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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Borchardt, D."

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Bacillus thermoproteolyticus (13)
	Escherichia coli (4)
	Pseudomonas aeruginosa (2)
	Escherichia coli (strain K12) (1)
	Tequatrovirus T4 (1)

Taxonomy

	Bacteria (19)
	Duplodnaviria (1)

Experimental Method

X-RAY DIFFRACTION (20)

Polymer Entity Type

Protein (20)

Refinement Resolution (Å)

	1.5 - 2.0 (9)
	2.0 - 2.5 (8)
	2.5 - 3.0 (1)
	4.0 - 4.5 (2)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (12)
	2000 - 2004 (5)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (14)
	Transferases (1)

Symmetry Type

	Asymmetric (20)
	Cyclic (1)

SCOP Classification

	Alpha and beta proteins (a+b) (15)
	Low resolution protein structures (2)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 20 of 20 Structures

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1CX6 \| pdb_00001cx6	Download File View File

T4 LYSOZYME SUBSTITUTED WITH SELENOMETHIONINE

Gassner, N.C., Baase, W.A., Matthews, B.W.

(1999) J Mol Biology 294: 17-20

Released	1999-12-15
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Tequatrovirus T4
Macromolecule	LYSOZYME (protein)
Unique Ligands	CL, HED

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1D8S \| pdb_00001d8s	Download File View File

ESCHERICHIA COLI F1 ATPASE

Hausrath, A.C., Gruber, G., Matthews, B.W., Capaldi, R.A.

(1999) Proc Natl Acad Sci U S A 96: 13697-13702

Released	1999-12-03
Method	X-RAY DIFFRACTION 4.4 Å
Organisms	Escherichia coli
Macromolecule	F1 ATPASE (ALPHA SUBUNIT) (protein) F1 ATPASE (BETA SUBUNIT) (protein) F1 ATPASE (GAMMA SUBUNIT) (protein)

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1EAY \| pdb_00001eay	Download File View File

CHEY-BINDING (P2) DOMAIN OF CHEA IN COMPLEX WITH CHEY FROM ESCHERICHIA COLI

Mcevoy, M.M., Hausrath, A.C., Randolph, G.B., Remington, S.J., Dahlquist, F.W.

(1998) Proc Natl Acad Sci U S A 95: 7333-7338

Released	1998-07-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	CHEA (protein) CHEY (protein)

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1HYT \| pdb_00001hyt	Download File View File

RE-DETERMINATION AND REFINEMENT OF THE COMPLEX OF BENZYLSUCCINIC ACID WITH THERMOLYSIN AND ITS RELATION TO THE COMPLEX WITH CARBOXYPEPTIDASE A

Hausrath, A.C., Matthews, B.W.

(1994) J Biological Chem 269: 18839-18842

Released	1994-07-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	THERMOLYSIN (protein)
Unique Ligands	BZS, CA, DMS, ZN

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1JNV \| pdb_00001jnv	Download File View File

The Conformation of the Epsilon and Gamma Subunits within the E. coli F1 ATPase

Hausrath, A.C., Capaldi, R.A., Matthews, B.W.

(2001) J Biological Chem 276: 47227-47232

Released	2001-12-21
Method	X-RAY DIFFRACTION 4.4 Å
Organisms	Escherichia coli
Macromolecule	ATP SYNTHASE ALPHA CHAIN (protein) ATP SYNTHASE BETA CHAIN (protein) ATP SYNTHASE EPSILON CHAIN (protein) ATP SYNTHASE GAMMA CHAIN (protein)

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1L3F \| pdb_00001l3f	Download File View File

Thermolysin in the Absence of Substrate has an Open Conformation

Hausrath, A.C., Matthews, B.W.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1002-1007

Released	2002-07-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	Thermolysin (protein)
Unique Ligands	CA, ZN

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1LNA \| pdb_00001lna	Download File View File

A STRUCTURAL ANALYSIS OF METAL SUBSTITUTIONS IN THERMOLYSIN

Holland, D.R., Hausrath, A.C., Juers, D., Matthews, B.W.

(1995) Protein Sci 4: 1955-1965

Released	1995-05-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	THERMOLYSIN (protein)
Unique Ligands	CA, CO, DMS, LYS, VAL

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1LNB \| pdb_00001lnb	Download File View File

A STRUCTURAL ANALYSIS OF METAL SUBSTITUTIONS IN THERMOLYSIN

Holland, D.R., Hausrath, A.C., Juers, D., Matthews, B.W.

(1995) Protein Sci 4: 1955-1965

Released	1995-05-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	THERMOLYSIN (protein)
Unique Ligands	CA, DMS, FE, LYS, VAL

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1LNC \| pdb_00001lnc	Download File View File

A STRUCTURAL ANALYSIS OF METAL SUBSTITUTIONS IN THERMOLYSIN

Holland, D.R., Hausrath, A.C., Juers, D., Matthews, B.W.

(1995) Protein Sci 4: 1955-1965

Released	1995-05-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	THERMOLYSIN (protein)
Unique Ligands	CA, DMS, LYS, MN, VAL

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1LND \| pdb_00001lnd	Download File View File

A STRUCTURAL ANALYSIS OF METAL SUBSTITUTIONS IN THERMOLYSIN

Holland, D.R., Hausrath, A.C., Juers, D., Matthews, B.W.

(1995) Protein Sci 4: 1955-1965

Released	1995-05-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	THERMOLYSIN (protein)
Unique Ligands	CA, DMS, LYS, VAL, ZN

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1LNE \| pdb_00001lne	Download File View File

A STRUCTURAL ANALYSIS OF METAL SUBSTITUTIONS IN THERMOLYSIN

Holland, D.R., Hausrath, A.C., Juers, D., Matthews, B.W.

(1995) Protein Sci 4: 1955-1965

Released	1995-05-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	THERMOLYSIN (protein)
Unique Ligands	CA, CD, DMS, LYS, VAL

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1LNF \| pdb_00001lnf	Download File View File

A structural analysis of metal substitutions in thermolysin

Holland, D.R., Matthews, B.W.

(1995) Protein Sci 4: 1955-1965

Released	1995-05-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	THERMOLYSIN (protein)
Unique Ligands	CA, DMS, LYS, VAL, ZN

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1QF0 \| pdb_00001qf0	Download File View File

THERMOLYSIN (E.C.3.4.24.27) COMPLEXED WITH (2-SULPHANYL-3-PHENYLPROPANOYL)-PHE-TYR. PARAMETERS FOR ZN-BIDENTATION OF MERCAPTOACYLDIPEPTIDES IN METALLOENDOPEPTIDASE

Gaucher, J.-F., Selkti, M., Tiraboschi, G., Prange, T., Roques, B.P., Tomas, A., Fournie-Zaluski, M.C.

(1999) Biochemistry 38: 12569-12576

Released	1999-12-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	PROTEIN (THERMOLYSIN) (protein)
Unique Ligands	CA, DMS, TI2, ZN

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1QF1 \| pdb_00001qf1	Download File View File

THERMOLYSIN (E.C.3.4.24.27) COMPLEXED WITH (2-SULPHANYLHEPTANOYL)-PHE-ALA. PARAMETERS FOR ZN-BIDENTATION OF MERCAPTOACYLDIPEPTIDES IN METALLOENDOPEPTIDASE

Gaucher, J.-F., Selkti, M., Tiraboschi, G., Prange, T., Roques, B.P., Tomas, A., Fournie-Zaluski, M.C.

(1999) Biochemistry 38: 12569-12576

Released	1999-12-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	PROTEIN (THERMOLYSIN) (protein)
Unique Ligands	CA, DMS, TI1, ZN

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1QF2 \| pdb_00001qf2	Download File View File

THERMOLYSIN (E.C.3.4.24.27) COMPLEXED WITH (2-SULPHANYL-3-PHENYLPROPANOYL)-GLY-(5-PHENYLPROLINE). PARAMETERS FOR ZN-MONODENTATION OF MERCAPTOACYLDIPEPTIDES IN METALLOENDOPEPTIDASE

Gaucher, J.-F., Selkti, M., Tiraboschi, G., Prange, T., Roques, B.P., Tomas, A., Fournie-Zaluski, M.C.

(1999) Biochemistry 38: 12569-12576

Released	1999-12-29
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	PROTEIN (THERMOLYSIN) (protein)
Unique Ligands	CA, DMS, TI3, ZN

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1TLX \| pdb_00001tlx	Download File View File

THERMOLYSIN (NATIVE)

English, A.C., Done, S.H., Groom, C.R., Hubbard, R.E.

(1999) Proteins 37: 628-640

Released	2000-03-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	THERMOLYSIN (protein)
Unique Ligands	CA, DMS, LYS, VAL, ZN

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1U8T \| pdb_00001u8t	Download File View File

Crystal structure of CheY D13K Y106W alone and in complex with a FliM peptide

Dyer, C.M., Quillin, M.L., Campos, A., Lu, J., McEvoy, M.M., Hausrath, A.C., Westbrook, E.M., Matsumura, P., Matthews, B.W., Dahlquist, F.W.

(2004) J Mol Biology 342: 1325-1335

Released	2004-10-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli Escherichia coli (strain K12)
Macromolecule	Chemotaxis protein cheY (protein) Flagellar motor switch protein fliM (protein)
Unique Ligands	SO4

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2TLX \| pdb_00002tlx	Download File View File

THERMOLYSIN (NATIVE)

English, A.C., Done, S.H., Groom, C.R., Hubbard, R.E.

(1999) Proteins 37: 628-640

Released	2000-03-13
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	THERMOLYSIN (protein)
Unique Ligands	CA, DMS, LYS, VAL, ZN

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6WIS \| pdb_00006wis	Download File View File

Copper resistance protein copG- Form 1

Hausrath, A.C., Ly, A., McEvoy, M.M.

(2020) J Biological Chem 295: 11364-11376

Released	2020-06-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	DUF411 domain-containing protein (protein)
Unique Ligands	ACT, CU, GOL, ZN

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6WJE \| pdb_00006wje	Download File View File

Copper resistance protein copG- Form 2

Hausrath, A.C., Ly, A.T., McEvoy, M.M.

(2020) J Biological Chem 295: 11364-11376

Released	2020-06-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	DUF411 domain-containing protein (protein)
Unique Ligands	ACT, CU, ZN

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1CX6 | pdb_00001cx6

T4 LYSOZYME SUBSTITUTED WITH SELENOMETHIONINE

1D8S | pdb_00001d8s

ESCHERICHIA COLI F1 ATPASE

1EAY | pdb_00001eay

CHEY-BINDING (P2) DOMAIN OF CHEA IN COMPLEX WITH CHEY FROM ESCHERICHIA COLI

1HYT | pdb_00001hyt

RE-DETERMINATION AND REFINEMENT OF THE COMPLEX OF BENZYLSUCCINIC ACID WITH THERMOLYSIN AND ITS RELATION TO THE COMPLEX WITH CARBOXYPEPTIDASE A

1JNV | pdb_00001jnv

The Conformation of the Epsilon and Gamma Subunits within the E. coli F1 ATPase

1L3F | pdb_00001l3f

Thermolysin in the Absence of Substrate has an Open Conformation

1LNA | pdb_00001lna

A STRUCTURAL ANALYSIS OF METAL SUBSTITUTIONS IN THERMOLYSIN

1LNB | pdb_00001lnb

A STRUCTURAL ANALYSIS OF METAL SUBSTITUTIONS IN THERMOLYSIN

1LNC | pdb_00001lnc

A STRUCTURAL ANALYSIS OF METAL SUBSTITUTIONS IN THERMOLYSIN

1LND | pdb_00001lnd

A STRUCTURAL ANALYSIS OF METAL SUBSTITUTIONS IN THERMOLYSIN

1LNE | pdb_00001lne

A STRUCTURAL ANALYSIS OF METAL SUBSTITUTIONS IN THERMOLYSIN

1LNF | pdb_00001lnf

A structural analysis of metal substitutions in thermolysin

1QF0 | pdb_00001qf0

THERMOLYSIN (E.C.3.4.24.27) COMPLEXED WITH (2-SULPHANYL-3-PHENYLPROPANOYL)-PHE-TYR. PARAMETERS FOR ZN-BIDENTATION OF MERCAPTOACYLDIPEPTIDES IN METALLOENDOPEPTIDASE

1QF1 | pdb_00001qf1

THERMOLYSIN (E.C.3.4.24.27) COMPLEXED WITH (2-SULPHANYLHEPTANOYL)-PHE-ALA. PARAMETERS FOR ZN-BIDENTATION OF MERCAPTOACYLDIPEPTIDES IN METALLOENDOPEPTIDASE

1QF2 | pdb_00001qf2

THERMOLYSIN (E.C.3.4.24.27) COMPLEXED WITH (2-SULPHANYL-3-PHENYLPROPANOYL)-GLY-(5-PHENYLPROLINE). PARAMETERS FOR ZN-MONODENTATION OF MERCAPTOACYLDIPEPTIDES IN METALLOENDOPEPTIDASE

1TLX | pdb_00001tlx

THERMOLYSIN (NATIVE)

1U8T | pdb_00001u8t

Crystal structure of CheY D13K Y106W alone and in complex with a FliM peptide

2TLX | pdb_00002tlx

THERMOLYSIN (NATIVE)

6WIS | pdb_00006wis

Copper resistance protein copG- Form 1

6WJE | pdb_00006wje

Copper resistance protein copG- Form 2

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1CX6 | pdb_00001cx6

1D8S | pdb_00001d8s

1EAY | pdb_00001eay

1HYT | pdb_00001hyt

1JNV | pdb_00001jnv

1L3F | pdb_00001l3f

1LNA | pdb_00001lna

1LNB | pdb_00001lnb

1LNC | pdb_00001lnc

1LND | pdb_00001lnd

1LNE | pdb_00001lne

1LNF | pdb_00001lnf

1QF0 | pdb_00001qf0

1QF1 | pdb_00001qf1

1QF2 | pdb_00001qf2

1TLX | pdb_00001tlx

1U8T | pdb_00001u8t

2TLX | pdb_00002tlx

6WIS | pdb_00006wis

6WJE | pdb_00006wje