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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Tumbale, P."

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Search Summary

This query matches 35 Structures.

Refinements

Structure Determination Methodology

experimental (35)

Scientific Name of Source Organism

	Escherichia coli (25)
	Escherichia coli K-12 (4)
	Homo sapiens (4)
	Aequorea victoria (2)
	Escherichia coli 55989 (1)
	Escherichia coli O157:H7 (1)
	Pseudomonas protegens Pf-5 (1)
	synthetic construct (1)

Taxonomy

	Bacteria (31)
	Eukaryota (6)
	other sequences (1)

Experimental Method

	ELECTRON MICROSCOPY (20)
	X-RAY DIFFRACTION (15)

Polymer Entity Type

Protein (35)

Refinement Resolution (Å)

	2.0 - 2.5 (4)
	2.5 - 3.0 (3)
	3.0 - 3.5 (14)
	3.5 - 4.0 (7)
	4.0 - 4.5 (7)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (3)
	2015 - 2019 (5)
	2020 - 2024 (25)

Enzyme Classification Name

	Hydrolases (19)
	Isomerases (6)
	Transferases (3)

Symmetry Type

	Asymmetric (24)
	Cyclic (5)
	Dihedral (6)

SCOP Classification

	Alpha and beta proteins (a/b) (4)
	Alpha and beta proteins (a+b) (2)
	Artifacts (2)

AllSelected

1 to 25 of 35 Structures

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3D9H \| pdb_00003d9h	Download File View File

Crystal Structure of the Splice Variant of Human ASB9 (hASB9-2), an Ankyrin Repeat Protein

Fei, X., Gu, X., Fan, S., Zhang, C., Ji, C.

To be published

Released	2009-06-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	cDNA FLJ77766, highly similar to Homo sapiens ankyrin repeat and SOCS box-containing 9 (ASB9), transcript variant 2, mRNA (protein)

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3HWP \| pdb_00003hwp	Download File View File

Crystal structure and computational analyses provide insights into the catalytic mechanism of 2, 4-diacetylphloroglucinol hydrolase PhlG from Pseudomonas fluorescens

He, Y.-X., Huang, L., Xue, Y., Fei, X., Teng, Y.-B., Zhou, C.-Z.

(2010) J Biological Chem 285: 4603-4611

Released	2009-12-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas protegens Pf-5
Macromolecule	PhlG (protein)
Unique Ligands	CL, NI, ZN

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4KI8 \| pdb_00004ki8	Download File View File

Crystal structure of a GroEL-ADP complex in the relaxed allosteric state

Fei, X., Yang, D., LaRonde-LeBlanc, N., Lorimer, G.H.

(2013) Proc Natl Acad Sci U S A 110: E2958-E2966

Released	2013-07-17
Method	X-RAY DIFFRACTION 2.722 Å
Organisms	Escherichia coli
Macromolecule	GroEL protein (protein)
Unique Ligands	ADP, CA, K, MG, MPD

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4PKN \| pdb_00004pkn	Download File View File

Crystal structure of the football-shaped GroEL-GroES2-(ADPBeFx)14 complex containing substrate Rubisco

Fei, X., Ye, X., Laronde-Leblanc, N., Lorimer, G.H.

(2014) Proc Natl Acad Sci U S A 111: 12775-12780

Released	2014-08-20
Method	X-RAY DIFFRACTION 3.66 Å
Organisms	Escherichia coli
Macromolecule	10 kDa chaperonin (protein) 60 kDa chaperonin (protein)
Unique Ligands	ADP, BEF, K, MG

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4PKO \| pdb_00004pko	Download File View File

Crystal structure of the Football-shaped GroEL-GroES2-(ADPBeFx)14 complex

Fei, X., Ye, X., Laronde-Leblanc, N., Lorimer, G.H.

(2014) Proc Natl Acad Sci U S A 111: 12775-12780

Released	2014-08-20
Method	X-RAY DIFFRACTION 3.84 Å
Organisms	Escherichia coli
Macromolecule	10 kDa chaperonin (protein) 60 kDa chaperonin (protein)
Unique Ligands	ADP, BEF, K, MG

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4WGL \| pdb_00004wgl	Download File View File

Crystal structure of a GroEL D83A/R197A double mutant

Yang, D., Fei, X., LaRonde, N.A., Beckett, D., Lund, P.A., Lorimer, G.H.

To be published

Released	2015-09-30
Method	X-RAY DIFFRACTION 3.13 Å
Organisms	Escherichia coli K-12
Macromolecule	60 kDa chaperonin (protein)

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4WSC \| pdb_00004wsc	Download File View File

Crystal structure of a GroELK105A mutant

Lorimer, G.H., Ye, X., Fei, X., Yang, D., Corsepius, N., LaRonde, N.A.

To be published

Released	2015-11-11
Method	X-RAY DIFFRACTION 3.04 Å
Organisms	Escherichia coli K-12
Macromolecule	60 kDa chaperonin (protein)

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5JI2 \| pdb_00005ji2	Download File View File

HslU L199Q in HslUV complex

Grant, R.A., Sauer, R.T., Schmitz, K.R., Baytshtok, V.

(2016) Structure 24: 1766-1777

Released	2016-11-30
Method	X-RAY DIFFRACTION 3.307 Å
Organisms	Escherichia coli 55989 Escherichia coli O157:H7
Macromolecule	ATP-dependent protease ATPase subunit HslU (protein) ATP-dependent protease subunit HslV (protein)
Unique Ligands	ADP, MG

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5JI3 \| pdb_00005ji3	Download File View File

HslUV complex

Grant, R.A., Sauer, R.T., Schmitz, K.R., Baytshtok, V.

(2016) Structure 24: 1766-1777

Released	2016-12-07
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	ATP-dependent protease ATPase subunit HslU (protein) ATP-dependent protease subunit HslV (protein)
Unique Ligands	DAT

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5W0S \| pdb_00005w0s	Download File View File

GroEL using cryoEM

Roh, S.H., Chiu, W.

(2017) Proc Natl Acad Sci U S A 114: 8259-8264

Released	2017-08-09
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Escherichia coli
Macromolecule	60 kDa chaperonin (protein)

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6PO1 \| pdb_00006po1	Download File View File

ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 4

Fei, X., Jenni, S., Harrison, S.C., Sauer, R.T.

(2020) Elife 9:

Released	2020-03-11
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Escherichia coli
Macromolecule	ATP-dependent Clp protease ATP-binding subunit ClpX (protein) ATP-dependent Clp protease proteolytic subunit (protein) substrate peptide (protein)
Unique Ligands	ADP, AGS

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6PO3 \| pdb_00006po3	Download File View File

ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 3

Fei, X., Jenni, S., Harrison, S.C., Sauer, R.T.

(2020) Elife 9:

Released	2020-03-11
Method	ELECTRON MICROSCOPY 4.28 Å
Organisms	Escherichia coli
Macromolecule	ATP-dependent Clp protease ATP-binding subunit ClpX (protein) ATP-dependent Clp protease proteolytic subunit (protein) substrate peptide (protein)
Unique Ligands	ADP, AGS

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6POD \| pdb_00006pod	Download File View File

ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 2

Fei, X., Jenni, S., Harrison, S.C., Sauer, R.T.

(2020) Elife 9:

Released	2020-03-11
Method	ELECTRON MICROSCOPY 4.05 Å
Organisms	Escherichia coli
Macromolecule	ATP-dependent Clp protease ATP-binding subunit ClpX (protein) ATP-dependent Clp protease proteolytic subunit (protein) substrate peptide (protein)
Unique Ligands	ADP, AGS

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6POS \| pdb_00006pos	Download File View File

ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 1

Fei, X., Jenni, S., Harrison, S.C., Sauer, R.T.

(2020) Elife 9:

Released	2020-03-11
Method	ELECTRON MICROSCOPY 4.12 Å
Organisms	Escherichia coli
Macromolecule	ATP-dependent Clp protease ATP-binding subunit ClpX (protein) ATP-dependent Clp protease proteolytic subunit (protein) substrate peptide (protein)
Unique Ligands	ADP, AGS

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6PP5 \| pdb_00006pp5	Download File View File

ClpX in ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 4

Fei, X., Jenni, S., Harrison, S.C., Sauer, R.T.

(2020) Elife 9:

Released	2020-03-11
Method	ELECTRON MICROSCOPY 3.98 Å
Organisms	Escherichia coli
Macromolecule	ATP-dependent Clp protease ATP-binding subunit ClpX (protein) substrate peptide (protein)
Unique Ligands	ADP, AGS

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6PP6 \| pdb_00006pp6	Download File View File

ClpX in ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 3

Fei, X., Jenni, S., Harrison, S.C., Sauer, R.T.

(2020) Elife 9:

Released	2020-03-11
Method	ELECTRON MICROSCOPY 4.28 Å
Organisms	Escherichia coli
Macromolecule	ATP-dependent Clp protease ATP-binding subunit ClpX (protein) substrate peptide (protein)
Unique Ligands	ADP, AGS

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6PP7 \| pdb_00006pp7	Download File View File

ClpX in ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 2

Fei, X., Jenni, S., Harrison, S.C., Sauer, R.T.

(2020) Elife 9:

Released	2020-03-11
Method	ELECTRON MICROSCOPY 4.05 Å
Organisms	Escherichia coli
Macromolecule	ATP-dependent Clp protease ATP-binding subunit ClpX (protein) substrate peptide (protein)
Unique Ligands	ADP, AGS

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6PP8 \| pdb_00006pp8	Download File View File

ClpX in ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 1

Fei, X., Jenni, S., Harrison, S.C., Sauer, R.T.

(2020) Elife 9:

Released	2020-03-11
Method	ELECTRON MICROSCOPY 4.12 Å
Organisms	Escherichia coli
Macromolecule	ATP-dependent Clp protease ATP-binding subunit ClpX (protein) substrate peptide (protein)
Unique Ligands	ADP, AGS

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6PPE \| pdb_00006ppe	Download File View File

ClpP and ClpX IGF loop in ClpX-ClpP complex with D7 symmetry

Fei, X., Jenni, S., Harrison, S.C., Sauer, R.T.

(2020) Elife 9:

Released	2020-03-11
Method	ELECTRON MICROSCOPY 3.19 Å
Organisms	Escherichia coli
Macromolecule	ATP-dependent Clp protease ATP-binding subunit ClpX (protein) ATP-dependent Clp protease proteolytic subunit (protein)

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6PXI \| pdb_00006pxi	Download File View File

The crystal structure of a singly capped HslUV complex with an axial pore plug and a HslU E257Q mutation

Baytshtok, V., Grant, R.A., Sauer, R.T.

(2021) Cell Rep 34: 108639-108639

Released	2020-07-29
Method	X-RAY DIFFRACTION 3.447 Å
Organisms	Escherichia coli
Macromolecule	ATP-dependent protease ATPase subunit HslU (protein) ATP-dependent protease subunit HslV (protein)
Unique Ligands	ADP, SO4

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6PXK \| pdb_00006pxk	Download File View File

3.65 Angstroms resolution structure of HslU with an axial-channel plug

Baytshtok, V., Grant, R.A., Sauer, R.T.

(2021) Cell Rep 34: 108639-108639

Released	2020-07-29
Method	X-RAY DIFFRACTION 3.647 Å
Organisms	Escherichia coli
Macromolecule	ATP-dependent protease ATPase subunit HslU (protein) unidentified alpha helical sequence (protein)
Unique Ligands	ADP, SO4

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6PXL \| pdb_00006pxl	Download File View File

3.74 Angstroms resolution structure of HlsU with an axial-channel plug

Baytshtok, V., Grant, R.A., Sauer, R.T.

(2021) Cell Rep 34: 108639-108639

Released	2020-07-29
Method	X-RAY DIFFRACTION 3.741 Å
Organisms	Escherichia coli
Macromolecule	ATP-dependent protease ATPase subunit HslU (protein)
Unique Ligands	ADP, MG, SO4

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6WR2 \| pdb_00006wr2	Download File View File

ClpP and ClpX IGF loop in ClpX-ClpP complex bound to ssrA tagged GFP

Fei, X., Sauer, R.T.

(2020) Elife 9:

Released	2020-11-04
Method	ELECTRON MICROSCOPY 2.88 Å
Organisms	Escherichia coli K-12
Macromolecule	ATP-dependent Clp protease ATP-binding subunit ClpX (protein) ATP-dependent Clp protease proteolytic subunit (protein)

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6WRF \| pdb_00006wrf	Download File View File

ClpX-ClpP complex bound to GFP-ssrA, recognition complex

Fei, X., Sauer, R.T.

(2020) Elife 9:

Released	2020-11-04
Method	ELECTRON MICROSCOPY 3.14 Å
Organisms	Aequorea victoria Escherichia coli K-12
Macromolecule	ATP-dependent Clp protease ATP-binding subunit ClpX (protein) ATP-dependent Clp protease proteolytic subunit (protein) Green fluorescent protein (protein)
Unique Ligands	ADP, AGS, MG

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6WSG \| pdb_00006wsg	Download File View File

ClpX-ClpP complex bound to ssrA-tagged GFP, intermediate complex

Fei, X., Sauer, R.T.

(2020) Elife 9:

Released	2020-11-04
Method	ELECTRON MICROSCOPY 3.16 Å
Organisms	Aequorea victoria Escherichia coli synthetic construct
Macromolecule	ATP-dependent Clp protease ATP-binding subunit ClpX (protein) ATP-dependent Clp protease proteolytic subunit (protein) Green fluorescent protein, + ssrA tag (protein)
Unique Ligands	AGS, MG

1 to 25 of 35 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3D9H | pdb_00003d9h

3HWP | pdb_00003hwp

4KI8 | pdb_00004ki8

4PKN | pdb_00004pkn

4PKO | pdb_00004pko

4WGL | pdb_00004wgl

4WSC | pdb_00004wsc

5JI2 | pdb_00005ji2

5JI3 | pdb_00005ji3

5W0S | pdb_00005w0s

6PO1 | pdb_00006po1

6PO3 | pdb_00006po3

6POD | pdb_00006pod

6POS | pdb_00006pos

6PP5 | pdb_00006pp5

6PP6 | pdb_00006pp6

6PP7 | pdb_00006pp7

6PP8 | pdb_00006pp8

6PPE | pdb_00006ppe

6PXI | pdb_00006pxi

6PXK | pdb_00006pxk

6PXL | pdb_00006pxl

6WR2 | pdb_00006wr2

6WRF | pdb_00006wrf

6WSG | pdb_00006wsg