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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Jia, Y."

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Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

	Homo sapiens (9)
	Mytilus edulis (5)
	Gallus gallus (4)
	Arabidopsis thaliana (2)
	Canavalia ensiformis (2)
	Bos taurus (1)
	Helicobacter pylori (1)
	Momordica charantia (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (23)
	Bacteria (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (18)
	ELECTRON MICROSCOPY (4)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (24)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (7)
	2.0 - 2.5 (8)
	2.5 - 3.0 (1)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (8)
	2010 - 2014 (4)
	2020 - 2024 (8)

Enzyme Classification Name

	Hydrolases (7)
	Isomerases (5)
	Transferases (2)

Membrane Protein Annotation

	MemProtMD (6)
	PDBTM (6)
	mpstruc (6)
	OPM (3)

Symmetry Type

	Asymmetric (14)
	Dihedral (6)
	Cyclic (5)

SCOP Classification

	Alpha and beta proteins (a/b) (5)
	Alpha and beta proteins (a+b) (5)
	All beta proteins (3)
	Small proteins (1)

AllSelected

1 to 24 of 24 Structures

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1F2S \| pdb_00001f2s	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX FORMED BETWEEN BOVINE BETA-TRYPSIN AND MCTI-A, A TRYPSIN INHIBITOR OF SQUASH FAMILY AT 1.8 A RESOLUTION

Zhu, Y., Huang, Q., Qian, M., Jia, Y., Tang, Y.

(1999) J Protein Chem 18: 505-509

Released	2000-06-05
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Bos taurus Momordica charantia
Macromolecule	TRYPSIN (protein) TRYPSIN INHIBITOR A (protein)
Unique Ligands	CA

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1HQW \| pdb_00001hqw	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX OF CONCANAVALIN A WITH A TRIPEPTIDE YPY

Zhang, Z., Qian, M., Huang, Q., Jia, Y., Tang, Y., Wang, K., Cui, D., Li, M.

(2001) J Protein Chem 20: 59-65

Released	2003-10-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Canavalia ensiformis
Macromolecule	CONCANAVALIN A (protein) YPY (protein)
Unique Ligands	CA, MN, PTD

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1JW6 \| pdb_00001jw6	Download File View File

Crystal Structure of the Complex of Concanavalin A and Hexapeptide

Zhang, Z., Qian, M., Huang, Q., Jia, Y., Tang, Y.

(2001) J Protein Chem 20: 423-429

Released	2001-09-26
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Canavalia ensiformis synthetic construct
Macromolecule	Concanavalin A (protein) PROTEIN (6-MER) (protein)
Unique Ligands	CA, IPA, MN, PTD

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1LYO \| pdb_00001lyo	Download File View File

CROSS-LINKED LYSOZYME CRYSTAL IN NEAT WATER

Huang, Q., Wang, Z., Zhu, G., Qian, M., Shao, M., Jia, Y., Tang, Y.

(1998) Biochim Biophys Acta 1384: 335-344

Released	1998-05-27
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME (protein)

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1M1B \| pdb_00001m1b	Download File View File

Crystal Structure of Phosphoenolpyruvate Mutase Complexed with Sulfopyruvate

Liu, S., Lu, Z., Jia, Y., Dunaway-Mariano, D., Herzberg, O.

(2002) Biochemistry 41: 10270-10276

Released	2002-08-28
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mytilus edulis
Macromolecule	PHOSPHOENOLPYRUVATE PHOSPHOMUTASE (protein)
Unique Ligands	MG, SPV

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1S2T \| pdb_00001s2t	Download File View File

Crystal Structure Of Apo Phosphoenolpyruvate Mutase

Liu, S., Lu, Z., Han, Y., Jia, Y., Howard, A., Dunaway-Mariano, D., Herzberg, O.

(2004) Biochemistry 43: 4447-4453

Released	2004-05-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mytilus edulis
Macromolecule	Phosphoenolpyruvate phosphomutase (protein)

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1S2U \| pdb_00001s2u	Download File View File

Crystal structure of the D58A phosphoenolpyruvate mutase mutant protein

Liu, S., Lu, Z., Han, Y., Jia, Y., Howard, A., Dunaway-Mariano, D., Herzberg, O.

(2004) Biochemistry 43: 4447-4453

Released	2004-05-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mytilus edulis
Macromolecule	Phosphoenolpyruvate phosphomutase (protein)
Unique Ligands	PEG

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1S2V \| pdb_00001s2v	Download File View File

Crystal structure of phosphoenolpyruvate mutase complexed with Mg(II)

Liu, S., Lu, Z., Han, Y., Jia, Y., Howard, A., Dunaway-Mariano, D., Herzberg, O.

(2004) Biochemistry 43: 4447-4453

Released	2004-05-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mytilus edulis
Macromolecule	Phosphoenolpyruvate phosphomutase (protein)
Unique Ligands	MG

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1S2W \| pdb_00001s2w	Download File View File

Crystal structure of phosphoenolpyruvate mutase in high ionic strength

Liu, S., Lu, Z., Han, Y., Jia, Y., Howard, A., Dunaway-Mariano, D., Herzberg, O.

(2004) Biochemistry 43: 4447-4453

Released	2004-05-04
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Mytilus edulis
Macromolecule	Phosphoenolpyruvate phosphomutase (protein)
Unique Ligands	SO4

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2LYO \| pdb_00002lyo	Download File View File

CROSS-LINKED CHICKEN LYSOZYME CRYSTAL IN 90% ACETONITRILE-WATER

Huang, Q., Wang, Z., Zhu, G., Qian, M., Shao, M., Jia, Y., Tang, Y.

(1998) Biochim Biophys Acta 1384: 335-344

Released	1998-05-27
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME (protein)
Unique Ligands	CCN

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2M6B \| pdb_00002m6b	Download File View File

Structure of full-length transmembrane domains of human glycine receptor alpha1 monomer subunit

Mowrey, D., Cui, T., Jia, Y., Ma, D., Makhov, A.M., Zhang, P., Tang, P., Xu, Y.

(2013) Structure 21: 1897-1904

Released	2013-09-04
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Full-Length Transmembrane Domains of Human Glycine Receptor alpha1 Subunit (protein)

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2M6I \| pdb_00002m6i	Download File View File

Putative pentameric open-channel structure of full-length transmembrane domains of human glycine receptor alpha1 subunit

Mowrey, D., Cui, T., Jia, Y., Ma, D., Makhov, A.M., Zhang, P., Tang, P., Xu, Y.

(2013) Structure 21: 1897-1904

Released	2013-09-04
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Full-Length Transmembrane Domains of Human Glycine Receptor alpha1 Subunit (protein)

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3LYO \| pdb_00003lyo	Download File View File

CROSS-LINKED CHICKEN LYSOZYME CRYSTAL IN 95% ACETONITRILE-WATER

Huang, Q., Wang, Z., Zhu, G., Qian, M., Shao, M., Jia, Y., Tang, Y.

(1998) Biochim Biophys Acta 1384: 335-344

Released	1998-05-27
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME (protein)
Unique Ligands	CCN

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3MYD \| pdb_00003myd	Download File View File

Structure of the Cytoplasmic domain of FlhA from Helicobacter pylori

Moore, S.A., Jia, Y.

(2010) J Biological Chem 285: 21060-21069

Released	2010-05-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Helicobacter pylori
Macromolecule	Flagellar biosynthesis protein flhA (protein)

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3NEW \| pdb_00003new	Download File View File

p38-alpha complexed with Compound 10

Goedken, E.R., Comess, K.M., Sun, C., Argiriadi, M., Jia, Y., Quinn, C.M., Banach, D.L., Marcotte, D., Borhani, D.

(2011) ACS Chem Biol 6: 234-244

Released	2010-12-01
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 14 (protein)
Unique Ligands	3NE

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4LYO \| pdb_00004lyo	Download File View File

CROSS-LINKED CHICKEN LYSOZYME CRYSTAL IN NEAT ACETONITRILE, THEN BACK-SOAKED IN WATER

Huang, Q., Wang, Z., Zhu, G., Qian, M., Shao, M., Jia, Y., Tang, Y.

(1998) Biochim Biophys Acta 1384: 335-344

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME (protein)

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7BV7 \| pdb_00007bv7	Download File View File

INTS3 complexed with INTS6

Jia, Y., Bharath, S.R., Song, H.

(2021) Cell Discov 7: 66-66

Released	2021-07-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Integrator complex subunit 3 (protein) Integrator complex subunit 6 (protein)

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7CZB \| pdb_00007czb	Download File View File

The cryo-EM structure of the ERAD retrotranslocation channel formed by human Derlin-1

Rao, B., Li, S., Yao, D., Wang, Q., Xia, Y., Jia, Y., Shen, Y., Cao, Y.

(2021) Sci Adv 7:

Released	2021-03-17
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Derlin-1 (protein)

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7KC4 \| pdb_00007kc4	Download File View File

Human WLS in complex with WNT8A

Nygaard, R., Jia, Y., Kim, J., Ross, D., Parisi, G., Clarke, O.B., Virshup, D.M., Mancia, F.

(2021) Cell 184: 194

Released	2021-01-06
Method	ELECTRON MICROSCOPY 3.19 Å
Organisms	Homo sapiens
Macromolecule	Protein Wnt-8a (protein) Protein wntless homolog (protein)
Unique Ligands	DR9, PLM, Y01
Unique branched monosaccharides	BMA, MAN, NAG

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7PA2 \| pdb_00007pa2	Download File View File

PARK7 with inhibitor 8RK64

Kim, R.Q., Jia, Y., Sapmaz, A., Geurink, P.P.

(2022) J Med Chem 65: 13288-13304

Released	2022-08-10
Method	X-RAY DIFFRACTION 1.21 Å
Organisms	Homo sapiens
Macromolecule	Parkinson disease protein 7 (protein)
Unique Ligands	6SI

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7PA3 \| pdb_00007pa3	Download File View File

PARK7 with covalent inhibitor JYQ-88

Kim, R.Q., Jia, Y., Sapmaz, A., Geurink, P.P.

(2022) J Med Chem 65: 13288-13304

Released	2022-08-10
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Homo sapiens
Macromolecule	Parkinson disease protein 7 (protein)
Unique Ligands	6SI

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7Y43 \| pdb_00007y43	Download File View File

Crystal structure of the KAT6A WH domain and its bound double stranded DNA

Wang, Z., Jia, Y.

(2023) Nucleic Acids Res 51: 574-594

Released	2023-01-18
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Histone acetyltransferase KAT6A (protein) DNA (5'-D(GPGPAPGPTPGPCPGPCPAPCPTPCPC)-3') (nucleic acid)
Unique Ligands	MG