X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION72891.8 M Ammonium citrate tribasic pH 7.0
Crystal Properties
Matthews coefficientSolvent content
3.463.78

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 94.957α = 90
b = 94.981β = 90
c = 145.503γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2018-12-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL18U10.97853SSRFBL18U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.75099.20.1811712.9143862
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7698.41.311.312.62512

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.739.79136108733198.920.167710.166560.18928RANDOM15.655
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.070.09-0.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.638
r_dihedral_angle_3_deg12.856
r_dihedral_angle_4_deg9.14
r_dihedral_angle_1_deg6.543
r_long_range_B_refined5.023
r_long_range_B_other4.966
r_scangle_other4.231
r_scbond_it2.798
r_scbond_other2.789
r_mcangle_it2.214
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.638
r_dihedral_angle_3_deg12.856
r_dihedral_angle_4_deg9.14
r_dihedral_angle_1_deg6.543
r_long_range_B_refined5.023
r_long_range_B_other4.966
r_scangle_other4.231
r_scbond_it2.798
r_scbond_other2.789
r_mcangle_it2.214
r_mcangle_other2.214
r_angle_refined_deg1.695
r_angle_other_deg1.505
r_mcbond_it1.491
r_mcbond_other1.478
r_chiral_restr0.085
r_bond_refined_d0.015
r_gen_planes_refined0.01
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6810
Nucleic Acid Atoms
Solvent Atoms498
Heterogen Atoms60

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
MOLREPphasing