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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Erb, T.J."

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Search Summary

This query matches 45 Structures.

Refinements

Structure Determination Methodology

experimental (45)

Scientific Name of Source Organism

	synthetic construct (9)
	Methylorubrum extorquens AM1 (7)
	Candida tropicalis (4)
	Escherichia coli K-12 (4)
	Paracoccus denitrificans PD1222 (4)
	Clostridium kluyveri (3)
	Chloroflexus aurantiacus J-10-fl (2)
	Denitrovibrio acetiphilus DSM 12809 (2)
	Methanothermococcus thermolithotrophicus DSM 2095 (2)
	Rhodobacter capsulatus SB 1003 (2)

More...

Taxonomy

	Bacteria (29)
	other sequences (9)
	Eukaryota (4)
	Archaea (3)

Experimental Method

	X-RAY DIFFRACTION (38)
	ELECTRON MICROSCOPY (7)

Polymer Entity Type

Protein (45)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (14)
	2.0 - 2.5 (18)
	2.5 - 3.0 (8)
	3.0 - 3.5 (3)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (13)
	2020 - 2024 (29)
	2025 - 2029 (2)

Enzyme Classification Name

	Oxidoreductases (20)
	Lyases (8)
	Ligases (5)
	Isomerases (2)
	Transferases (1)

Symmetry Type

	Cyclic (24)
	Dihedral (20)
	Asymmetric (1)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	All beta proteins (1)

AllSelected

1 to 25 of 45 Structures

Page 1 of 2

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4GI2 \| pdb_00004gi2	Download File View File

Crotonyl-CoA Carboxylase/Reductase

Weidenweber, S., Erb, T.J., Ermler, U.

To be published

Released	2013-08-14
Method	X-RAY DIFFRACTION 3 Å
Organisms	Methylorubrum extorquens AM1
Macromolecule	Crotonyl-CoA carboxylase/reductase (protein)
Unique Ligands	MG, NAP

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4W99 \| pdb_00004w99	Download File View File

Apo-structure of the Y79F,W322E-double mutant of Etr1p

Quade, N., Voegeli, B., Rosenthal, R., Erb, T.J.

(2015) Nat Chem Biol 11: 398-400

Released	2015-03-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Candida tropicalis
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1, mitochondrial (protein)
Unique Ligands	GOL, SO4

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4WAS \| pdb_00004was	Download File View File

STRUCTURE OF THE ETR1P/NADP/CROTONYL-COA COMPLEX

Quade, N., Voegeli, B., Rosenthal, R., Capitani, G., Erb, T.J.

(2015) Nat Chem Biol 11: 398-400

Released	2015-03-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Candida tropicalis
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1, mitochondrial (protein)
Unique Ligands	COO, NAP

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5LB9 \| pdb_00005lb9	Download File View File

Structure of the T175V Etr1p mutant in the monoclinic form P21

Wagner, T., Rosenthal, R.G., Voegeli, B., Shima, S., Erb, T.J.

(2017) Nat Chem Biol 13: 745-749

Released	2017-05-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Candida tropicalis
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1, mitochondrial (protein)
Unique Ligands	GOL, NA, NAP, SO4

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5LBX \| pdb_00005lbx	Download File View File

Structure of the T175V Etr1p mutant in the trigonal form P312 in complex with NADP and crotonyl-CoA

Wagner, T., Rosenthal, R.G., Voegeli, B., Shima, S., Erb, T.J.

(2017) Nat Chem Biol 13: 745-749

Released	2017-05-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Candida tropicalis
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1, mitochondrial (protein)
Unique Ligands	CL, COO, NAP, SO4

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6EP8 \| pdb_00006ep8	Download File View File

InhA Y158F mutant in complex with NADH from Mycobacterium tuberculosis

Wagner, T., Voegeli, B., Rosenthal, R.G., Stoffel, G., Shima, S., Kiefer, P., Cortina, N., Erb, T.J.

(2018) J Biological Chem 293: 17200-17207

Released	2018-09-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADH] (protein)
Unique Ligands	GOL, MPD, NA, NAD

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6EQO \| pdb_00006eqo	Download File View File

Tri-functional propionyl-CoA synthase of Erythrobacter sp. NAP1 with bound NADP+ and phosphomethylphosphonic acid adenylate ester

Zarzycki, J., Bernhardsgruetter, I., Voegeli, B., Wagner, T., Engilberge, S., Girard, E., Shima, S., Erb, T.J.

(2018) Nat Chem Biol 14: 1127-1132

Released	2018-10-24
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Erythrobacter sp. NAP1
Macromolecule	Acetyl-coenzyme A synthetase (protein)
Unique Ligands	ACP, NAP

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6ES9 \| pdb_00006es9	Download File View File

Methylsuccinyl-CoA dehydrogenase of Paracoccus denitrificans with bound flavin adenine dinucleotide

Zarzycki, J., Schwander, T., Erb, T.J.

(2018) J Biological Chem 293: 1702-1712

Released	2018-01-03
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Paracoccus denitrificans PD1222
Macromolecule	Acyl-CoA dehydrogenase (protein)
Unique Ligands	COA, FAD, SO4

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6ET9 \| pdb_00006et9	Download File View File

Structure of the acetoacetyl-CoA-thiolase/HMG-CoA-synthase complex from Methanothermococcus thermolithotrophicus at 2.75 A

Engilberge, S., Voegeli, B., Girard, E., Riobe, F., Maury, O., Erb, T.J., Shima, S., Wagner, T.

(2018) Proc Natl Acad Sci U S A 115: 3380-3385

Released	2018-03-14
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Methanothermococcus thermolithotrophicus
Macromolecule	Acetyl-CoA acetyltransferase thiolase (protein) HydroxyMethylGlutaryl-CoA synthase (protein) Pfam DUF35 (protein)
Unique Ligands	CL, GOL, K, MG, NA, TRS, ZN

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6GVS \| pdb_00006gvs	Download File View File

Engineered glycolyl-CoA reductase comprising 8 mutations with bound NADP+

Zarzycki, J., Trudeau, D., Scheffen, M., Erb, T.J., Tawfik, D.S.

(2018) Proc Natl Acad Sci U S A 115: E11455-E11464

Released	2018-11-28
Method	X-RAY DIFFRACTION 2.579 Å
Organisms	Rhodopseudomonas palustris BisB18
Macromolecule	Aldehyde dehydrogenase (protein)
Unique Ligands	K, NAP

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6HR7 \| pdb_00006hr7	Download File View File

HMG-CoA reductase from Methanothermococcus thermolithotrophicus apo form at 2.4 A resolution

Wagner, T., Voegeli, B., Erb, T.J., Shima, S.

(2019) FEBS Lett 593: 543-553

Released	2019-02-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methanothermococcus thermolithotrophicus DSM 2095
Macromolecule	HMG-CoA reductase (protein)
Unique Ligands	CL, DTT, GOL, NA, P6G, SO4

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6HR8 \| pdb_00006hr8	Download File View File

HMG-CoA reductase from Methanothermococcus thermolithotrophicus in complex with NADPH at 2.9 A resolution

Wagner, T., Voegeli, B., Erb, T.J., Shima, S.

(2019) FEBS Lett 593: 543-553

Released	2019-02-13
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Methanothermococcus thermolithotrophicus DSM 2095
Macromolecule	HMG-CoA reductase (protein)
Unique Ligands	NA, NAP, PEG, SO4

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6QKB \| pdb_00006qkb	Download File View File

Crystal structure of the beta-hydroxyaspartate aldolase of Paracoccus denitrificans

Zarzycki, J., Schada von Borzyskowski, L., Gilardet, A., Erb, T.J.

(2019) Nature 575: 500-504

Released	2019-08-14
Method	X-RAY DIFFRACTION 1.701 Å
Organisms	Paracoccus denitrificans
Macromolecule	D-3-hydroxyaspartate aldolase (protein)
Unique Ligands	MG, PLP

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6RQA \| pdb_00006rqa	Download File View File

Crystal structure of the iminosuccinate reductase of Paracoccus denitrificans in complex with NAD+

Zarzycki, J., Severi, F., Schada von Borzyskowski, L., Erb, T.J.

(2019) Nature 575: 500-504

Released	2019-08-14
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Paracoccus denitrificans PD1222
Macromolecule	iminosuccinate reductase (protein)
Unique Ligands	7MT, NAD, TB

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6YBP \| pdb_00006ybp	Download File View File

Propionyl-CoA carboxylase of Methylorubrum extorquens with bound CoA

Schuller, J.M., Schuller, S.K., Zarzycki, J., Scheffen, M., Marchal, D.M., Erb, T.J.

(2021) Nat Catal

Released	2020-10-28
Method	ELECTRON MICROSCOPY 3.48 Å
Organisms	Methylorubrum extorquens AM1
Macromolecule	Propionyl-CoA carboxylase alpha subunit (protein) Propionyl-CoA carboxylase beta chain (protein)
Unique Ligands	BTI, COA

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6YBQ \| pdb_00006ybq	Download File View File

Engineered glycolyl-CoA carboxylase (quintuple mutant) with bound CoA

Schuller, J.M., Schuller, S.K., Zarzycki, J., Scheffen, M., Marchal, D.M., Erb, T.J.

(2021) Nat Catal

Released	2020-10-28
Method	ELECTRON MICROSCOPY 1.96 Å
Organisms	Methylorubrum extorquens AM1
Macromolecule	Propionyl-CoA carboxylase alpha subunit (protein) Propionyl-CoA carboxylase beta chain (protein)
Unique Ligands	BTI, COA

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7AYG \| pdb_00007ayg	Download File View File

oxalyl-CoA decarboxylase from Methylorubrum extorquens with bound TPP and ADP

Pfister, P., Burgener, S., Nattermann, M., Zarzycki, J., Erb, T.J.

(2021) ACS Catal 11: 5396-5404

Released	2021-04-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methylorubrum extorquens AM1
Macromolecule	Putative oxalyl-CoA decarboxylase (Oxc, yfdU) (protein)
Unique Ligands	ADP, MG, TPP

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7B2E \| pdb_00007b2e	Download File View File

quadruple mutant of oxalyl-CoA decarboxylase from Methylorubrum extorquens with bound TPP and ADP

Pfister, P., Burgener, S., Nattermann, M., Zarzycki, J., Erb, T.J.

(2021) ACS Catal 11: 5396-5404

Released	2021-04-28
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Methylorubrum extorquens AM1
Macromolecule	Putative oxalyl-CoA decarboxylase (Oxc, yfdU) (protein)
Unique Ligands	ADP, MG, TPP

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7QSV \| pdb_00007qsv	Download File View File

L8-complex forming RubisCO derived from ancestral sequence reconstruction of the last common ancestor of Form I'' and Form I RubisCOs

Zarzycki, J., Schulz, L., Erb, T.J., Hochberg, G.K.A.

(2022) Science 378: 155-160

Released	2022-10-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	synthetic construct
Macromolecule	RubisCO large subunit (protein)
Unique Ligands	CAP, MG

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7QSW \| pdb_00007qsw	Download File View File

L8S8-complex forming RubisCO derived from ancestral sequence reconstruction of the last common ancestor of SSU-bearing Form I RubisCOs

Zarzycki, J., Schulz, L., Erb, T.J., Hochberg, G.K.A.

(2022) Science 378: 155-160

Released	2022-10-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	synthetic construct
Macromolecule	RubisCO large subunit (protein) RubisCO small subunit (protein)
Unique Ligands	CAP, MG

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7QSX \| pdb_00007qsx	Download File View File

Non-obligately L8S8-complex forming RubisCO derived from ancestral sequence reconstruction and rational engineering in L8 complex

Zarzycki, J., Schulz, L., Erb, T.J., Hochberg, G.K.A.

(2022) Science 378: 155-160

Released	2022-10-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	synthetic construct
Macromolecule	RubisCO large subunit (protein)
Unique Ligands	CAP, MG

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7QSY \| pdb_00007qsy	Download File View File

Non-obligately L8S8-complex forming RubisCO derived from ancestral sequence reconstruction and rational engineering in L8S8 complex

Zarzycki, J., Schulz, L., Erb, T.J., Hochberg, G.K.A.

(2022) Science 378: 155-160

Released	2022-10-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	synthetic construct
Macromolecule	RubisCO large subunit (protein) RubisCO small subunit (protein)
Unique Ligands	CAP, MG

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7QSZ \| pdb_00007qsz	Download File View File

Non-obligately L8S8-complex forming RubisCO derived from ancestral sequence reconstruction and rational engineering in L8 complex with substitution e170N

Zarzycki, J., Schulz, L., Erb, T.J., Hochberg, G.K.A.

(2022) Science 378: 155-160

Released	2022-10-12
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	synthetic construct
Macromolecule	RubisCO large subunit (protein)
Unique Ligands	CAP, MG

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7QT1 \| pdb_00007qt1	Download File View File

Non-obligately L8S8-complex forming RubisCO derived from ancestral sequence reconstruction and rational engineering in L8S8 complex with substitution e170N

Zarzycki, J., Schulz, L., Erb, T.J., Hochberg, G.K.A.

(2022) Science 378: 155-160

Released	2022-10-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	synthetic construct
Macromolecule	RubisCO large subunit (protein) RubisCO small subunit (protein)
Unique Ligands	CAP, MG