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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Sacco, M."

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Search Summary

This query matches 38 Structures.

Refinements

Structure Determination Methodology

experimental (38)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (16)
	Pseudomonas paraeruginosa PA7 (8)
	Clostridioides difficile R20291 (5)
	synthetic construct (5)
	Pseudomonas aeruginosa PAO1 (4)
	Pseudomonas aeruginosa (2)
	Staphylococcus aureus subsp. aureus COL (2)
	Escherichia coli (1)

Taxonomy

	Bacteria (22)
	Riboviria (16)
	other sequences (5)

Experimental Method

X-RAY DIFFRACTION (38)

Polymer Entity Type

Protein (38)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (12)
	2.0 - 2.5 (16)
	2.5 - 3.0 (5)
	3.0 - 3.5 (3)

Release Date

	2015 - 2019 (7)
	2020 - 2024 (31)

Enzyme Classification Name

	Hydrolases (21)
	Transferases (14)

Symmetry Type

	Cyclic (27)
	Asymmetric (12)

SCOP Classification

	All beta proteins (6)
	Alpha and beta proteins (a+b) (3)
	Multi-domain proteins (alpha and beta) (3)

AllSelected

1 to 25 of 38 Structures

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6UEC \| pdb_00006uec	Download File View File

Pseudomonas aeruginosa LpxD Complex Structure with Ligand

Chen, Y., Kroeck, K., Sacco, M.

(2019) Sci Rep 9: 15450-15450

Released	2019-11-13
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	UDP-3-O-acylglucosamine N-acyltransferase (protein)
Unique Ligands	DMS, MG, Q5M

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6UED \| pdb_00006ued	Download File View File

Apo Pseudomonas aeruginosa LpxD Structure

Chen, Y., Kroeck, K., Sacco, M.

(2019) Sci Rep 9: 15450-15450

Released	2019-11-13
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	UDP-3-O-acylglucosamine N-acyltransferase (protein)
Unique Ligands	GOL, MG

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6UEE \| pdb_00006uee	Download File View File

Pseudomonas aeruginosa LpxA Complex Structure with Ligand

Chen, Y., Kroeck, K., Sacco, M.

(2019) Sci Rep 9: 15450-15450

Released	2019-11-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pseudomonas paraeruginosa PA7
Macromolecule	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (protein)
Unique Ligands	GOL, Q5M

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6UEG \| pdb_00006ueg	Download File View File

Pseudomonas aeruginosa LpxA Complex Structure with Ligand

Chen, Y., Kroeck, K., Sacco, M.

(2019) Sci Rep 9: 15450-15450

Released	2019-11-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas paraeruginosa PA7
Macromolecule	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (protein)
Unique Ligands	CA, Q5G

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6UN1 \| pdb_00006un1	Download File View File

Crystal structure of Pseudomonas aeruginosa PBP3 in complex with temocillin

Sacco, M., Chen, Y.

(2019) Antimicrob Agents Chemother 64:

Released	2019-10-30
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Peptidoglycan D,D-transpeptidase FtsI (protein)
Unique Ligands	TJ7

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6UN3 \| pdb_00006un3	Download File View File

Crystal structure of Pseudomonas aeruginosa PBP3 in complex with ticarcillin

Sacco, M., Chen, Y.

(2019) Antimicrob Agents Chemother 64:

Released	2019-10-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Peptidoglycan D,D-transpeptidase FtsI (protein)
Unique Ligands	CA, GOL, XT8

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6UNB \| pdb_00006unb	Download File View File

Crystal structure of CTX-M-14 in complex with temocillin

Sacco, M., Chen, Y.

(2019) Antimicrob Agents Chemother 64:

Released	2019-10-30
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Escherichia coli
Macromolecule	Beta-lactamase (protein)
Unique Ligands	PO4, TJ7

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6WTT \| pdb_00006wtt	Download File View File

Crystals Structure of the SARS-CoV-2 (COVID-19) main protease with inhibitor GC-376

Sacco, M., Ma, C., Chen, Y., Wang, J.

(2020) Cell Res 30: 678-692

Released	2020-05-20
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	B1S, CL, GOL, K36, MG, PEG

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6XA4 \| pdb_00006xa4	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with UAW241

Sacco, M., Ma, C., Wang, J., Chen, Y.

(2020) Sci Adv 6:

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3C-like proteinase (protein) inhibitor UAW241 (protein)
Unique Ligands	GOL

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6XBG \| pdb_00006xbg	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAW246

Sacco, M., Ma, C., Wang, J., Chen, Y.

(2020) Sci Adv 6:

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3C-like proteinase (protein) inhibitor UAW246 (protein)
Unique Ligands	GOL, NA

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6XBH \| pdb_00006xbh	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAW247

Sacco, M., Ma, C., Wang, J., Chen, Y.

(2020) Sci Adv 6:

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3C-like proteinase (protein) inhibitor UAW247 (protein)
Unique Ligands	GOL, NA

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6XBI \| pdb_00006xbi	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAW248

Sacco, M., Ma, C., Wang, J., Chen, Y.

(2020) Sci Adv 6:

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3C-like proteinase (protein) inhibitor UAW248 (protein)
Unique Ligands	DMS, GOL, NA

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6XFN \| pdb_00006xfn	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with UAW243

Sacco, M., Ma, C., Wang, J., Chen, Y.

(2020) Sci Adv 6:

Released	2020-06-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3C-like proteinase (protein) UAW243 (protein)
Unique Ligands	GOL

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7JRN \| pdb_00007jrn	Download File View File

Crystal structure of the wild type SARS-CoV-2 papain-like protease (PLPro) with inhibitor GRL0617

Sacco, M., Ma, C., Wang, J., Chen, Y.

(2021) ACS Cent Sci 7: 1245-1260

Released	2020-08-26
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 3 (protein)
Unique Ligands	SO4, TTT, ZN

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7K99 \| pdb_00007k99	Download File View File

Crystal Structure of P. aeruginosa LpxC with N-Hydroxyformamide inhibitor 19

Sacco, M., Chen, Y.

(2020) Bioorg Med Chem 28: 115826-115826

Released	2020-11-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	UDP-3-O-acyl-N-acetylglucosamine deacetylase (protein)
Unique Ligands	GOL, SO4, W4M, ZN

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7K9A \| pdb_00007k9a	Download File View File

Crystal Structure of P. aeruginosa LpxC with N-Hydroxyformamide inhibitor

Sacco, M., Chen, Y.

(2020) Bioorg Med Chem 28: 115826-115826

Released	2020-11-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	UDP-3-O-acyl-N-acetylglucosamine deacetylase (protein)
Unique Ligands	DMS, GOL, SO4, W4P, W8P, ZN

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7KX5 \| pdb_00007kx5	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with noncovalent inhibitor Jun8-76-3A

Sacco, M., Wang, J., Chen, Y.

(2021) J Am Chem Soc 143: 20697-20709

Released	2020-12-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	GOL, X7V

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7LYH \| pdb_00007lyh	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAWJ9-36-1

Sacco, M., Wang, J., Chen, Y.

(2021) Acs Pharmacol Transl Sci 4: 1408-1421

Released	2021-03-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	GOL, YHJ

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7LYI \| pdb_00007lyi	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAWJ9-36-3

Sacco, M., Wang, J., Chen, Y.

(2021) Acs Pharmacol Transl Sci 4: 1408-1421

Released	2021-03-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	GOL, NA, YHI

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7RCW \| pdb_00007rcw	Download File View File

Crystal structure of C. difficile penicillin-binding protein 2 in complex with ampicillin

Sacco, M., Chen, Y.

(2022) Nat Commun 13: 4370-4370

Released	2022-03-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Clostridioides difficile R20291
Macromolecule	Penicillin-binding protein (protein)
Unique Ligands	ACT, GOL, PEG, ZN, ZZ7

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7RCX \| pdb_00007rcx	Download File View File

Crystal structure of C. difficile penicillin-binding protein 2 in apo form

Sacco, M., Chen, Y.

(2022) Nat Commun 13: 4370-4370

Released	2022-03-23
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Clostridioides difficile R20291
Macromolecule	Penicillin-binding protein (protein)
Unique Ligands	GOL, SO4, ZN

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7RCY \| pdb_00007rcy	Download File View File

Crystal structure of C. difficile penicillin-binding protein 2 in complex with ceftobiprole

Sacco, M., Chen, Y.

(2022) Nat Commun 13: 4370-4370

Released	2022-03-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Clostridioides difficile R20291
Macromolecule	Penicillin-binding protein (protein)
Unique Ligands	RB6, ZN

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7RCZ \| pdb_00007rcz	Download File View File

Crystal structure of C. difficile SpoVD in complex with ampicillin

Sacco, M., Chen, Y.

(2022) Nat Commun 13: 4370-4370

Released	2022-03-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Clostridioides difficile R20291
Macromolecule	Stage V sporulation protein D (Sporulation specific penicillin-binding protein) (protein)
Unique Ligands	EPE, PEG, POL, SO4, ZN, ZZ7

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7RD0 \| pdb_00007rd0	Download File View File

Crystal structure of C. difficile penicillin-binding protein 3 in apo form

Sacco, M., Chen, Y.

(2022) Nat Commun 13: 4370-4370

Released	2022-03-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Clostridioides difficile R20291
Macromolecule	Penicillin-binding protein (protein)
Unique Ligands	GOL, ZN

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7RN0 \| pdb_00007rn0	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor Jun9-57-3R

Sacco, M., Chen, Y.

(2021) J Am Chem Soc 143: 20697-20709

Released	2021-08-11
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	5ZB, GOL

1 to 25 of 38 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

6UEC | pdb_00006uec

6UED | pdb_00006ued

6UEE | pdb_00006uee

6UEG | pdb_00006ueg

6UN1 | pdb_00006un1

6UN3 | pdb_00006un3

6UNB | pdb_00006unb

6WTT | pdb_00006wtt

6XA4 | pdb_00006xa4

6XBG | pdb_00006xbg

6XBH | pdb_00006xbh

6XBI | pdb_00006xbi

6XFN | pdb_00006xfn

7JRN | pdb_00007jrn

7K99 | pdb_00007k99

7K9A | pdb_00007k9a

7KX5 | pdb_00007kx5

7LYH | pdb_00007lyh

7LYI | pdb_00007lyi

7RCW | pdb_00007rcw

7RCX | pdb_00007rcx

7RCY | pdb_00007rcy

7RCZ | pdb_00007rcz

7RD0 | pdb_00007rd0

7RN0 | pdb_00007rn0