtKB:  P75447
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75447
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L36C [auth 2]37Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P52864 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P52864 
Go to UniProtKB:  P52864
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP52864
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S2J [auth A]294Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75560 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75560 
Go to UniProtKB:  P75560
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75560
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S3K [auth B]273Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P41205 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P41205 
Go to UniProtKB:  P41205
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP41205
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S4DA [auth U],
L [auth C]		205Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P46775 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P46775 
Go to UniProtKB:  P46775
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP46775
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S5M [auth D]219Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50301 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore Q50301 
Go to UniProtKB:  Q50301
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ50301
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S6N [auth E]215Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75543 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75543 
Go to UniProtKB:  P75543
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75543
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S7O [auth F]155Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75545 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75545 
Go to UniProtKB:  P75545
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75545
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S8P [auth G]142Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50304 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore Q50304 
Go to UniProtKB:  Q50304
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ50304
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S9Q [auth H]132Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75179 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75179 
Go to UniProtKB:  P75179
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75179
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S10R [auth I]108Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75581 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75581 
Go to UniProtKB:  P75581
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75581
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S11S [auth J]121Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50296 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore Q50296 
Go to UniProtKB:  Q50296
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ50296
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S12T [auth K]139Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75546 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75546 
Go to UniProtKB:  P75546
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75546
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S13U [auth L]124Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50297 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore Q50297 
Go to UniProtKB:  Q50297
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ50297
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S14 type ZV [auth M]61Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50305 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore Q50305 
Go to UniProtKB:  Q50305
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ50305
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S15W [auth N]86Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75173 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75173 
Go to UniProtKB:  P75173
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75173
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S16X [auth O]94Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for A0A0H3DLS7 (Mycoplasmoides pneumoniae (strain ATCC 15531 / DSM 23978 / CIP 103766 / NBRC 14401 / NCTC 10119 / FH))
Explore A0A0H3DLS7 
Go to UniProtKB:  A0A0H3DLS7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0H3DLS7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S17Y [auth P]85Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50309 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore Q50309 
Go to UniProtKB:  Q50309
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ50309
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S18Z [auth Q]104Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75541 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75541 
Go to UniProtKB:  P75541
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75541
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S19AA [auth R]87Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75576 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75576 
Go to UniProtKB:  P75576
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75576
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S20BA [auth S]87Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75237 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75237 
Go to UniProtKB:  P75237
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75237
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S21CA [auth T]60Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P57079 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P57079 
Go to UniProtKB:  P57079
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP57079
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
Trigger factorEA [auth X]444Mycoplasmoides pneumoniae M129Mutation(s): 0 
EC: 5.2.1.8
UniProt
Find proteins for P75454 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75454 
Go to UniProtKB:  P75454
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75454
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
Nascent chainGA [auth Z]36Mycoplasmoides pneumoniae M129Mutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L2HA [auth a]287Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75577 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75577 
Go to UniProtKB:  P75577
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75577
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L3IA [auth b]287Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75580 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75580 
Go to UniProtKB:  P75580
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75580
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L4JA [auth c]212Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75579 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75579 
Go to UniProtKB:  P75579
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75579
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L5KA [auth d]180Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50306 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore Q50306 
Go to UniProtKB:  Q50306
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ50306
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L6LA [auth e]184Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50303 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore Q50303 
Go to UniProtKB:  Q50303
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ50303
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L9MA [auth f]149Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75540 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75540 
Go to UniProtKB:  P75540
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75540
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L10NA [auth g]161Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75240 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75240 
Go to UniProtKB:  P75240
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75240
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L11OA [auth h]137Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75550 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75550 
Go to UniProtKB:  P75550
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75550
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L13PA [auth i]146Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75178 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75178 
Go to UniProtKB:  P75178
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75178
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L14QA [auth j]122Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50308 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore Q50308 
Go to UniProtKB:  Q50308
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ50308
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L15RA [auth k]151Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50300 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore Q50300 
Go to UniProtKB:  Q50300
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ50300
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L16SA [auth l]139Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P41204 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P41204 
Go to UniProtKB:  P41204
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP41204
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L17TA [auth m]124Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q59547 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore Q59547 
Go to UniProtKB:  Q59547
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ59547
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L18UA [auth n]116Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50302 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore Q50302 
Go to UniProtKB:  Q50302
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ50302
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L19VA [auth o]119Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75133 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75133 
Go to UniProtKB:  P75133
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75133
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L20WA [auth p]127Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P78023 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P78023 
Go to UniProtKB:  P78023
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP78023
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L21XA [auth q]100Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P78026 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P78026 
Go to UniProtKB:  P78026
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP78026
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L22YA [auth r]159Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75575 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75575 
Go to UniProtKB:  P75575
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75575
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L23ZA [auth s]237Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75578 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75578 
Go to UniProtKB:  P75578
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75578
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L24AB [auth t]111Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50307 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore Q50307 
Go to UniProtKB:  Q50307
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ50307
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L27BB [auth u]104Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75458 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75458 
Go to UniProtKB:  P75458
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75458
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L28CB [auth v]65Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75171 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75171 
Go to UniProtKB:  P75171
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75171
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L29DB [auth w]111Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for Q50310 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore Q50310 
Go to UniProtKB:  Q50310
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ50310
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L31EB [auth x]97Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P78020 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P78020 
Go to UniProtKB:  P78020
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP78020
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L32FB [auth y]57Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P75238 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75238 
Go to UniProtKB:  P75238
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75238
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L33 1GB [auth z]53Mycoplasmoides pneumoniae M129Mutation(s): 0 
UniProt
Find proteins for P78015 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P78015 
Go to UniProtKB:  P78015
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP78015
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains LengthOrganismImage
23S ribosomal RNAD [auth 3]2,907Mycoplasmoides pneumoniae M129
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains LengthOrganismImage
5S ribosomal RNAE [auth 4]108Mycoplasmoides pneumoniae M129
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains LengthOrganismImage
16S ribosomal RNAF [auth 5]1,520Mycoplasmoides pneumoniae M129
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains LengthOrganismImage
tRNA-Ala (E-site)G [auth 6]76Mycoplasmoides pneumoniae M129
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains LengthOrganismImage
tRNA-Asp (P-site)H [auth 7]75Mycoplasmoides pneumoniae M129
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains LengthOrganismImage
tRNA-Lys (A-site)I [auth 8]76Mycoplasmoides pneumoniae M129
Sequence Annotations
Expand
  • Reference Sequence

Find similar nucleic acids by:  Sequence   |   3D Structure  

Entity ID: 31
MoleculeChains LengthOrganismImage
mRNAFA [auth Y]21Mycoplasmoides pneumoniae M129
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 9 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CLM (Subject of Investigation/LOI)
Query on CLM
Download Ideal Coordinates CCD File 
IB [auth 3]CHLORAMPHENICOL
C11 H12 Cl2 N2 O5
WIIZWVCIJKGZOK-RKDXNWHRSA-N
SPM
Query on SPM
Download Ideal Coordinates CCD File 
CK [auth 3],
FP [auth b],
QK [auth 3],
YK [auth 3]		SPERMINE
C10 H26 N4
PFNFFQXMRSDOHW-UHFFFAOYSA-N
LYS
Query on LYS
Download Ideal Coordinates CCD File 
WO [auth 8]LYSINE
C6 H15 N2 O2
KDXKERNSBIXSRK-YFKPBYRVSA-O
SPD
Query on SPD
Download Ideal Coordinates CCD File 
BL [auth 5]
DK [auth 3]
DL [auth 5]
EK [auth 3]
FK [auth 3]
BL [auth 5],
DK [auth 3],
DL [auth 5],
EK [auth 3],
FK [auth 3],
HK [auth 3],
IK [auth 3],
JK [auth 3],
KK [auth 3],
LK [auth 3],
MK [auth 3],
NK [auth 3],
OK [auth 3],
PK [auth 3],
UK [auth 3],
VK [auth 3],
XK [auth 3],
ZK [auth 3]
SPERMIDINE
C7 H19 N3
ATHGHQPFGPMSJY-UHFFFAOYSA-N
N2P
Query on N2P
Download Ideal Coordinates CCD File 
CL [auth 5],
SK [auth 3],
TK [auth 3],
WK [auth 3]		PENTANE-1,5-DIAMINE
C5 H14 N2
VHRGRCVQAFMJIZ-UHFFFAOYSA-N
PUT
Query on PUT
Download Ideal Coordinates CCD File 
AK [auth 3]
BK [auth 3]
EL [auth 5]
GK [auth 3]
RK [auth 3]
AK [auth 3],
BK [auth 3],
EL [auth 5],
GK [auth 3],
RK [auth 3],
XJ [auth 3],
YJ [auth 3],
ZJ [auth 3]
1,4-DIAMINOBUTANE
C4 H12 N2
KIDHWZJUCRJVML-UHFFFAOYSA-N
ZN
Query on ZN
Download Ideal Coordinates CCD File 
AP [auth Q]
HB [auth 2]
HP [auth x]
KP [auth y]
LP [auth z]
AP [auth Q],
HB [auth 2],
HP [auth x],
KP [auth y],
LP [auth z],
YO [auth M]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
K
Query on K
Download Ideal Coordinates CCD File 
JB [auth 3]POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
MG
Query on MG
Download Ideal Coordinates CCD File 
AC [auth 3]
AD [auth 3]
AE [auth 3]
AF [auth 3]
AG [auth 3]
AC [auth 3],
AD [auth 3],
AE [auth 3],
AF [auth 3],
AG [auth 3],
AH [auth 3],
AI [auth 3],
AJ [auth 3],
AL [auth 4],
AM [auth 5],
AN [auth 5],
AO [auth 5],
BC [auth 3],
BD [auth 3],
BE [auth 3],
BF [auth 3],
BG [auth 3],
BH [auth 3],
BI [auth 3],
BJ [auth 3],
BM [auth 5],
BN [auth 5],
BO [auth 5],
BP [auth Y],
CC [auth 3],
CD [auth 3],
CE [auth 3],
CF [auth 3],
CG [auth 3],
CH [auth 3],
CI [auth 3],
CJ [auth 3],
CM [auth 5],
CN [auth 5],
CO [auth 5],
CP [auth Y],
DC [auth 3],
DD [auth 3],
DE [auth 3],
DF [auth 3],
DG [auth 3],
DH [auth 3],
DI [auth 3],
DJ [auth 3],
DM [auth 5],
DN [auth 5],
DO [auth 5],
DP [auth b],
EC [auth 3],
ED [auth 3],
EE [auth 3],
EF [auth 3],
EG [auth 3],
EH [auth 3],
EI [auth 3],
EJ [auth 3],
EM [auth 5],
EN [auth 5],
EO [auth 5],
EP [auth b],
FC [auth 3],
FD [auth 3],
FE [auth 3],
FF [auth 3],
FG [auth 3],
FH [auth 3],
FI [auth 3],
FJ [auth 3],
FL [auth 5],
FM [auth 5],
FN [auth 5],
FO [auth 5],
GC [auth 3],
GD [auth 3],
GE [auth 3],
GF [auth 3],
GG [auth 3],
GH [auth 3],
GI [auth 3],
GJ [auth 3],
GL [auth 5],
GM [auth 5],
GN [auth 5],
GO [auth 5],
GP [auth i],
HC [auth 3],
HD [auth 3],
HE [auth 3],
HF [auth 3],
HG [auth 3],
HH [auth 3],
HI [auth 3],
HJ [auth 3],
HL [auth 5],
HM [auth 5],
HN [auth 5],
HO [auth 5],
IC [auth 3],
ID [auth 3],
IE [auth 3],
IF [auth 3],
IG [auth 3],
IH [auth 3],
II [auth 3],
IJ [auth 3],
IL [auth 5],
IM [auth 5],
IN [auth 5],
IO [auth 5],
IP [auth y],
JC [auth 3],
JD [auth 3],
JE [auth 3],
JF [auth 3],
JG [auth 3],
JH [auth 3],
JI [auth 3],
JJ [auth 3],
JL [auth 5],
JM [auth 5],
JN [auth 5],
JO [auth 5],
JP [auth y],
KB [auth 3],
KC [auth 3],
KD [auth 3],
KE [auth 3],
KF [auth 3],
KG [auth 3],
KH [auth 3],
KI [auth 3],
KJ [auth 3],
KL [auth 5],
KM [auth 5],
KN [auth 5],
KO [auth 5],
LB [auth 3],
LC [auth 3],
LD [auth 3],
LE [auth 3],
LF [auth 3],
LG [auth 3],
LH [auth 3],
LI [auth 3],
LJ [auth 3],
LL [auth 5],
LM [auth 5],
LN [auth 5],
LO [auth 5],
MB [auth 3],
MC [auth 3],
MD [auth 3],
ME [auth 3],
MF [auth 3],
MG [auth 3],
MH [auth 3],
MI [auth 3],
MJ [auth 3],
ML [auth 5],
MM [auth 5],
MN [auth 5],
MO [auth 5],
NB [auth 3],
NC [auth 3],
ND [auth 3],
NE [auth 3],
NF [auth 3],
NG [auth 3],
NH [auth 3],
NI [auth 3],
NJ [auth 3],
NL [auth 5],
NM [auth 5],
NN [auth 5],
NO [auth 5],
OB [auth 3],
OC [auth 3],
OD [auth 3],
OE [auth 3],
OF [auth 3],
OG [auth 3],
OH [auth 3],
OI [auth 3],
OJ [auth 3],
OL [auth 5],
OM [auth 5],
ON [auth 5],
OO [auth 5],
PB [auth 3],
PC [auth 3],
PD [auth 3],
PE [auth 3],
PF [auth 3],
PG [auth 3],
PH [auth 3],
PI [auth 3],
PJ [auth 3],
PL [auth 5],
PM [auth 5],
PN [auth 5],
PO [auth 5],
QB [auth 3],
QC [auth 3],
QD [auth 3],
QE [auth 3],
QF [auth 3],
QG [auth 3],
QH [auth 3],
QI [auth 3],
QJ [auth 3],
QL [auth 5],
QM [auth 5],
QN [auth 5],
QO [auth 5],
RB [auth 3],
RC [auth 3],
RD [auth 3],
RE [auth 3],
RF [auth 3],
RG [auth 3],
RH [auth 3],
RI [auth 3],
RJ [auth 3],
RL [auth 5],
RM [auth 5],
RN [auth 5],
RO [auth 6],
SB [auth 3],
SC [auth 3],
SD [auth 3],
SE [auth 3],
SF [auth 3],
SG [auth 3],
SH [auth 3],
SI [auth 3],
SJ [auth 3],
SL [auth 5],
SM [auth 5],
SN [auth 5],
SO [auth 7],
TB [auth 3],
TC [auth 3],
TD [auth 3],
TE [auth 3],
TF [auth 3],
TG [auth 3],
TH [auth 3],
TI [auth 3],
TJ [auth 3],
TL [auth 5],
TM [auth 5],
TN [auth 5],
TO [auth 7],
UB [auth 3],
UC [auth 3],
UD [auth 3],
UE [auth 3],
UF [auth 3],
UG [auth 3],
UH [auth 3],
UI [auth 3],
UJ [auth 3],
UL [auth 5],
UM [auth 5],
UN [auth 5],
UO [auth 8],
VB [auth 3],
VC [auth 3],
VD [auth 3],
VE [auth 3],
VF [auth 3],
VG [auth 3],
VH [auth 3],
VI [auth 3],
VJ [auth 3],
VL [auth 5],
VM [auth 5],
VN [auth 5],
VO [auth 8],
WB [auth 3],
WC [auth 3],
WD [auth 3],
WE [auth 3],
WF [auth 3],
WG [auth 3],
WH [auth 3],
WI [auth 3],
WJ [auth 3],
WL [auth 5],
WM [auth 5],
WN [auth 5],
XB [auth 3],
XC [auth 3],
XD [auth 3],
XE [auth 3],
XF [auth 3],
XG [auth 3],
XH [auth 3],
XI [auth 3],
XL [auth 5],
XM [auth 5],
XN [auth 5],
XO [auth K],
YB [auth 3],
YC [auth 3],
YD [auth 3],
YE [auth 3],
YF [auth 3],
YG [auth 3],
YH [auth 3],
YI [auth 3],
YL [auth 5],
YM [auth 5],
YN [auth 5],
ZB [auth 3],
ZC [auth 3],
ZD [auth 3],
ZE [auth 3],
ZF [auth 3],
ZG [auth 3],
ZH [auth 3],
ZI [auth 3],
ZL [auth 5],
ZM [auth 5],
ZN [auth 5],
ZO [auth P]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Chan Zuckerberg InitiativeUnited StatesVisual Proteomics Imaging
German Research Foundation (DFG)Germany--

Revision History  (Full details and data files)

  • Version 1.0: 2024-11-20
    Type: Initial release