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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Nordlund, H.R."

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Homo sapiens (11)
	Xenopus laevis (4)
	Fusobacterium nucleatum (3)
	synthetic construct (2)
	Hepatitis B virus (1)
	Influenza A virus (A/Wilson-Smith/1933(H1N1)) (1)
	Mus musculus (1)
	Saccharomyces cerevisiae (1)
	hepatitis B virus genotype A (1)

Taxonomy

	Eukaryota (14)
	Bacteria (3)
	Riboviria (3)
	other sequences (2)

Experimental Method

X-RAY DIFFRACTION (20)

Polymer Entity Type

	Protein (17)
	DNA (5)
	RNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (3)
	2.0 - 2.5 (4)
	2.5 - 3.0 (6)
	3.0 - 3.5 (2)

Release Date

	2000 - 2004 (5)
	2010 - 2014 (2)
	2015 - 2019 (10)
	2020 - 2024 (3)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

	Cyclic (8)
	Asymmetric (9)

SCOP Classification

	All alpha proteins (13)
	Artifacts (6)
	All beta proteins (1)
	Multi-domain proteins (alpha and beta) (1)

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1 to 20 of 20 Structures

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1F66 \| pdb_00001f66	Download File View File

2.6 A CRYSTAL STRUCTURE OF A NUCLEOSOME CORE PARTICLE CONTAINING THE VARIANT HISTONE H2A.Z

Suto, R.K., Clarkson, M.J., Tremethick, D.J., Luger, K.

(2000) Nat Struct Biol 7: 1121-1124

Released	2000-11-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Mus musculus Xenopus laevis
Macromolecule	HISTONE H2A.Z (protein) HISTONE H2B (protein) HISTONE H3 (protein) HISTONE H4 (protein) PALINDROMIC 146 BASE PAIR DNA FRAGMENT (nucleic acid)
Unique Ligands	MN

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1ID3 \| pdb_00001id3	Download File View File

CRYSTAL STRUCTURE OF THE YEAST NUCLEOSOME CORE PARTICLE REVEALS FUNDAMENTAL DIFFERENCES IN INTER-NUCLEOSOME INTERACTIONS

White, C.L., Suto, R.K., Luger, K.

(2001) EMBO J 20: 5207-5218

Released	2001-09-28
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	HISTONE H2A.1 (protein) HISTONE H2B.2 (protein) HISTONE H3 (protein) HISTONE H4 (protein) PALINDROMIC 146BP DNA FRAGMENT (nucleic acid)
Unique Ligands	MN

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1M18 \| pdb_00001m18	Download File View File

LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA

Suto, R.K., Edayathumangalam, R.S., White, C.L., Melander, C., Gottesfeld, J.M., Dervan, P.B., Luger, K.

(2003) J Mol Biology 326: 371-380

Released	2003-02-18
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Xenopus laevis
Macromolecule	Histone H2A.1 (protein) Histone H2B.1 (protein) Histone H3.2 (protein) Histone H4 (protein) Palindromic 146 Base Pair DNA Fragment (nucleic acid)
Unique Ligands	1SZ, MN

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1M19 \| pdb_00001m19	Download File View File

LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA

Suto, R.K., Edayathumangalam, R.S., White, C.L., Melander, C., Gottesfeld, J.M., Dervan, P.B., Luger, K.

(2003) J Mol Biology 326: 371-380

Released	2003-02-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Xenopus laevis synthetic construct
Macromolecule	Histone H2A type 1 (protein) Histone H2B (protein) Histone H3.3C (protein) Histone H4 (protein) Palindromic 146 Base Pair DNA Fragment (nucleic acid)
Unique Ligands	ABU, BAL, DIB, IMT, MN, PYB

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1M1A \| pdb_00001m1a	Download File View File

LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA

Suto, R.K., Edayathumangalam, R.S., White, C.L., Melander, C., Gottesfeld, J.M., Dervan, P.B., Luger, K.

(2003) J Mol Biology 326: 371-380

Released	2003-02-18
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Xenopus laevis synthetic construct
Macromolecule	Histone H2A type 1 (protein) Histone H2B (protein) Histone H3.3C (protein) Histone H4 (protein) Palindromic 146 Base Pair DNA Fragment (nucleic acid)
Unique Ligands	ABU, BAL, DIB, IMT, MN, PYB

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4J1P \| pdb_00004j1p	Download File View File

X-ray crystal structure of bromodomain 2 of human brd2 in complex with rvx208 to 1.08 A resolution

Stein, A.J., White, A., Suto, R.K.

(2013) PLoS One 8: e83190-e83190

Released	2014-01-15
Method	X-RAY DIFFRACTION 1.08 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain containing 2, isoform CRA_a (protein)
Unique Ligands	1K0, EDO

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4J3I \| pdb_00004j3i	Download File View File

X-ray crystal structure of bromodomain complex to 1.24 A resolution

Stein, A.J., White, A., Suto, R.K.

(2013) PLoS One 8: e83190-e83190

Released	2014-01-15
Method	X-RAY DIFFRACTION 1.24 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	1K0, EDO, NA

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4YH3 \| pdb_00004yh3	Download File View File

Crystal structure of human BRD4(1) in complex with 4-[(2E)-3-(4-methoxyphenyl)-2-phenylprop-2-enoyl]-3,4-dihydroquinoxalin-2(1H)-one (compound 19a)

White, A., Lakshminarasimhan, D., Suto, R.K.

(2015) Bioorg Med Chem Lett 25: 2818-2823

Released	2016-01-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	Y80

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4YH4 \| pdb_00004yh4	Download File View File

Crystal structure of human BRD4(1) in complex with 4-[(5-phenylpyridin-3-yl)carbonyl]-3,4-dihydroquinoxalin-2(1H)-one (compound 19d)

Lakshminarasimhan, D., White, A., Suto, R.K.

(2015) Bioorg Med Chem Lett 25: 2818-2823

Released	2016-01-13
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	GOL, NA, Y81

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5DW1 \| pdb_00005dw1	Download File View File

X-ray crystal structure of human BRD2(BD2) in complex with RVX297 to 1.55 A resolution

White, A., Fontano, E., Suto, R.K.

(2016) Biochem Biophys Res Commun 477: 62-67

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 2 (protein)
Unique Ligands	5GD, NA

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5DW2 \| pdb_00005dw2	Download File View File

X-ray crystal structure of human BRD4(BD1) in complex with RVX297 to 1.12 A resolution

White, A., Fontano, E., Suto, R.K.

(2016) Biochem Biophys Res Commun 477: 62-67

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	5GD, EDO

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5V0U \| pdb_00005v0u	Download File View File

Crystal structure of polymerase acid protein (PA) from Influenza A virus, WILSON-SMITH/1933 (H1N1) bound to follow on fragment EBSI-4723 4-(5-chlorothiophen-2-yl)-1H-pyrazole

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2017-03-08
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Influenza A virus (A/Wilson-Smith/1933(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	8QG

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6CZU \| pdb_00006czu	Download File View File

BRD4(BD1) complexed with 3219

Lakshminarasimhan, D., White, A., Suto, R.K.

(2018) J Med Chem 61: 8202-8211

Released	2018-09-26
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	DMS, EDO, FP7

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6CZV \| pdb_00006czv	Download File View File

BRD4(BD1) complexed with 2759

Lakshminarasimhan, D., White, A., Suto, R.K.

(2018) J Med Chem 61: 8202-8211

Released	2018-09-26
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	EDO, FOY

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6DN1 \| pdb_00006dn1	Download File View File

CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1151 SPLIT RNA

Vicens, Q., Mondragon, E., Reyes, F.E., Berman, J., Kaur, H., Kells, K., Wickens, P., Wilson, J., Gadwood, R., Schostarez, H., Suto, R.K., Coish, P., Blount, K.F., Batey, R.T.

(2018) ACS Chem Biol 13: 2908-2919

Released	2018-09-05
Method	X-RAY DIFFRACTION 3.03 Å
Organisms	Fusobacterium nucleatum
Macromolecule	RNA (57-MER) (nucleic acid) RNA RIBOSWITCH (nucleic acid)
Unique Ligands	GZ7, K, MG

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6DN2 \| pdb_00006dn2	Download File View File

CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1354 SPLIT RNA

Vicens, Q., Mondragon, E., Reyes, F.E., Berman, J., Kaur, H., Kells, K., Wickens, P., Wilson, J., Gadwood, R., Schostarez, H., Suto, R.K., Coish, P., Blount, K.F., Batey, R.T.

(2018) ACS Chem Biol 13: 2908-2919

Released	2018-09-05
Method	X-RAY DIFFRACTION 2.88 Å
Organisms	Fusobacterium nucleatum
Macromolecule	RNA (56-MER) (nucleic acid) RNA RIBOSWITCH (nucleic acid)
Unique Ligands	GZG, K, MG

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6DN3 \| pdb_00006dn3	Download File View File

CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1555 SPLIT RNA

Vicens, Q., Mondragon, E., Reyes, F.E., Berman, J., Kaur, H., Kells, K., Wickens, P., Wilson, J., Gadwood, R., Schostarez, H., Suto, R.K., Coish, P., Blount, K.F., Batey, R.T.

(2018) ACS Chem Biol 13: 2908-2919

Released	2018-09-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Fusobacterium nucleatum
Macromolecule	RNA (56-MER) (nucleic acid) RNA RIBOSWITCH (nucleic acid)
Unique Ligands	CL, GZ4, K, MG