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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Barbera, A.J."

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Search Summary

This query matches 70 Structures.

Refinements

Structure Determination Methodology

experimental (70)

Scientific Name of Source Organism

	Streptomyces venezuelae (14)
	Micromonospora griseorubida (9)
	Penicillium fellutanum (8)
	Fischerella sp. ATCC 43239 (7)
	Streptomyces sp. 307-9 (6)
	Streptomyces sp. NRRL F-5053 (5)
	Penicillium oxalicum (4)
	Escherichia coli (2)
	Lyngbya majuscula (2)
	Streptomyces coelicolor A3(2) (2)

More...

Taxonomy

	Bacteria (53)
	Eukaryota (17)
	Duplodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (68)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (69)
	RNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (10)
	1.5 - 2.0 (31)
	2.0 - 2.5 (17)
	2.5 - 3.0 (8)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (15)
	2010 - 2014 (17)
	2015 - 2019 (20)
	2020 - 2024 (16)

Enzyme Classification Name

	Oxidoreductases (29)
	Transferases (5)
	Hydrolases (2)
	Ligases (1)
	Lyases (1)

Symmetry Type

	Asymmetric (43)
	Cyclic (23)
	Dihedral (4)

SCOP Classification

	All alpha proteins (26)
	Alpha and beta proteins (a/b) (7)
	Artifacts (2)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 70 Structures

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1GWI \| pdb_00001gwi	Download File View File

The 1.92 A structure of Streptomyces coelicolor A3(2) CYP154C1: A new monooxygenase that functionalizes macrolide ring systems

Podust, L.M., Kim, Y., Arase, M., Neely, B.A., Beck, B.J., Bach, H., Sherman, D.H., Lamb, D.C., Kelly, S.L., Waterman, M.R.

(2003) J Biological Chem 278: 12214

Released	2003-01-29
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	CYTOCHROME P450 154C1 (protein)
Unique Ligands	HEM, SO4

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1ODO \| pdb_00001odo	Download File View File

1.85 A structure of CYP154A1 from Streptomyces coelicolor A3(2)

Podust, L.M., Kim, Y., Arase, M., Bach, H., Sherman, D.H., Lamb, D.C., Kelly, S.L., Waterman, M.R.

(2004) Protein Sci 13: 255

Released	2004-01-02
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	PUTATIVE CYTOCHROME P450 154A1 (protein)
Unique Ligands	HEM, PIM

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2BVJ \| pdb_00002bvj	Download File View File

Ligand-free structure of cytochrome P450 PikC (CYP107L1)

Sherman, D.H., Li, S., Yermalitskaya, L.V., Kim, Y., Smith, J.A., Waterman, M.R., Podust, L.M.

(2006) J Biological Chem 281: 26289

Released	2006-07-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	BME, DTT, HEM

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2C6H \| pdb_00002c6h	Download File View File

Crystal structure of YC-17-bound cytochrome P450 PikC (CYP107L1)

Sherman, D.H., Li, S., Yermalitskaya, L.V., Kim, Y., Smith, J.A., Waterman, M.R., Podust, L.M.

(2006) J Biological Chem 281: 26289

Released	2006-07-03
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	HEM, PXI, SO4

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2C7X \| pdb_00002c7x	Download File View File

Crystal structure of narbomycin-bound cytochrome P450 PikC (CYP107L1)

Sherman, D.H., Li, S., Yermalitskaya, L.V., Kim, Y., Smith, J.A., Waterman, M.R., Podust, L.M.

(2006) J Biological Chem 281: 26289

Released	2006-07-03
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	HEM, NRB

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2CA0 \| pdb_00002ca0	Download File View File

Crystal structure of YC-17-bound cytochrome P450 PikC (CYP107L1)

Yermalitskaya, L.I., Kim, Y., Sherman, D.H., Waterman, M.R., Podust, L.M.

To be published

Released	2006-12-13
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	HEM, PXI

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2CD8 \| pdb_00002cd8	Download File View File

Crystal structure of YC-17-bound cytochrome P450 PikC (CYP107L1)

Yermalitskaya, L.I., Kim, Y., Sherman, D.H., Waterman, M.R., Podust, L.M.

(2006) J Biological Chem 281: 26289

Released	2007-02-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	HEM, PXI

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2H7X \| pdb_00002h7x	Download File View File

Pikromycin Thioesterase adduct with reduced triketide affinity label

Giraldes, J.W., Akey, D.L., Kittendorf, J.D., Sherman, D.H., Smith, J.S., Fecik, R.A.

(2006) Nat Chem Biol 2: 531-536

Released	2006-09-19
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Streptomyces venezuelae
Macromolecule	Type I polyketide synthase PikAIV (protein)
Unique Ligands	DMS, MG, PSX, SO4

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2H7Y \| pdb_00002h7y	Download File View File

Pikromycin Thioesterase with covalent affinity label

Giraldes, J.W., Akey, D.L., Kittendorf, J.D., Sherman, D.H., Smith, J.S., Fecik, R.A.

(2006) Nat Chem Biol 2: 531-536

Released	2006-09-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces venezuelae
Macromolecule	Type I polyketide synthase PikAIV (protein)
Unique Ligands	DMS, MG, PSK, SO4

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2HFJ \| pdb_00002hfj	Download File View File

Pikromycin thioesterase with covalent pentaketide affinity label

Akey, D.L., Kittendorf, J.D., Giraldes, J.W., Fecik, R.A., Sherman, D.H., Smith, J.L.

(2006) Nat Chem Biol 2: 537-542

Released	2006-09-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Streptomyces venezuelae
Macromolecule	Type I polyketide synthase PikAIV (protein)
Unique Ligands	DMS, MG, SO4, YML

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2HFK \| pdb_00002hfk	Download File View File

Pikromycin thioesterase in complex with product 10-deoxymethynolide

Akey, D.L., Kittendorf, J.D., Giraldes, J.W., Fecik, R.A., Sherman, D.H., Smith, J.L.

(2006) Nat Chem Biol 2: 537-542

Released	2006-09-19
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Streptomyces venezuelae
Macromolecule	Type I polyketide synthase PikAIV (protein)
Unique Ligands	DMS, E4H, MG, SO4

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2LIU \| pdb_00002liu	Download File View File

NMR structure of holo-ACPI domain from CurA module from Lyngbya majuscula

Busche, A.E., Gottstein, D., Hein, C., Ripin, N., Pader, I., Tufar, P., Eisman, E.B., Gu, L., Walsh, C.T., Loehr, F., Sherman, D.H., Guntert, P., Dotsch, V.

(2012) ACS Chem Biol 7: 378-386

Released	2011-12-14
Method	SOLUTION NMR
Organisms	Lyngbya majuscula
Macromolecule	CurA (protein)

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2LIW \| pdb_00002liw	Download File View File

NMR structure of HMG-ACPI domain from CurA module from Lyngbya majuscula

Busche, A.E., Gottstein, D., Hein, C., Ripin, N., Pader, I., Tufar, P., Eisman, E.B., Gu, L., Walsh, C.T., Loehr, F., Sherman, D.H., Guntert, P., Dotsch, V.

(2012) ACS Chem Biol 7: 378-386

Released	2011-12-21
Method	SOLUTION NMR
Organisms	Lyngbya majuscula
Macromolecule	CurA (protein)
Unique Ligands	MAH, PNS

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2VZ7 \| pdb_00002vz7	Download File View File

Crystal structure of the YC-17-bound PikC D50N mutant

Li, S., Sherman, D.H., Podust, L.M.

(2009) J Biological Chem 284: 5723

Released	2008-08-12
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	HEM, PXI

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2VZM \| pdb_00002vzm	Download File View File

Crystal structure of the narbomycin-bound PikC D50N mutant

Li, S., Sherman, D.H., Podust, L.M.

(2009) J Biological Chem 284: 5723

Released	2008-08-12
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	HEM, NRB

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2WHW \| pdb_00002whw	Download File View File

Selective oxidation of carbolide C-H bonds by engineered macrolide P450 monooxygenase

Li, S., Chaulagain, M.R., Knauff, A.R., Podust, L.M., Montgomery, J., Sherman, D.H.

(2009) Proc Natl Acad Sci U S A 106: 18463

Released	2009-10-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	1D4, HEM, SO4

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2WI9 \| pdb_00002wi9	Download File View File

Selective oxidation of carbolide C-H bonds by engineered macrolide P450 monooxygenase

Li, S., Chaulagain, M.R., Knauff, A.R., Podust, L.M., Montgomery, J., Sherman, D.H.

(2009) Proc Natl Acad Sci U S A 106: 18463

Released	2009-10-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 HYDROXYLASE PIKC (protein)
Unique Ligands	1D2, HEM, SO4

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2Y08 \| pdb_00002y08	Download File View File

Structure of the substrate-free FAD-dependent tirandamycin oxidase TamL

Carlson, J.C., Li, S., Gunatilleke, S.S., Anzai, Y., Burr, D.A., Podust, L.M., Sherman, D.H.

(2011) Nat Chem 3: 628

Released	2011-06-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces sp. 307-9
Macromolecule	TAML (protein)
Unique Ligands	CL, FAD, GOL, MG

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2Y3R \| pdb_00002y3r	Download File View File

Structure of the tirandamycin-bound FAD-dependent tirandamycin oxidase TamL in P21 space group

Carlson, J.C., Li, S., Gunatilleke, S.S., Anzai, Y., Burr, D.A., Podust, L.M., Sherman, D.H.

(2011) Nat Chem 3: 628

Released	2011-06-29
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Streptomyces sp. 307-9
Macromolecule	TAML (protein)
Unique Ligands	CL, FAD, GOL, MG, TIR, TRK

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2Y3S \| pdb_00002y3s	Download File View File

Structure of the tirandamycine-bound FAD-dependent tirandamycin oxidase TamL in C2 space group

Carlson, J.C., Li, S., Gunatilleke, S.S., Anzai, Y., Burr, D.A., Podust, L.M., Sherman, D.H.

(2011) Nat Chem 3: 628

Released	2011-06-29
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Streptomyces sp. 307-9
Macromolecule	TAML (protein)
Unique Ligands	CL, FAD, GOL, MG, TIR

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2Y46 \| pdb_00002y46	Download File View File

Structure of the mixed-function P450 MycG in complex with mycinamicin IV in C 2 2 21 space group

Li, S., Kells, P.M., Sherman, D.H., Podust, L.M.

(2012) J Biological Chem 287: 37880

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Micromonospora griseorubida
Macromolecule	P-450-LIKE PROTEIN (protein)
Unique Ligands	BEN, GOL, HEM, MIV

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2Y4G \| pdb_00002y4g	Download File View File

Structure of the Tirandamycin-bound FAD-dependent tirandamycin oxidase TamL in P212121 space group

Carlson, J.C., Li, S., Gunatilleke, S.S., Anzai, Y., Burr, D.A., Podust, L.M., Sherman, D.H.

(2011) Nat Chem 3: 628

Released	2011-06-29
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Streptomyces sp. 307-9
Macromolecule	TAML (protein)
Unique Ligands	CL, FAD, GOL, MG, TIR

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2Y5N \| pdb_00002y5n	Download File View File

Structure of the mixed-function P450 MycG in complex with mycinamicin V in P21 space group

Li, S., Kells, P.M., Sherman, D.H., Podust, L.M.

(2012) J Biological Chem 287: 37880

Released	2012-02-01
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Micromonospora griseorubida
Macromolecule	P-450-LIKE PROTEIN (protein)
Unique Ligands	GOL, HEM, MG, MYV

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2Y5Z \| pdb_00002y5z	Download File View File

Mixed-function P450 MycG in complex with mycinamicin III in C2221 space group

Li, S., Kells, P.M., Sherman, D.H., Podust, L.M.

(2012) J Biological Chem 287: 37880

Released	2012-02-01
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Micromonospora griseorubida
Macromolecule	P-450-LIKE PROTEIN (protein)
Unique Ligands	BEN, GOL, HEM, ZM3

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2Y98 \| pdb_00002y98	Download File View File

Structure of the mixed-function P450 MycG in complex with mycinamicin IV in P21212 space group

Li, S., Kells, P.M., Sherman, D.H., Podust, L.M.

(2012) J Biological Chem 287: 37880

Released	2012-02-22
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Micromonospora griseorubida
Macromolecule	P-450-LIKE PROTEIN (protein)
Unique Ligands	CL, GOL, HEM, MIV, SO4

1 to 25 of 70 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1GWI | pdb_00001gwi

1ODO | pdb_00001odo

2BVJ | pdb_00002bvj

2C6H | pdb_00002c6h

2C7X | pdb_00002c7x

2CA0 | pdb_00002ca0

2CD8 | pdb_00002cd8

2H7X | pdb_00002h7x

2H7Y | pdb_00002h7y

2HFJ | pdb_00002hfj

2HFK | pdb_00002hfk

2LIU | pdb_00002liu

2LIW | pdb_00002liw

2VZ7 | pdb_00002vz7

2VZM | pdb_00002vzm

2WHW | pdb_00002whw

2WI9 | pdb_00002wi9

2Y08 | pdb_00002y08

2Y3R | pdb_00002y3r

2Y3S | pdb_00002y3s

2Y46 | pdb_00002y46

2Y4G | pdb_00002y4g

2Y5N | pdb_00002y5n

2Y5Z | pdb_00002y5z

2Y98 | pdb_00002y98