6Q3O

PROTEIN-AROMATIC FOLDAMER COMPLEX CRYSTAL STRUCTURE


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2KS3 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5293Zn acetate 0.2 M, Na cacodylate 0.1 M, PEG 8000 18%, NaN3 3mM
Crystal Properties
Matthews coefficientSolvent content
2.7555.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.106α = 66.1
b = 76.478β = 86.83
c = 81.417γ = 73.6
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 200KMirrors Osmic Varimax2018-06-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-X1.54178

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2328.2999.20.0997.881.896058930.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.232.3399.20.3981.76

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2KS32.2328.2957539299499.530.213970.211960.25291RANDOM31.611
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.03-0.120.820.03-0.12-0.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.474
r_dihedral_angle_4_deg15.656
r_dihedral_angle_3_deg14.234
r_dihedral_angle_1_deg7.818
r_long_range_B_refined1.821
r_long_range_B_other1.82
r_angle_other_deg1.807
r_angle_refined_deg1.696
r_scangle_other1.368
r_mcangle_other1.329
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.474
r_dihedral_angle_4_deg15.656
r_dihedral_angle_3_deg14.234
r_dihedral_angle_1_deg7.818
r_long_range_B_refined1.821
r_long_range_B_other1.82
r_angle_other_deg1.807
r_angle_refined_deg1.696
r_scangle_other1.368
r_mcangle_other1.329
r_mcangle_it1.328
r_scbond_it1.019
r_scbond_other1.019
r_mcbond_it0.983
r_mcbond_other0.982
r_chiral_restr0.077
r_bond_other_d0.018
r_bond_refined_d0.014
r_gen_planes_refined0.014
r_gen_planes_other0.009
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8124
Nucleic Acid Atoms
Solvent Atoms694
Heterogen Atoms447

Software

Software
Software NamePurpose
REFMACrefinement
CrysalisProdata reduction
Aimlessdata scaling
MOLREPphasing