RCSB PDB: Search

4MC0 \| pdb_00004mc0	Download File View File

Hedycaryol apo

Baer, P., Rabe, P., Cirton, C., Oliveira Mann, C., Kaufmann, N., Groll, M., Dickschat, J.

(2014) Chembiochem 15: 213-216

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Kitasatospora setae KM-6054
Macromolecule	Putative sesquiterpene cyclase (protein)

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4MC3 \| pdb_00004mc3	Download File View File

Hedycaryol synthase in complex with Nerolidol

Baer, P., Rabe, P., Cirton, C., Oliveira Mann, C., Kaufmann, N., Groll, M., Dickschat, J.

(2014) Chembiochem 15: 213-216

Released	2014-01-29
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Kitasatospora setae KM-6054
Macromolecule	Putative sesquiterpene cyclase (protein)
Unique Ligands	28U

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4MC8 \| pdb_00004mc8	Download File View File

Hedycaryol synthase in complex with HEPES

Baer, P., Rabe, P., Cirton, C., Oliveira Mann, C., Kaufmann, N., Groll, M., Dickschat, J.

(2014) Chembiochem 15: 213-216

Released	2014-01-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Kitasatospora setae KM-6054
Macromolecule	Putative sesquiterpene cyclase (protein)
Unique Ligands	EPE

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4OKM \| pdb_00004okm	Download File View File

Selinadiene Synthase apo and in complex with diphosphate

Baer, P., Rabe, P., Fischer, K., Citron, C.A., Klapschinski, T., Groll, M., Dickschat, J.S.

(2014) Angew Chem Int Ed Engl 53: 7652-7656

Released	2014-06-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces pristinaespiralis ATCC 25486
Macromolecule	Terpene synthase metal-binding domain-containing protein (protein)
Unique Ligands	MG, PPV

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4OKZ \| pdb_00004okz	Download File View File

Selinadiene Synthase in complex with dihydrofarnesyl pyrophosphate

Baer, P., Rabe, P., Fischer, K., Citron, C.A., Klapschinski, T., Groll, M., Dickschat, J.S.

(2014) Angew Chem Int Ed Engl 53: 7652-7656

Released	2014-06-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptomyces pristinaespiralis ATCC 25486
Macromolecule	Terpene synthase metal-binding domain-containing protein (protein)
Unique Ligands	3E9, MG

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6Y0N \| pdb_00006y0n	Download File View File

Arginine hydroxylase VioC in complex with Arg, 2OG and Fe under anaerobic environment using FT-SSX methods

Rabe, P., Beale, J.H., Lang, P.A., Dirr, S.A., Leissing, T.M., Butryn, A., Aller, P., Kamps, J.J.A.G., Axford, D., McDonough, M.A., Orville, A.M., Owen, R., Schofield, C.J.

(2020) IUCrJ 7: 901-912

Released	2020-09-09
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Streptomyces vinaceus
Macromolecule	Alpha-ketoglutarate-dependent L-arginine hydroxylase (protein)
Unique Ligands	AKG, ARG, FE

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6Y0O \| pdb_00006y0o	Download File View File

isopenicillin N synthase in complex with ACV and Fe under anaerobic environment using FT-SSX methods

Rabe, P., Beale, J.H., Lang, P.A., Dirr, A.S., Leissing, T.M., Butryn, A., Aller, P., Kamps, J.J.A.G., Axford, D., McDonough, M.A., Orville, A.M., Owen, R., Schofield, C.J.

(2020) IUCrJ 7: 901-912

Released	2020-09-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	Anaerobic Fixed Target Structure of Isopenicillin N synthase in complex with Fe and ACV (protein)
Unique Ligands	ACV, FE, SO4

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6Y0P \| pdb_00006y0p	Download File View File

isopenicillin N synthase in complex with IPN and Fe using FT-SSX methods

Rabe, P., Beale, J.H., Lang, P.A., Dirr, A.S., Leissing, T.M., Butryn, A., Aller, P., Kamps, J.J.A.G., Axford, D., McDonough, M.A., Orville, A.M., Owen, R., Schofield, C.J.

(2021) Sci Adv 7:

Released	2021-02-17
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	Isopenicillin N synthase (protein)
Unique Ligands	FE, IP1, SO4

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6Y0Q \| pdb_00006y0q	Download File View File

Alpha-ketoglutarate-dependent dioxygenase AlkB in complex with Fe, AKG and methylated DNA under anaerobic environment using FT-SSX methods

Rabe, P., Beale, J.H., Lang, P.A., Dirr, A.S., Leissing, T.M., Butryn, A., Aller, P., Kamps, J.J.A.G., Axford, D., McDonough, M.A., Orville, A.M., Owen, R., Schofield, C.J.

(2020) IUCrJ 7: 901-912

Released	2020-09-09
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli K-12
Macromolecule	Alpha-ketoglutarate-dependent dioxygenase AlkB (protein)
Unique Ligands	AKG, FE, O5W

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6Y12 \| pdb_00006y12	Download File View File

Arginine hydroxylase VioC in complex with (3S)-OH-Arg, succinate and Fe after oxygen exposure using FT-SSX methods

Rabe, P., Beale, J.H., Lang, P.A., Dirr, A.S., Leissing, T.M., Butryn, A., Aller, P., Kamps, J.J.A.G., Axford, D., McDonough, M.A., Orville, A.M., Owen, R., Schofield, C.J.

(2020) IUCrJ 7: 901-912

Released	2020-09-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces vinaceus
Macromolecule	Alpha-ketoglutarate-dependent L-arginine hydroxylase (protein)
Unique Ligands	FE, SIN, ZZU

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6YPV \| pdb_00006ypv	Download File View File

Alpha-ketoglutarate-dependent dioxygenase AlkB in complex with Fe and AKG after oxygen exposure using FT-SSX methods

Rabe, P., Beale, J.H., Lang, P.A., Dirr, A.S., Leissing, T.M., Butryn, A., Aller, P., Kamps, J.J.A.G., Axford, D., McDonough, M.A., Orville, A.M., Owen, R., Schofield, C.J.

(2020) IUCrJ 7: 901-912

Released	2020-09-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Alpha-ketoglutarate-dependent dioxygenase AlkB (protein)
Unique Ligands	AKG, FE

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6ZAE \| pdb_00006zae	Download File View File

Room temperature XFEL Isopenicillin N synthase structure in complex with Fe and ACV under anaerobic conditions.

Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.

(2021) Sci Adv 7:

Released	2021-06-09
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	Isopenicillin N synthase (protein)
Unique Ligands	ACV, FE2, SO4

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6ZAF \| pdb_00006zaf	Download File View File

Room temperature XFEL Isopenicillin N synthase structure in complex with Fe and ACV after exposure to dioxygen for 400ms.

Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.

(2021) Sci Adv 7:

Released	2021-06-09
Method	X-RAY DIFFRACTION 1.4001 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	Isopenicillin N synthase (protein)
Unique Ligands	ACV, FE2, SO4

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6ZAG \| pdb_00006zag	Download File View File

Room temperature XFEL Isopenicillin N synthase structure in complex with Fe and ACV after exposure to dioxygen for 500ms.

Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.

(2021) Sci Adv 7:

Released	2021-06-09
Method	X-RAY DIFFRACTION 1.4001 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	Isopenicillin N synthase (protein)
Unique Ligands	ACV, FE2, SO4

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6ZAH \| pdb_00006zah	Download File View File

Room temperature XFEL Isopenicillin N synthase structure in complex with Fe and ACV after exposure to dioxygen for 800ms.

Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.

(2021) Sci Adv 7:

Released	2021-06-09
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	Isopenicillin N synthase (protein)
Unique Ligands	ACV, FE2, SO4

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6ZAI \| pdb_00006zai	Download File View File

Room temperature XFEL Isopenicillin N synthase structure in complex with Fe, O2 and ACV after exposure to dioxygen for 1600ms.

Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.

(2021) Sci Adv 7:

Released	2021-06-09
Method	X-RAY DIFFRACTION 1.5501 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	Isopenicillin N synthase (protein)
Unique Ligands	ACV, FE2, OXY, SO4

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6ZAJ \| pdb_00006zaj	Download File View File

Room temperature XFEL Isopenicillin N synthase structure in complex with Fe, O2 and ACV after exposure to dioxygen for 3000ms.

Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.

(2021) Sci Adv 7:

Released	2021-06-09
Method	X-RAY DIFFRACTION 1.5301 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	Isopenicillin N synthase (protein)
Unique Ligands	ACV, FE2, OXY, SO4

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6ZAK \| pdb_00006zak	Download File View File

Room temperature XFEL Isopenicillin N synthase structure in complex with the Fe(IV)=O mimic VO and ACV.

Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.

To be published

Released	2022-01-12
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	Isopenicillin N synthase (protein)
Unique Ligands	ACV, SO4, VVO

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6ZAL \| pdb_00006zal	Download File View File

Room temperature XFEL Isopenicillin N synthase structure in complex with Fe and ACV after exposure to dioxygen for 500ms without glycerol.

Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.

(2021) Sci Adv 7:

Released	2021-06-09
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	Isopenicillin N synthase (protein)
Unique Ligands	ACV, FE2, OXY, SO4

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6ZAM \| pdb_00006zam	Download File View File

Fluorine labeled IPNS S55C in complex with Fe and ACV under anaerobic conditions.

Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.

(2021) Sci Adv 7:

Released	2021-06-09
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	Isopenicillin N synthase (protein)
Unique Ligands	ACV, FE, SO4, W6X, W6Z

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6ZAN \| pdb_00006zan	Download File View File

Isopenicillin N synthase in complex with Fe, the oxygen surrogate NO and ACV.

Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.

(2021) Sci Adv 7:

Released	2021-06-09
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	Isopenicillin N synthase (protein)
Unique Ligands	ACV, FE, NO, SO4

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6ZAO \| pdb_00006zao	Download File View File

Isopenicillin N synthase structure in complex with Fe and IPN exposed to dioxygen.

Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.

(2021) Sci Adv 7:

Released	2021-06-09
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	Isopenicillin N synthase (protein)
Unique Ligands	FE, IP1, SO4

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6ZAP \| pdb_00006zap	Download File View File

Isopenicillin N synthase in complex with Fe, O2 and ACV under cryo conditions.

Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.

(2021) Sci Adv 7:

Released	2021-06-09
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	Isopenicillin N synthase (protein)
Unique Ligands	ACV, FE, OXY, SO4

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6ZAQ \| pdb_00006zaq	Download File View File

Room temperature XFEL Isopenicillin N synthase structure in complex with Fe and IPN after dioxygen exposure

Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.

(2021) Sci Adv 7:

Released	2021-06-09
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	Isopenicillin N synthase (protein)
Unique Ligands	FE2, IP1, SO4

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6ZW8 \| pdb_00006zw8	Download File View File

Isopenicillin N synthase in complex with Cd and ACV.

Rabe, P., Kamps, J.J.A.G., Sutherlin, K., Pharm, C., McDonough, M.A., Leissing, T.M., Aller, P., Butryn, A., Linyard, J., Lang, P., Brem, J., Fuller, F.D., Batyuk, A., Hunter, M.S., Pettinati, I., Clifton, I.J., Alonso-Mori, R., Gul, S., Young, I., Kim, I., Bhowmick, A., ORiordan, L., Brewster, A.S., Claridge, T.D.W., Sauter, N.K., Yachandra, V., Yano, J., Kern, J.F., Orville, A.M., Schofield, C.J.

(2021) Sci Adv 7:

Released	2021-06-09
Method	X-RAY DIFFRACTION 1.22 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	Isopenicillin N synthase (protein)
Unique Ligands	ACV, CD, GOL, SO4

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4MC0 | pdb_00004mc0

4MC3 | pdb_00004mc3

4MC8 | pdb_00004mc8

4OKM | pdb_00004okm

4OKZ | pdb_00004okz

6Y0N | pdb_00006y0n

6Y0O | pdb_00006y0o

6Y0P | pdb_00006y0p

6Y0Q | pdb_00006y0q

6Y12 | pdb_00006y12

6YPV | pdb_00006ypv

6ZAE | pdb_00006zae

6ZAF | pdb_00006zaf

6ZAG | pdb_00006zag

6ZAH | pdb_00006zah

6ZAI | pdb_00006zai

6ZAJ | pdb_00006zaj

6ZAK | pdb_00006zak

6ZAL | pdb_00006zal

6ZAM | pdb_00006zam

6ZAN | pdb_00006zan

6ZAO | pdb_00006zao

6ZAP | pdb_00006zap

6ZAQ | pdb_00006zaq

6ZW8 | pdb_00006zw8