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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "D'Alessio, C."

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Search Summary

This query matches 54 Structures.

Refinements

Structure Determination Methodology

experimental (54)

Scientific Name of Source Organism

	Homo sapiens (24)
	Saccharomyces cerevisiae (20)
	synthetic construct (16)
	Mus musculus (5)
	Saccharomyces cerevisiae S288C (4)
	Synechocystis sp. PCC 6714 (3)
	Bos taurus (2)
	Rattus norvegicus (2)
	Acinetobacter baylyi ADP1 (1)
	Escherichia coli K-12 (1)

More...

Taxonomy

	Eukaryota (48)
	other sequences (16)
	Bacteria (7)

Experimental Method

	ELECTRON MICROSCOPY (50)
	X-RAY DIFFRACTION (4)

Polymer Entity Type

	Protein (54)
	DNA (12)
	RNA (11)

Refinement Resolution (Å)

	2.0 - 2.5 (1)
	2.5 - 3.0 (9)
	3.0 - 3.5 (10)
	3.5 - 4.0 (15)
	4.0 - 4.5 (7)
	> 4.5 (12)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (11)
	2020 - 2024 (41)

Enzyme Classification Name

	Transferases (31)
	Hydrolases (23)
	Ligases (5)

Symmetry Type

	Asymmetric (43)
	Cyclic (7)
	Dihedral (4)
	Helical (1)

SCOP Classification

	All beta proteins (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 54 Structures

Page 1 of 3

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3J1T \| pdb_00003j1t	Download File View File

High affinity dynein microtubule binding domain - tubulin complex

Redwine, W.B., Hernandez-Lopez, R., Zou, S., Huang, J., Reck-Peterson, S.L., Leschziner, A.E.

(2012) Science 337: 1532-1536

Released	2012-09-26
Method	ELECTRON MICROSCOPY 9.7 Å
Organisms	Bos taurus Mus musculus
Macromolecule	Cytoplasmic dynein 1 heavy chain 1, seryl t-RNA synthetase chimera (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)

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3J1U \| pdb_00003j1u	Download File View File

Low affinity dynein microtubule binding domain - tubulin complex

Redwine, W.B., Hernandez-Lopez, R., Zou, S., Huang, J., Reck-Peterson, S.L., Leschziner, A.E.

(2012) Science 337: 1532-1536

Released	2012-09-26
Method	ELECTRON MICROSCOPY 9.7 Å
Organisms	Bos taurus Mus musculus
Macromolecule	Cytoplasmic dynein 1 heavy chain 1, seryl t-RNA synthetase chimera (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)

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5TGC \| pdb_00005tgc	Download File View File

Structure of the hetero-trimer of Rtt102-Arp7/9 bound to ATP

Turegun, B., Dominguez, R.

(2018) Commun Biol 1:

Released	2017-09-06
Method	X-RAY DIFFRACTION 3.245 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Actin-like protein ARP9 (protein) Actin-related protein 7 (protein) Regulator of Ty1 transposition protein 102 (protein)
Unique Ligands	ATP, SO4

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5VH9 \| pdb_00005vh9	Download File View File

Cryo-EM structure of yeast cytoplasmic dynein-1 with Lis1 and ATP

Cianfrocco, M.A., DeSantis, M.E., Htet, Z.M., Tran, P.T., Reck-Peterson, S.L., Leschziner, A.E.

(2017) Cell 170: 1197-1208.e12

Released	2017-09-06
Method	ELECTRON MICROSCOPY 7.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Dynein heavy chain, cytoplasmic (protein) Nuclear distribution protein PAC1 (protein)

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5VLJ \| pdb_00005vlj	Download File View File

Cryo-EM structure of yeast cytoplasmic dynein with Walker B mutation at AAA3 in presence of ATP-VO4

Cianfrocco, M.A., DeSantis, M.E., Htet, Z.M., Tran, P.T., Reck-Peterson, S.L., Leschziner, A.E.

(2017) Cell 170: 1197-1208.e12

Released	2017-09-06
Method	ELECTRON MICROSCOPY 10.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Dynein heavy chain, cytoplasmic (protein) Nuclear distribution protein PAC1 (protein)

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5VVR \| pdb_00005vvr	Download File View File

Ternary complex of RNA Pol II, transcription scaffold and Rad26

Lahiri, I., Leschziner, A.E.

(2017) Nature 551: 653-657

Released	2017-11-22
Method	ELECTRON MICROSCOPY 5.8 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 13 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

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5VVS \| pdb_00005vvs	Download File View File

RNA pol II elongation complex

Lahiri, I., Leschziner, A.E.

(2017) Nature 551: 653-657

Released	2017-11-22
Method	ELECTRON MICROSCOPY 6.4 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 12 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

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5WRR \| pdb_00005wrr	Download File View File

Crystal structure of Fam20A

Zhu, Q.

(2017) Elife 6:

Released	2017-05-03
Method	X-RAY DIFFRACTION 2.506 Å
Organisms	Homo sapiens
Macromolecule	Pseudokinase FAM20A (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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5WRS \| pdb_00005wrs	Download File View File

Crystal Structure of Fam20A in complex with ATP

Zhu, Q.

(2017) Elife 6:

Released	2017-05-03
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Pseudokinase FAM20A (protein)
Unique Ligands	ATP, NAG
Unique branched monosaccharides	NAG

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6DRV \| pdb_00006drv	Download File View File

Beta-galactosidase

Cianfrocco, M.A., Lahiri, I., DiMaio, F., Leschziner, A.E.

(2018) J Struct Biol 203: 230-235

Released	2018-07-11
Method	ELECTRON MICROSCOPY 2.2 Å
Organisms	Escherichia coli K-12
Macromolecule	Beta-galactosidase (protein)

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6O6C \| pdb_00006o6c	Download File View File

RNA polymerase II elongation complex arrested at a CPD lesion

Lahiri, I., Leshziner, A.E.

(2019) J Struct Biol 207: 270-278

Released	2019-06-26
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

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6OWO \| pdb_00006owo	Download File View File

CRYO-EM STRUCTURE OF PHOSPHORYLATED AP-2 CORE BOUND TO NECAP

Partlow, E.A., Baker, R.W., Beacham, G.M., Chappie, J.S., Leschziner, A.E., Hollopeter, G.

(2019) Elife 8:

Released	2019-09-11
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	AP-2 complex subunit alpha-2 (protein) AP-2 complex subunit beta (protein) AP-2 complex subunit mu (protein) AP-2 complex subunit sigma (protein) Adaptin ear-binding coat-associated protein 2 (protein)

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6OXL \| pdb_00006oxl	Download File View File

CRYO-EM STRUCTURE OF PHOSPHORYLATED AP-2 (mu E302K) BOUND TO NECAP IN THE PRESENCE OF SS DNA

Partlow, E.A., Baker, R.W., Beacham, G.M., Chappie, J., Leschziner, A.E., Hollopeter, G.

(2019) Elife 8:

Released	2019-09-11
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Unique protein chains: 6

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6V9H \| pdb_00006v9h	Download File View File

Ankyrin repeat and SOCS-box protein 9 (ASB9), ElonginB (ELOB), and ElonginC (ELOC) bound to its substrate Brain-type Creatine Kinase (CKB)

Komives, E.A., Lumpkin, R.J., Baker, R.W., Leschziner, A.E.

(2020) Nat Commun 11: 2866-2866

Released	2020-04-29
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Homo sapiens
Macromolecule	Ankyrin repeat and SOCS box protein 9 (protein) Creatine kinase B-type (protein) Elongin-B (protein) Elongin-C (protein)

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6V9I \| pdb_00006v9i	Download File View File

cryo-EM structure of Cullin5 bound to RING-box protein 2 (Cul5-Rbx2)

Komives, E.A., Lumpkin, R.J., Baker, R.W., Leschziner, A.E.

(2020) Nat Commun 11: 2866-2866

Released	2020-04-29
Method	ELECTRON MICROSCOPY 5.2 Å
Organisms	Homo sapiens Mus musculus Streptococcus sp. 'group G
Macromolecule	Immunoglobulin G-binding protein G,Cullin-5 (protein) RING-box protein 2 (protein)
Unique Ligands	ZN

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6VNO \| pdb_00006vno	Download File View File

Cryo-EM structure of the C-terminal half of the Parkinson's Disease-linked protein Leucine Rich Repeat Kinase 2 (LRRK2)

Leschziner, A., Deniston, C., Lahiri, I.

(2020) Nature 588: 344-349

Released	2020-08-26
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Leucine-rich repeat serine/threonine-protein kinase 2 (protein)
Unique Ligands	GDP, MG

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6VP6 \| pdb_00006vp6	Download File View File

Cryo-EM structure of the C-terminal half of the Parkinson's Disease-linked protein Leucine Rich Repeat Kinase 2 (LRRK2)

Leschziner, A., Deniston, C., Lahiri, I.

(2020) Nature 588: 344-349

Released	2020-08-26
Method	ELECTRON MICROSCOPY 3.47 Å
Organisms	Homo sapiens
Macromolecule	Leucine-rich repeat serine/threonine-protein kinase 2 (protein)
Unique Ligands	GDP, MG

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6VP7 \| pdb_00006vp7	Download File View File

Cryo-EM structure of the C-terminal half of the Parkinson's Disease-linked protein Leucine Rich Repeat Kinase 2 (LRRK2)

Leschziner, A., Deniston, C., Lahiri, I.

(2020) Nature 588: 344-349

Released	2020-08-26
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Leucine-rich repeat serine/threonine-protein kinase 2 (protein)

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6VP8 \| pdb_00006vp8	Download File View File

Cryo-EM structure of the C-terminal half of the Parkinson's Disease-linked protein Leucine Rich Repeat Kinase 2 (LRRK2)

Leschziner, A., Deniston, C., Lahiri, I.

(2020) Nature 588: 344-349

Released	2020-08-26
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Leucine-rich repeat serine/threonine-protein kinase 2 (protein)

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6VZ4 \| pdb_00006vz4	Download File View File

Cryo-EM structure of Sth1-Arp7-Arp9-Rtt102 bound to the nucleosome in ADP Beryllium Fluoride state

Leschziner, A.E., Baker, R.W.

(2021) Nat Struct Mol Biol 28: 71-80

Released	2020-12-02
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae S288C Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 8 Unique nucleic acid chains: 2
Unique Ligands	ADP, ATP, BEF, MG

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6VZG \| pdb_00006vzg	Download File View File

Cryo-EM structure of Sth1-Arp7-Arp9-Rtt102

Leschziner, A.E., Baker, R.W.

(2021) Nat Struct Mol Biol 28: 71-80

Released	2020-12-02
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae S288C
Macromolecule	Actin-like protein ARP9 (protein) Actin-related protein 7 (protein) Nuclear protein STH1/NPS1 (protein) Regulator of Ty1 transposition protein 102 (protein)
Unique Ligands	ATP

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7LG5 \| pdb_00007lg5	Download File View File

Synechocystis sp. UTEX2470 Cyanophycin synthetase 1 with ATP

Sharon, I., Schmeing, T.M.

(2021) Nat Chem Biol 17: 1101-1110

Released	2021-08-18
Method	ELECTRON MICROSCOPY 2.63 Å
Organisms	Synechocystis sp. PCC 6714
Macromolecule	Cyanophycin synthase (protein)
Unique Ligands	ATP, MG

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7LGJ \| pdb_00007lgj	Download File View File

Cyanophycin synthetase 1 from Synechocystis sp. UTEX2470 with ADPCP and 8x(Asp-Arg)-NH2

Sharon, I., Grogg, M., Hilvert, D., Schmeing, T.M.

(2021) Nat Chem Biol 17: 1101-1110

Released	2021-08-18
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Synechocystis sp. PCC 6714 synthetic construct
Macromolecule	8x(Asp-Arg)-NH2 (protein) Cyanophycin synthase (protein)
Unique Ligands	ACP, MG