RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Xiao, X."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

	Mycobacterium tuberculosis (5)
	Pyrococcus furiosus DSM 3638 (4)
	Streptomyces sp. QL37 (4)
	Homo sapiens (3)
	Macaca mulatta (3)
	Mus musculus (2)
	synthetic construct (2)
	Thermosynechococcus vestitus BP-1 (1)

Taxonomy

	Bacteria (10)
	Eukaryota (8)
	Archaea (4)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (19)
	ELECTRON MICROSCOPY (5)

Polymer Entity Type

	Protein (24)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (5)
	2.0 - 2.5 (8)
	2.5 - 3.0 (3)
	3.0 - 3.5 (3)
	3.5 - 4.0 (2)
	> 4.5 (1)

Release Date

	2010 - 2014 (3)
	2015 - 2019 (10)
	2020 - 2024 (11)

Enzyme Classification Name

Hydrolases (10)

Symmetry Type

	Cyclic (12)
	Asymmetric (12)
	Dihedral (1)

SCOP Classification

Alpha and beta proteins (a/b) (3)

AllSelected

1 to 24 of 24 Structures

Page 1 of 1

Sort by

Explore in 3D

4E88 \| pdb_00004e88	Download File View File

CRYSTAL STRUCTURE OF DE NOVO DESIGNED CYSTEINE ESTERASE ECH13, Northeast Structural Genomics Consortium Target OR51

Kuzin, A., Su, M., Seetharaman, J., Xiao, X., Sahdev, S., Ciccosanti, C., Richter, F., Everett, J.K., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2012-04-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	synthetic construct
Macromolecule	DE NOVO DESIGNED CYSTEINE ESTERASE ECH13 (protein)
Unique Ligands	GOL

Explore in 3D

4HXT \| pdb_00004hxt	Download File View File

Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR329

Vorobiev, S., Su, M., Parmeggiani, F., Seetharaman, J., Huang, P.-S., Maglaqui, M., Xiao, X., Lee, D., Everett, J.K., Acton, T.B., Baker, D., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

(2017) Nat Chem 9: 353-360

Released	2012-11-21
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	synthetic construct
Macromolecule	De Novo Protein OR329 (protein)

Explore in 3D

4IOH \| pdb_00004ioh	Download File View File

Crystal Structure of the Tll1086 protein from Thermosynechococcus elongatus, Northeast Structural Genomics Consortium Target TeR258

Vorobiev, S., Su, M., Seetharaman, J., Maglaqui, M., Xiao, X., Kohan, E., Wang, D., Everett, J.K., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2013-01-30
Method	X-RAY DIFFRACTION 2.53 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Tll1086 protein (protein)

Explore in 3D

5K81 \| pdb_00005k81	Download File View File

Crystal Structure of a Primate APOBEC3G N-Terminal Domain

Xiao, X., Li, S.-X., Yang, H., Chen, X.S.

(2016) Nat Commun 7: 12193-12193

Released	2016-08-10
Method	X-RAY DIFFRACTION 2.006 Å
Organisms	Macaca mulatta
Macromolecule	Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G,Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G (protein)
Unique Ligands	ZN

Explore in 3D

5K82 \| pdb_00005k82	Download File View File

Crystal Structure of a Primate APOBEC3G N-Terminal Domain

Xiao, X., Li, S.-X., Yang, H., Chen, X.S.

(2016) Nat Commun 7: 12193-12193

Released	2016-08-10
Method	X-RAY DIFFRACTION 2.913 Å
Organisms	Macaca mulatta
Macromolecule	Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G,Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G (protein)
Unique Ligands	ZN

Explore in 3D

5K83 \| pdb_00005k83	Download File View File

Crystal Structure of a Primate APOBEC3G N-Domain, in Complex with ssDNA

Xiao, X., Li, S.-X., Yang, H., Chen, X.S.

(2016) Nat Commun 7: 12193-12193

Released	2016-08-10
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Macaca mulatta
Macromolecule	Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G,Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G (protein) DNA (5'-D(TPTPTPTPTPTPTPTPTPT)-3') (nucleic acid)
Unique Ligands	ZN

Explore in 3D

5TKM \| pdb_00005tkm	Download File View File

Crystal structure of human APOBEC3B N-terminal Domain

Xiao, X., Yang, H., Arutiunian, V., Besse, G., Morimoto, C., Zirkle, B., Chen, X.S.

(2017) Nucleic Acids Res 45: 7494-7506

Released	2017-06-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	DNA dC->dU-editing enzyme APOBEC-3B (protein)
Unique Ligands	ZN

Explore in 3D

5W2M \| pdb_00005w2m	Download File View File

APOBEC3F Catalytic Domain Complex with a Single-Stranded DNA

Fang, Y., Xiao, X., Li, S.-X., Wolfe, A., Chen, X.S.

(2018) J Mol Biology 430: 87-101

Released	2017-12-13
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Homo sapiens
Macromolecule	DNA dC->dU-editing enzyme APOBEC-3F (protein) DNA (5'-D(PTPTPTPTPTPTPTPTPTPT)-3') (nucleic acid)
Unique Ligands	ZN

Explore in 3D

5W45 \| pdb_00005w45	Download File View File

Crystal structure of APOBEC3H

Ito, F., Yang, H.J., Xiao, X., Li, S.X., Wolfe, A., Zirkle, B., Arutiunian, V., Chen, X.S.

(2018) Sci Rep 8: 3763-3763

Released	2018-03-14
Method	X-RAY DIFFRACTION 2.486 Å
Organisms	Homo sapiens
Macromolecule	APOBEC3H (protein)
Unique Ligands	ZN

Explore in 3D

5X4H \| pdb_00005x4h	Download File View File

The crystal structure of Pyrococcus furiosus RecJ (wild-type)

Li, M.J., Yi, G.S., Yu, F., Zhou, H., Chen, J.N., Xu, C.Y., Wang, F.P., Xiao, X., He, J.H., Liu, X.P.

(2017) Nucleic Acids Res 45: 12551-12564

Released	2018-02-14
Method	X-RAY DIFFRACTION 2.801 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	MG

Explore in 3D

5X4I \| pdb_00005x4i	Download File View File

Pyrococcus furiosus RecJ (D83A, Mn-soaking)

Li, M.J., Yi, G.S., Yu, F., Zhou, H., Chen, J.N., Xu, C.Y., Wang, F.P., Xiao, X., He, J.H., Liu, X.P.

(2017) Nucleic Acids Res 45: 12551-12564

Released	2018-02-14
Method	X-RAY DIFFRACTION 2.092 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	CL, MN

Explore in 3D

5X4J \| pdb_00005x4j	Download File View File

The crystal structure of Pyrococcus furiosus RecJ (Zn-soaking)

Li, M.J., Yi, G.S., Yu, F., Zhou, H., Chen, J.N., Xu, C.Y., Wang, F.P., Xiao, X., He, J.H., Liu, X.P.

(2017) Nucleic Acids Res 45: 12551-12564

Released	2018-02-14
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	CL, ZN

Explore in 3D

5X4K \| pdb_00005x4k	Download File View File

The complex crystal structure of Pyrococcus furiosus RecJ and CMP

Li, M.J., Yi, G.S., Yu, F., Zhou, H., Chen, J.N., Xu, C.Y., Wang, F.P., Xiao, X., He, J.H., Liu, X.P.

(2017) Nucleic Acids Res 45: 12551-12564

Released	2018-02-14
Method	X-RAY DIFFRACTION 1.749 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	C5P, ZN

Explore in 3D

6YPZ \| pdb_00006ypz	Download File View File

Promiscuous Reductase LugOII Catalyzes Keto-reduction at C1 during Lugdunomycin Biosynthesis

Xiao, X., Elsayed, S.S., Wu, C., van der Heul, H., Prota, A., Huang, J., Guo, R., Abrahams, J.P., van Wezel, G.P.

(2020) ACS Chem Biol 15: 2529-2538

Released	2020-09-16
Method	X-RAY DIFFRACTION 1.08 Å
Organisms	Streptomyces sp. QL37
Macromolecule	Monooxygenase (protein)
Unique Ligands	EDO, NDP, PEG

Explore in 3D

6YQ0 \| pdb_00006yq0	Download File View File

Promiscuous Reductase LugOII Catalyzes Keto-reduction at C1 during Lugdunomycin Biosynthesis

Xiao, X., Elsayed, S.S., Wu, C., van der Heul, H., Prota, A., Huang, J., Guo, R., Abrahams, J.P., van Wezel, G.P.

(2020) ACS Chem Biol 15: 2529-2538

Released	2020-09-16
Method	X-RAY DIFFRACTION 1.08 Å
Organisms	Streptomyces sp. QL37
Macromolecule	Monooxygenase (protein)
Unique Ligands	EDO, NAP, P7K

Explore in 3D

6YQ3 \| pdb_00006yq3	Download File View File

Promiscuous Reductase LugOII Catalyzes Keto-reduction at C1 during Lugdunomycin Biosynthesis

Xiao, X., Elsayed, S.S., Wu, C., van der Heul, H., Prota, A., Huang, J., Guo, R., Abrahams, J.P., van Wezel, G.P.

(2020) ACS Chem Biol 15: 2529-2538

Released	2020-09-16
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Streptomyces sp. QL37
Macromolecule	Monooxygenase (protein)
Unique Ligands	EDO, NAP, P7Q

Explore in 3D

6YQ6 \| pdb_00006yq6	Download File View File

Promiscuous Reductase LugOII Catalyzes Keto-reduction at C1 during Lugdunomycin Biosynthesis

Xiao, X., Elsayed, S.S., Wu, C., van der Heul, H., Prota, A., Huang, J., Guo, R., Abrahams, J.P., van Wezel, G.P.

(2020) ACS Chem Biol 15: 2529-2538

Released	2020-09-16
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Streptomyces sp. QL37
Macromolecule	Monooxygenase (protein)
Unique Ligands	EDO, PEG, SO4

Explore in 3D

7AZN \| pdb_00007azn	Download File View File

Structure of mouse AsterC (GramD1c) with a new cholesterol-derived compound

Romartinez-Alonso, B., Sirvydis, K., Kim, Y., Xiao, X., Jung, M., Tontonoz, P., Schwabe, J.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-01-13
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Mus musculus
Macromolecule	Protein Aster-C (protein)
Unique Ligands	EOH, GOL, YK8

Explore in 3D

8AXW \| pdb_00008axw	Download File View File

The structure of mouse AsterC (GramD1c) with Ezetimibe

Fairall, L., Xiao, X., Burger, L., Tontonoz, P., Schwabe, J.W.R.

(2023) Science 382: eadf0966-eadf0966

Released	2023-09-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	Protein Aster-C (protein)
Unique Ligands	CL, EOH, GOL, H56, PGE

Explore in 3D

8D6V \| pdb_00008d6v	Download File View File

Structure of the Mycobacterium tuberculosis 20S proteasome bound to the C-terminal GQYL motif of the ATP-bound Mpa ATPase

Xiao, X., Li, H.

(2022) mSphere 7: e0027422-e0027422

Released	2022-08-03
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Proteasome subunit alpha (protein) Proteasome subunit beta (protein) Proteasome-associated ATPase (protein)

Explore in 3D

8D6W \| pdb_00008d6w	Download File View File

Structure of the Mycobacterium tuberculosis 20S proteasome bound to the C-terminal GQYL motif of the ADP-bound Mpa ATPase

Xiao, X., Li, H.

(2022) mSphere 7: e0027422-e0027422

Released	2022-08-03
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Proteasome subunit alpha (protein) Proteasome subunit beta (protein) Proteasome-associated ATPase (protein)

Explore in 3D

8D6X \| pdb_00008d6x	Download File View File

Structure of the Mycobacterium tuberculosis 20S proteasome bound to the ATP-bound Mpa ATPase

Xiao, X., Li, H.

(2022) mSphere 7: e0027422-e0027422

Released	2022-08-03
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	AAA ATPase forming ring-shaped complexes (protein) Proteasome subunit alpha (protein) Proteasome subunit beta (protein) Proteasome-associated ATPase (protein)

Explore in 3D

8D6Y \| pdb_00008d6y	Download File View File

Structure of the Mycobacterium tuberculosis 20S proteasome bound to the ADP-bound Mpa ATPase

Xiao, X., Li, H.

(2022) mSphere 7: e0027422-e0027422

Released	2022-08-03
Method	ELECTRON MICROSCOPY 10 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	AAA ATPase forming ring-shaped complexes (protein) Proteasome subunit alpha (protein) Proteasome subunit beta (protein) Proteasome-associated ATPase (protein)

Explore in 3D

8GB3 \| pdb_00008gb3	Download File View File

Structure of the Mycobacterium tuberculosis Hsp70 protein DnaK bound to the nucleotide exchange factor GrpE

Xiao, X., Li, H.

(2024) Nat Commun 15: 660-660

Released	2024-01-31
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Chaperone protein DnaK (protein) Protein GrpE (protein)

1 to 24 of 24 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4E88 | pdb_00004e88

4HXT | pdb_00004hxt

4IOH | pdb_00004ioh

5K81 | pdb_00005k81

5K82 | pdb_00005k82

5K83 | pdb_00005k83

5TKM | pdb_00005tkm

5W2M | pdb_00005w2m

5W45 | pdb_00005w45

5X4H | pdb_00005x4h

5X4I | pdb_00005x4i

5X4J | pdb_00005x4j

5X4K | pdb_00005x4k

6YPZ | pdb_00006ypz

6YQ0 | pdb_00006yq0

6YQ3 | pdb_00006yq3

6YQ6 | pdb_00006yq6

7AZN | pdb_00007azn

8AXW | pdb_00008axw

8D6V | pdb_00008d6v

8D6W | pdb_00008d6w

8D6X | pdb_00008d6x

8D6Y | pdb_00008d6y

8GB3 | pdb_00008gb3