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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Grembecka, J."

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Search Summary

This query matches 68 Structures.

Refinements

Structure Determination Methodology

experimental (68)

Scientific Name of Source Organism

	Homo sapiens (57)
	Plasmodium falciparum 3D7 (4)
	synthetic construct (4)
	Mus musculus (2)
	Plasmodium falciparum FcB1/Columbia (2)
	Bacillus subtilis (1)
	Nematostella vectensis (1)
	Plasmodium falciparum (1)
	Rattus norvegicus (1)

Taxonomy

	Eukaryota (67)
	other sequences (4)
	Bacteria (1)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (62)
	SOLUTION NMR (6)

Polymer Entity Type

	Protein (68)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (32)
	2.0 - 2.5 (18)
	2.5 - 3.0 (5)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (12)
	2010 - 2014 (18)
	2015 - 2019 (25)
	2020 - 2024 (12)

Enzyme Classification Name

	Transferases (16)
	Hydrolases (9)
	Isomerases (2)
	Lyases (1)

Symmetry Type

	Asymmetric (60)
	Dihedral (4)
	Cyclic (5)

SCOP Classification

	Artifacts (23)
	All alpha proteins (27)
	Alpha and beta proteins (a+b) (27)
	All beta proteins (9)
	Alpha and beta proteins (a/b) (3)
	Small proteins (1)

AllSelected

1 to 25 of 68 Structures

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1KYH \| pdb_00001kyh	Download File View File

Structure of Bacillus subtilis YxkO, a Member of the UPF0031 Family and a Putative Kinase

Zhang, R., Dementieva, I., Vinokour, E., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2002) J Struct Biol 139: 161-170

Released	2002-08-14
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bacillus subtilis
Macromolecule	Hypothetical 29.9 kDa protein in SIGY-CYDD intergenic region (protein)

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1V1T \| pdb_00001v1t	Download File View File

Crystal structure of the PDZ tandem of human syntenin in complex with TNEYKV peptide

Grembecka, J., Cierpicki, T., Devedjiev, Y., Cooper, D.R., Derewenda, U., Derewenda, Z.S.

(2006) Biochemistry 45: 3674

Released	2005-06-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	SYNTENIN 1 (protein) TNEYKV PEPTIDE (protein)
Unique Ligands	BEZ

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1W9E \| pdb_00001w9e	Download File View File

Crystal structure of the PDZ tandem of human syntenin in complex with TNEFYF peptide

Grembecka, J., Cierpicki, T., Devedjiev, Y., Cooper, D.R., Derewenda, U., Derewenda, Z.S.

(2006) Biochemistry 45: 3674

Released	2006-03-22
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	SYNTENIN 1 (protein) TNEFYF PEPTIDE (protein)
Unique Ligands	BEZ

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1W9O \| pdb_00001w9o	Download File View File

Crystal structure of the PDZ tandem of human syntenin in complex with TNEYYV peptide

Grembecka, J., Cierpicki, T., Devedjiev, Y., Cooper, D.R., Derewenda, U., Derewenda, Z.S.

(2006) Biochemistry 45: 3674

Released	2006-03-22
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	SYNTENIN 1 (protein) TNEYYV PEPTIDE (protein)
Unique Ligands	BEZ

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1W9Q \| pdb_00001w9q	Download File View File

Crystal structure of the PDZ tandem of human syntenin in complex with TNEFAF peptide

Grembecka, J., Cierpicki, T., Devedjiev, Y., Cooper, D.R., Derewenda, Z.S.

(2006) Biochemistry 45: 3674

Released	2006-03-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	SYNTENIN 1 (protein) TNEFAF PEPTIDE (protein)
Unique Ligands	BEZ

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1YBO \| pdb_00001ybo	Download File View File

Crystal structure of the PDZ tandem of human syntenin with syndecan peptide

Grembecka, J., Cooper, D.R., Cierpicki, T., Kang, B.S., Devedjiev, Y., Derewenda, Z.

(2006) Biochemistry 45: 3674-3683

Released	2006-01-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Syndecan-4 (protein) Syntenin 1 (protein)

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2B8A \| pdb_00002b8a	Download File View File

High Resolution Structure of the HDGF PWWP Domain

Lukasik, S.M., Cierpicki, T., Borloz, M., Grembecka, J., Everett, A., Bushweller, J.H.

(2006) Protein Sci 15: 314-323

Released	2005-12-06
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	Hepatoma-derived growth factor (protein)

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2J6W \| pdb_00002j6w	Download File View File

R164N mutant of the RUNX1 Runt domain

Grembecka, J., Zhe, L., Lukasik, S.M., Liu, Y., Bielnicka, I., Bushweller, J.H., Speck, N.A.

(2006) J Mol Biology 364: 1073

Released	2007-10-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	RUNT-RELATED TRANSCRIPTION FACTOR 1 (protein)
Unique Ligands	CL

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2JYI \| pdb_00002jyi	Download File View File

Solution structure of MLL CXXC domain

Cierpicki, T., Bushweller, J.H.

To be published

Released	2008-12-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Zinc finger protein HRX (protein)
Unique Ligands	ZN

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2KKF \| pdb_00002kkf	Download File View File

Solution structure of MLL CXXC domain in complex with palindromic CPG DNA

Cierpicki, T., Riesbeck, J.E., Grembecka, J.E., Lukasik, S.M., Popovic, R., Omonkowska, M., Shultis, D.S., Zeleznik-Le, N.J., Bushweller, J.H.

(2010) Nat Struct Mol Biol 17: 62-68

Released	2009-12-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase HRX (protein) 5'-D(CPCPCPTPGPCPGPCPAPGPGPG)-3' (nucleic acid)
Unique Ligands	ZN

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2MTN \| pdb_00002mtn	Download File View File

Solution structure of MLL-IBD complex

Cierpicki, T., Pollock, J., Murai, M.

(2014) Blood 124: 3730-3737

Released	2014-12-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase 2A, PC4 and SFRS1-interacting protein fusion (protein)

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2NA1 \| pdb_00002na1	Download File View File

ULD complex

Cierpicki, T., Gray, F., Cho, H.

(2016) Nat Commun 7: 13343-13343

Released	2016-11-16
Method	SOLUTION NMR
Organisms	Homo sapiens Mus musculus
Macromolecule	Polycomb complex protein BMI-1, Polyhomeotic-like 2 (protein)

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3EBG \| pdb_00003ebg	Download File View File

Structure of the M1 Alanylaminopeptidase from malaria

McGowan, S., Porter, C.J., Buckle, A.M., Whisstock, J.C.

(2009) Proc Natl Acad Sci U S A 106: 2537-2542

Released	2009-01-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Plasmodium falciparum FcB1/Columbia
Macromolecule	M1 family aminopeptidase (protein)
Unique Ligands	GOL, MG, ZN

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3EBH \| pdb_00003ebh	Download File View File

Structure of the M1 Alanylaminopeptidase from malaria complexed with bestatin

McGowan, S., Porter, C.J., Buckle, A.M., Whisstock, J.C.

(2009) Proc Natl Acad Sci U S A 106: 2537-2542

Released	2009-01-27
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Plasmodium falciparum
Macromolecule	M1 family aminopeptidase (protein)
Unique Ligands	BES, GOL, MG, ZN

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3EBI \| pdb_00003ebi	Download File View File

Structure of the M1 Alanylaminopeptidase from malaria complexed with the phosphinate dipeptide analog

McGowan, S., Porter, C.J., Buckle, A.M., Whisstock, J.C.

(2009) Proc Natl Acad Sci U S A 106: 2537-2542

Released	2009-01-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Plasmodium falciparum FcB1/Columbia
Macromolecule	M1 family aminopeptidase (protein)
Unique Ligands	BEY, GOL, MG, ZN

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3KQX \| pdb_00003kqx	Download File View File

Structure of a protease 1

McGowan, S., Whisstock, J.C.

(2010) Proc Natl Acad Sci U S A 107: 2449-2454

Released	2010-02-02
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	M17 leucyl aminopeptidase (protein)
Unique Ligands	1PE, 2PE, CO3, SO4, ZN

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3KQZ \| pdb_00003kqz	Download File View File

Structure of a protease 2

McGowan, S., Whisstock, J.C.

(2010) Proc Natl Acad Sci U S A 107: 2449-2454

Released	2010-02-02
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	M17 leucyl aminopeptidase (protein)
Unique Ligands	1PE, 2PE, CO3, SO4, ZN

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3KR4 \| pdb_00003kr4	Download File View File

Structure of a protease 3

McGowan, S., Whisstock, J.C.

(2010) Proc Natl Acad Sci U S A 107: 2449-2454

Released	2010-02-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	M17 leucyl aminopeptidase (protein)
Unique Ligands	1PE, BES, CO3, MG, SO4, ZN

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3KR5 \| pdb_00003kr5	Download File View File

Structure of a protease 4

McGowan, S., Whisstock, J.C.

(2010) Proc Natl Acad Sci U S A 107: 2449-2454

Released	2010-02-02
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	M17 leucyl aminopeptidase (protein)
Unique Ligands	1PE, BEY, CO3, SO4, ZN

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3RE2 \| pdb_00003re2	Download File View File

Crystal structure of menin reveals the binding site for Mixed Lineage Leukemia (MLL) protein

Murai, M.J., Chruszcz, M., Reddy, G., Grembecka, J., Cierpicki, T.

(2011) J Biological Chem 286: 31742-31748

Released	2011-07-13
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Nematostella vectensis
Macromolecule	Predicted protein (protein)
Unique Ligands	GOL

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4GPQ \| pdb_00004gpq	Download File View File

Structural insights into inhibition of the bivalent menin-MLL interaction by small molecules in leukemia

Shi, A., Murai, M.J., He, S., Lund, G.L., Hartley, T., Purohit, T., Reddy, G., Chruszcz, M., Grembecka, J., Cierpicki, T.

(2012) Blood 120: 4461-4469

Released	2012-09-19
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Homo sapiens
Macromolecule	Menin (protein)
Unique Ligands	EPE, PEG, PG4

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4GQ3 \| pdb_00004gq3	Download File View File

Human menin with bound inhibitor MI-2

Shi, A., Murai, M.J., He, S., Lund, G.L., Hartley, T., Purohit, T., Reddy, G., Chruszcz, M., Grembecka, J., Cierpicki, T.

(2012) Blood 120: 4461-4469

Released	2012-09-19
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Homo sapiens
Macromolecule	Menin (protein)
Unique Ligands	0RO, PEG, SO4, UNX

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4GQ4 \| pdb_00004gq4	Download File View File

Human menin with bound inhibitor MI-2-2

Shi, A., Murai, M.J., He, S., Lund, G.L., Hartley, T., Purohit, T., Reddy, G., Chruszcz, M., Grembecka, J., Cierpicki, T.

(2012) Blood 120: 4461-4469

Released	2012-09-19
Method	X-RAY DIFFRACTION 1.27 Å
Organisms	Homo sapiens
Macromolecule	Menin (protein)
Unique Ligands	0RT, DMS, EPE, PE4, SO4, UNX

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4GQ6 \| pdb_00004gq6	Download File View File

Human menin in complex with MLL peptide

Shi, A., Murai, M.J., He, S., Lund, G.L., Hartley, T., Purohit, T., Reddy, G., Chruszcz, M., Grembecka, J., Cierpicki, T.

(2012) Blood 120: 4461-4469

Released	2012-09-19
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase MLL (protein) Menin (protein)
Unique Ligands	1PE, SO4