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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Anderson, K.D."

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Streptomyces venezuelae (7)
	Actinomadura vulgaris (1)
	Micromonospora chalcea subsp. izumensis (1)
	Streptomyces fradiae (1)
	Streptomyces sp. CK4412 (1)
	Zymomonas mobilis (1)

Taxonomy

Bacteria (12)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (4)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (4)
	2010 - 2014 (1)
	2020 - 2024 (6)

Enzyme Classification Name

	Transferases (8)
	Hydrolases (2)

Symmetry Type

	Cyclic (11)
	Asymmetric (1)

SCOP Classification

Alpha and beta proteins (a/b) (5)

AllSelected

1 to 12 of 12 Structures

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1PXG \| pdb_00001pxg	Download File View File

Crystal structure of the mutated tRNA-guanine transglycosylase (TGT) D280E complexed with preQ1

Kittendorf, J.D., Sgraja, T., Reuter, K., Klebe, G., Garcia, G.A.

(2003) J Biological Chem 278: 42369-42376

Released	2003-09-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Zymomonas mobilis
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	GOL, PRF, ZN

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2H7X \| pdb_00002h7x	Download File View File

Pikromycin Thioesterase adduct with reduced triketide affinity label

Giraldes, J.W., Akey, D.L., Kittendorf, J.D., Sherman, D.H., Smith, J.S., Fecik, R.A.

(2006) Nat Chem Biol 2: 531-536

Released	2006-09-19
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Streptomyces venezuelae
Macromolecule	Type I polyketide synthase PikAIV (protein)
Unique Ligands	DMS, MG, PSX, SO4

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2H7Y \| pdb_00002h7y	Download File View File

Pikromycin Thioesterase with covalent affinity label

Giraldes, J.W., Akey, D.L., Kittendorf, J.D., Sherman, D.H., Smith, J.S., Fecik, R.A.

(2006) Nat Chem Biol 2: 531-536

Released	2006-09-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces venezuelae
Macromolecule	Type I polyketide synthase PikAIV (protein)
Unique Ligands	DMS, MG, PSK, SO4

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2HFJ \| pdb_00002hfj	Download File View File

Pikromycin thioesterase with covalent pentaketide affinity label

Akey, D.L., Kittendorf, J.D., Giraldes, J.W., Fecik, R.A., Sherman, D.H., Smith, J.L.

(2006) Nat Chem Biol 2: 537-542

Released	2006-09-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Streptomyces venezuelae
Macromolecule	Type I polyketide synthase PikAIV (protein)
Unique Ligands	DMS, MG, SO4, YML

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2HFK \| pdb_00002hfk	Download File View File

Pikromycin thioesterase in complex with product 10-deoxymethynolide

Akey, D.L., Kittendorf, J.D., Giraldes, J.W., Fecik, R.A., Sherman, D.H., Smith, J.L.

(2006) Nat Chem Biol 2: 537-542

Released	2006-09-19
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Streptomyces venezuelae
Macromolecule	Type I polyketide synthase PikAIV (protein)
Unique Ligands	DMS, E4H, MG, SO4

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3LCR \| pdb_00003lcr	Download File View File

Thioesterase from Tautomycetin Biosynthhetic Pathway

Akey, D.L., Scaglione, J.B., Smith, J.L., Sherman, D.H.

(2010) Angew Chem Int Ed Engl 49: 5726-5730

Released	2010-08-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces sp. CK4412
Macromolecule	Tautomycetin biosynthetic PKS (protein)
Unique Ligands	DMS, FMT

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9CBD \| pdb_00009cbd	Download File View File

Pikromycin Thioesterase Domain

McCullough, T.M., Smith, J.L.

(2024) ACS Catal 14: 12551-12563

Released	2024-09-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces venezuelae
Macromolecule	Narbonolide/10-deoxymethynolide synthase PikA4, module 6 (protein)

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9CEL \| pdb_00009cel	Download File View File

Juvenimicin Thioesterase

Akey, D.L., Smith, J.S., Choudhary, V.

(2024) ACS Catal 14: 12551-12563

Released	2024-09-18
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Micromonospora chalcea subsp. izumensis
Macromolecule	Type I PKS module 7 (protein)

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9CFJ \| pdb_00009cfj	Download File View File

Fluvirucin Thioesterase Domain (FluC TE)

Choudhary, V., Smith, J.L.

(2024) ACS Catal 14: 12551-12563

Released	2024-09-18
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Actinomadura vulgaris
Macromolecule	FluC (protein)
Unique Ligands	1PE, GOL

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9CGL \| pdb_00009cgl	Download File View File

Pikromycin Thioesterase Doubly Protected DAP

McCullough, T.M., Smith, J.L.

(2024) ACS Catal 14: 12551-12563

Released	2024-09-18
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Streptomyces venezuelae
Macromolecule	Narbonolide/10-deoxymethynolide synthase PikA4, module 6 (protein)
Unique Ligands	A1AWE

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9CGN \| pdb_00009cgn	Download File View File

Pikromycin Thioesterase with heptaketide adduct

Smith, J.L., Choudhary, V.

(2024) ACS Catal 14: 12551-12563

Released	2024-09-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Streptomyces venezuelae
Macromolecule	Narbonolide/10-deoxymethynolide synthase PikA4, module 6 (protein)
Unique Ligands	A1AWF

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9CGO \| pdb_00009cgo	Download File View File

Tylosin thioesterase domain (TylG5 TE)

Smith, J.L., Choudhary, V.

(2024) ACS Catal 14: 12551-12563

Released	2024-09-18
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Streptomyces fradiae
Macromolecule	Tylactone synthase module 7 (protein)

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1PXG | pdb_00001pxg

Crystal structure of the mutated tRNA-guanine transglycosylase (TGT) D280E complexed with preQ1

2H7X | pdb_00002h7x

Pikromycin Thioesterase adduct with reduced triketide affinity label

2H7Y | pdb_00002h7y

Pikromycin Thioesterase with covalent affinity label

2HFJ | pdb_00002hfj

Pikromycin thioesterase with covalent pentaketide affinity label

2HFK | pdb_00002hfk

Pikromycin thioesterase in complex with product 10-deoxymethynolide

3LCR | pdb_00003lcr

Thioesterase from Tautomycetin Biosynthhetic Pathway

9CBD | pdb_00009cbd

Pikromycin Thioesterase Domain

9CEL | pdb_00009cel

Juvenimicin Thioesterase

9CFJ | pdb_00009cfj

Fluvirucin Thioesterase Domain (FluC TE)

9CGL | pdb_00009cgl

Pikromycin Thioesterase Doubly Protected DAP

9CGN | pdb_00009cgn

Pikromycin Thioesterase with heptaketide adduct

9CGO | pdb_00009cgo

Tylosin thioesterase domain (TylG5 TE)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1PXG | pdb_00001pxg

2H7X | pdb_00002h7x

2H7Y | pdb_00002h7y

2HFJ | pdb_00002hfj

2HFK | pdb_00002hfk

3LCR | pdb_00003lcr

9CBD | pdb_00009cbd

9CEL | pdb_00009cel

9CFJ | pdb_00009cfj

9CGL | pdb_00009cgl

9CGN | pdb_00009cgn

9CGO | pdb_00009cgo