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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Chen, N."

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Search Summary

This query matches 44 Structures.

Refinements

Structure Determination Methodology

experimental (44)

Scientific Name of Source Organism

	Homo sapiens (36)
	Saccharomyces cerevisiae (5)
	Escherichia coli (4)
	Niallia circulans (4)
	Tequatrovirus T4 (4)
	Schizosaccharomyces pombe (3)
	Escherichia coli K-12 (2)
	synthetic construct (2)
	Lama glama (1)
	Phage display vector pTDisp (1)

Taxonomy

	Eukaryota (44)
	Bacteria (10)
	Duplodnaviria (4)
	other sequences (3)

Experimental Method

	X-RAY DIFFRACTION (27)
	ELECTRON MICROSCOPY (17)

Polymer Entity Type

Protein (44)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (10)
	2.5 - 3.0 (13)
	3.0 - 3.5 (5)
	3.5 - 4.0 (12)
	> 4.5 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2005 - 2009 (9)
	2010 - 2014 (9)
	2015 - 2019 (2)
	2020 - 2024 (22)

Enzyme Classification Name

	Hydrolases (31)
	Transferases (4)
	Oxidoreductases (1)

Membrane Protein Annotation

	PDBTM (13)
	MemProtMD (12)
	OPM (7)
	mpstruc (7)

Symmetry Type

	Asymmetric (33)
	Cyclic (11)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (8)
	All alpha proteins (11)
	All beta proteins (3)
	Alpha and beta proteins (a/b) (2)
	Artifacts (4)
	Small proteins (1)

AllSelected

1 to 25 of 44 Structures

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1D4V \| pdb_00001d4v	Download File View File

Crystal structure of trail-DR5 complex

Mongkolsapaya, J., Grimes, J.M., Stuart, D.I., Jones, E.Y., Screaton, G.R.

(1999) Nat Struct Biol 6: 1048-1053

Released	1999-11-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	DEATH RECEPTOR 5 (protein) TNF-RELATED APOPTOSIS INDUCING LIGAND (protein)

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1Q67 \| pdb_00001q67	Download File View File

Crystal structure of Dcp1p

She, M., Decker, C.J., Liu, Y., Chen, N., Parker, R., Song, H.

(2004) Nat Struct Mol Biol 11: 249-256

Released	2004-03-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Decapping protein involved in mRNA degradation-Dcp1p (protein)

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1XML \| pdb_00001xml	Download File View File

Structure of human Dcps

Chen, N., Song, H.

(2005) J Mol Biology 347: 707-718

Released	2005-03-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	heat shock-like protein 1 (protein)
Unique Ligands	PO4

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1XMM \| pdb_00001xmm	Download File View File

Structure of human Dcps bound to m7GDP

Chen, N., Song, H.

(2005) J Mol Biology 347: 707-718

Released	2005-03-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	heat shock-like protein 1 (protein)
Unique Ligands	G7M, M7G, PO4

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2A6T \| pdb_00002a6t	Download File View File

Crystal structure of S.pombe mRNA decapping enzyme Dcp2p

She, M., Chen, N., Song, H.

(2006) Nat Struct Mol Biol 13: 63-70

Released	2005-12-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Schizosaccharomyces pombe
Macromolecule	SPAC19A8.12 (protein)

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2QKL \| pdb_00002qkl	Download File View File

The crystal structure of fission yeast mRNA decapping enzyme Dcp1-Dcp2 complex

She, M., Chen, N., Song, H.

(2008) Mol Cell 29: 337-349

Released	2008-03-25
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Schizosaccharomyces pombe
Macromolecule	SPAC19A8.12 protein (protein) SPBC3B9.21 protein (protein)
Unique Ligands	PB

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2QKM \| pdb_00002qkm	Download File View File

The crystal structure of fission yeast mRNA decapping enzyme Dcp1-Dcp2 complex

She, M., Song, H.

(2008) Mol Cell 29: 337-349

Released	2008-04-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Schizosaccharomyces pombe
Macromolecule	SPAC19A8.12 protein (protein) SPBC3B9.21 protein (protein)
Unique Ligands	ATP

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3CP9 \| pdb_00003cp9	Download File View File

Crystal structure of the VEGFR2 kinase domain in complex with a pyridone inhibitor

Whittington, D.A., Long, A.M., Rose, P., Gu, Y., Zhao, H.

(2008) J Med Chem 51: 3065-3068

Released	2008-06-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Vascular endothelial growth factor receptor 2 (protein)
Unique Ligands	C19

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3CPB \| pdb_00003cpb	Download File View File

Crystal structure of the VEGFR2 kinase domain in complex with a bisamide inhibitor

Whittington, D.A., Long, A.M., Rose, P., Gu, Y., Zhao, H.

(2008) J Med Chem 51: 3065-3068

Released	2008-06-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Vascular endothelial growth factor receptor 2 (protein)
Unique Ligands	C92

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3CPC \| pdb_00003cpc	Download File View File

Crystal structure of the VEGFR2 kinase domain in complex with a pyridone inhibitor

Whittington, D.A., Long, A.M., Rose, P., Gu, Y., Zhao, H.

(2008) J Med Chem 51: 3065-3068

Released	2008-06-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Vascular endothelial growth factor receptor 2 (protein)
Unique Ligands	C52

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3DTW \| pdb_00003dtw	Download File View File

Crystal structure of the VEGFR2 kinase domain in complex with a benzisoxazole inhibitor

Whittington, D.A., Long, A.M., Rose, P., Gu, Y., Zhao, H.

(2008) Bioorg Med Chem Lett 18: 5115-5117

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Vascular endothelial growth factor receptor 2 (protein)
Unique Ligands	A96

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4DDL \| pdb_00004ddl	Download File View File

PDE10a Crystal Structure Complexed with Novel Inhibitor

Chmait, S., Jordan, S., Zhang, J.

(2012) Bioorg Med Chem Lett 22: 2262-2265

Released	2012-03-21
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Homo sapiens
Macromolecule	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A (protein)
Unique Ligands	0JQ, SO4, ZN

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4GAZ \| pdb_00004gaz	Download File View File

Crystal Structure of a Jumonji Domain-containing Protein JMJD5

Wang, H., Zhou, X., Zhang, X., Tao, Y., Chen, N., Zang, J.

To be published

Released	2013-08-14
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 8 (protein)
Unique Ligands	NI, OGA

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4HEU \| pdb_00004heu	Download File View File

Crystal Structure of PDE10A with a biaryl ether inhibitor ((1-(3-(4-((1H-benzo[d]imidazol-2-yl)amino)phenoxy)pyridin-2-yl)piperidin-4-yl)methanol)

Chmait, S., Jordan, S.

(2012) Bioorg Med Chem Lett 22: 7371-7375

Released	2012-12-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A (protein)
Unique Ligands	15J, SO4, ZN

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4HF4 \| pdb_00004hf4	Download File View File

Crystal Structure of PDE10A with a biaryl ether inhibitor (1-(1-(3-(4-(benzo[d]thiazol-2-ylamino)phenoxy)pyrazin-2-yl)piperidin-4-yl)ethanol)

Chmait, S., Jordan, S.

(2012) Bioorg Med Chem Lett 22: 7371-7375

Released	2012-12-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A (protein)
Unique Ligands	15H, GOL, SO4, ZN

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4MUW \| pdb_00004muw	Download File View File

Crystal Structure of PDE10A with Novel Keto-Benzimidazole Inhibitor

Chmait, S., Jordan, S.

(2013) J Med Chem 56: 8781-8792

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.639 Å
Organisms	Homo sapiens
Macromolecule	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A (protein)
Unique Ligands	2F4, GOL, SO4, ZN

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4MVH \| pdb_00004mvh	Download File View File

Crystal Structure of PDE10A with Novel Keto-Benzimidazole Inhibitor

Chmait, S., Jordan, S.

(2013) J Med Chem 56: 8781-8792

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.496 Å
Organisms	Homo sapiens
Macromolecule	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A (protein)
Unique Ligands	2F5, SO4, ZN

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4PHW \| pdb_00004phw	Download File View File

Crystal Structure of PDE10A with 1H-benzimidazol-2-yl(4-((3-(tetrahydro-2H-pyran-4-yl)-2-pyridinyl)oxy)phenyl)methanone

Chmait, S.

(2014) J Med Chem 57: 6632-6641

Released	2014-08-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A (protein)
Unique Ligands	2W1, SO4, ZN

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4TPM \| pdb_00004tpm	Download File View File

Crystal structure of 2-(3-alkoxy-1-azetidinyl) quinolines as PDE10A Inhibitors

Chmait, S.

(2014) Bioorg Med Chem 22: 6570-6585

Released	2014-12-17
Method	X-RAY DIFFRACTION 2.77 Å
Organisms	Homo sapiens
Macromolecule	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A (protein)
Unique Ligands	35E, GOL, SO4, ZN

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4TPP \| pdb_00004tpp	Download File View File

2-(3-alkoxy-1-azetidinyl) quinolines as novel PDE10A inhibitors

Chmait, S.

(2014) Bioorg Med Chem 22: 6570-6585

Released	2014-12-17
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A (protein)
Unique Ligands	35D, GOL, SO4, ZN

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6PGO \| pdb_00006pgo	Download File View File

Crystal structure of human KRAS G12C covalently bound to a phthalazine inhibitor

Mohr, C.

(2020) J Med Chem 63: 52-65

Released	2019-12-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	GDP, MG, OJ1

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6PGP \| pdb_00006pgp	Download File View File

Crystal structure of human KRAS G12C covalently bound to a quinazolinone inhibitor

Mohr, C., Whittington, D.A.

(2020) J Med Chem 63: 52-65

Released	2019-12-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	CA, GDP, OHY

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6WNY \| pdb_00006wny	Download File View File

Crystal structure of BACE1 in complex with (Z)-fluoro-olefin containing compound 15

Whittington, D.A.

(2020) Bioorg Med Chem Lett 30: 127240-127240

Released	2020-06-03
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	IOD, U64

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7MI1 \| pdb_00007mi1	Download File View File

X-ray structure of yeast dynein motor domain in the presence of a pyrazolo-pyrimidinone-based compound (compound 20)

Santarossa, C.C., Ekiert, D.C., Bhabha, G., Kapoor, T.M.

(2021) Cell Chem Biol 28: 1460-1473.e15

Released	2021-05-26
Method	X-RAY DIFFRACTION 4.5 Å
Organisms	Saccharomyces cerevisiae Tequatrovirus T4
Macromolecule	Chimera protein of Dynein and Endolysin (protein)

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7MI3 \| pdb_00007mi3	Download File View File

Signal subtracted reconstruction of AAA2, AAA3, and AAA4 domains of dynein in the presence of a pyrazolo-pyrimidinone-based compound, Model 4

Santarossa, C.C., Coudray, N., Urnavicius, L., Ekiert, D.C., Bhabha, G., Kapoor, T.M.

(2021) Cell Chem Biol 28: 1460-1473.e15

Released	2021-05-26
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Saccharomyces cerevisiae Tequatrovirus T4
Macromolecule	Fusion protein of Dynein and Endolysin (protein)
Unique Ligands	ATP, MG, ZG7

1 to 25 of 44 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1D4V | pdb_00001d4v

1Q67 | pdb_00001q67

1XML | pdb_00001xml

1XMM | pdb_00001xmm

2A6T | pdb_00002a6t

2QKL | pdb_00002qkl

2QKM | pdb_00002qkm

3CP9 | pdb_00003cp9

3CPB | pdb_00003cpb

3CPC | pdb_00003cpc

3DTW | pdb_00003dtw

4DDL | pdb_00004ddl

4GAZ | pdb_00004gaz

4HEU | pdb_00004heu

4HF4 | pdb_00004hf4

4MUW | pdb_00004muw

4MVH | pdb_00004mvh

4PHW | pdb_00004phw

4TPM | pdb_00004tpm

4TPP | pdb_00004tpp

6PGO | pdb_00006pgo

6PGP | pdb_00006pgp

6WNY | pdb_00006wny

7MI1 | pdb_00007mi1

7MI3 | pdb_00007mi3