X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8293100 mM HEPES pH 7.0, 8% PEG 8000
Crystal Properties
Matthews coefficientSolvent content
2.4750.28

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 114.86α = 90
b = 114.86β = 90
c = 63.899γ = 90
Symmetry
Space GroupP 4

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2015-04-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.918409BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8442.7299.70.1380.9949.063.7471773
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.841.96990.7820.5751.743.55

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.8442.7170147179999.780.154450.153380.19671RANDOM20.033
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.07-0.070.14
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.428
r_dihedral_angle_4_deg13.804
r_dihedral_angle_3_deg13.068
r_dihedral_angle_1_deg7.304
r_long_range_B_refined4.528
r_long_range_B_other4.527
r_angle_other_deg3.771
r_scangle_other3.202
r_scbond_it2.061
r_scbond_other2.058
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.428
r_dihedral_angle_4_deg13.804
r_dihedral_angle_3_deg13.068
r_dihedral_angle_1_deg7.304
r_long_range_B_refined4.528
r_long_range_B_other4.527
r_angle_other_deg3.771
r_scangle_other3.202
r_scbond_it2.061
r_scbond_other2.058
r_mcangle_other1.98
r_mcangle_it1.978
r_angle_refined_deg1.66
r_mcbond_it1.359
r_mcbond_other1.355
r_chiral_restr0.106
r_bond_refined_d0.015
r_gen_planes_other0.013
r_gen_planes_refined0.009
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5984
Nucleic Acid Atoms
Solvent Atoms793
Heterogen Atoms191

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
MOLREPphasing
PDB_EXTRACTdata extraction
XDSdata scaling