X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2BFXPDB ENTRY 2BFX

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.1542.29

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.736α = 90
b = 67.6β = 96.59
c = 116.631γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2007-03-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-1ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.711698.50.0620.23.8728843
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7495.50.2520.23.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2BFX1.7116.2572884386698.60.1990.1970.229RANDOM23.72
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.38-0.282.01-1.69
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.45
r_dihedral_angle_4_deg16.229
r_dihedral_angle_3_deg13.854
r_dihedral_angle_1_deg4.989
r_scangle_it2.517
r_scbond_it1.548
r_angle_refined_deg1.089
r_mcangle_it1.016
r_mcbond_it0.613
r_nbtor_refined0.305
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.45
r_dihedral_angle_4_deg16.229
r_dihedral_angle_3_deg13.854
r_dihedral_angle_1_deg4.989
r_scangle_it2.517
r_scbond_it1.548
r_angle_refined_deg1.089
r_mcangle_it1.016
r_mcbond_it0.613
r_nbtor_refined0.305
r_nbd_refined0.191
r_symmetry_vdw_refined0.167
r_symmetry_hbond_refined0.156
r_xyhbond_nbd_refined0.11
r_chiral_restr0.072
r_bond_refined_d0.007
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5237
Nucleic Acid Atoms
Solvent Atoms626
Heterogen Atoms58

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing