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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Grotzfeld, R.M."

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Search Summary

This query matches 62 Structures.

Refinements

Structure Determination Methodology

experimental (62)

Scientific Name of Source Organism

	Homo sapiens (61)
	Rattus norvegicus (1)

Taxonomy

Eukaryota (62)

Experimental Method

X-RAY DIFFRACTION (62)

Polymer Entity Type

Protein (62)

Refinement Resolution (Å)

	1.5 - 2.0 (19)
	2.0 - 2.5 (28)
	2.5 - 3.0 (14)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (36)
	2015 - 2019 (21)
	2020 - 2024 (1)

Enzyme Classification Name

	Hydrolases (33)
	Ligases (11)
	Transferases (11)
	Oxidoreductases (3)

Symmetry Type

	Asymmetric (59)
	Cyclic (4)

SCOP Classification

	All beta proteins (26)
	Alpha and beta proteins (a/b) (9)
	All alpha proteins (11)
	Artifacts (3)

AllSelected

1 to 25 of 62 Structures

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Explore in 3D

2RBE \| pdb_00002rbe	Download File View File

The discovery of 2-anilinothiazolones as 11beta-HSD1 inhibitors

Zhang, J., Jordan, S.R., Li, V.

(2007) Bioorg Med Chem Lett 17: 6056-6061

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Corticosteroid 11-beta-dehydrogenase isozyme 1 (protein)
Unique Ligands	NDP, ZMG

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3BYZ \| pdb_00003byz	Download File View File

2-Amino-1,3-thiazol-4(5H)-ones as Potent and Selective 11-Hydroxysteroid Dehydrogenase Type 1 Inhibitors

Zhang, J., Jordan, S.R., Li, V.

(2008) J Med Chem 51: 2933-2943

Released	2008-02-12
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Homo sapiens
Macromolecule	Corticosteroid 11-beta-dehydrogenase isozyme 1 (protein)
Unique Ligands	H11, NDP

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3EY4 \| pdb_00003ey4	Download File View File

Further studies with the 2-amino-1,3-thiazol-4(5H)-one class of 11-hydroxysteroid dehydrogenase type 1 (11-HSD1) inhibitors: Reducing pregnane X receptor (PXR) activity and exploring activity in a monkey pharmacodynamic model

Zhang, J.D., Jordan, S.R., Li, V.

(2008) To be published

Released	2008-11-11
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	11-beta-Hydroxysteroid Dehydrogenase 1 (protein)
Unique Ligands	352, NDP

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3JZK \| pdb_00003jzk	Download File View File

crystal structure of MDM2 with chromenotriazolopyrimidine 1

Huang, X.

(2009) J Med Chem 52: 7044-7053

Released	2009-11-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	YIN

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3RSV \| pdb_00003rsv	Download File View File

Structure of Bace-1 (Beta-Secretase) in complex with (R)-3-(2-amino-6-o-tolylquinolin-3-yl)-N-((R)-2,2-dimethyltetrahydro-2H-pyran-4-yl)-2-methylpropanamide

Sickmier, E.A.

(2011) J Med Chem 54: 5836-5857

Released	2011-08-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	3RS, GOL, IOD

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3RSX \| pdb_00003rsx	Download File View File

Structure of Bace-1 (Beta-Secretase) in Complex with 6-(Thiophen-3-yl)quinolin-2-amine

Sickmier, E.A.

(2011) J Med Chem 54: 5836-5857

Released	2011-08-31
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	IOD, RSV

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3RTH \| pdb_00003rth	Download File View File

Structure of Bace-1 (Beta-Secretase) in Complex with 6-(2-(3,3-Dimethylbut-1-ynyl)phenyl)quinolin-2-amine

Sickmier, E.A.

(2011) J Med Chem 54: 5836-5857

Released	2011-08-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	IOD, RTH

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3RTM \| pdb_00003rtm	Download File View File

Structure of Bace-1 (Beta-Secretase) in Complex with 3-(2-Aminoquinolin-3-yl)-N-cyclohexyl-N-methylpropanamide

Sickmier, E.A.

(2011) J Med Chem 54: 5836-5857

Released	2011-08-31
Method	X-RAY DIFFRACTION 2.76 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	GOL, IOD, RTM

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3RTN \| pdb_00003rtn	Download File View File

Structure of Bace-1 (Beta-Secretase) in Complex with 3-(2-Amino-6-o-tolylquinolin-3-yl)-N-cyclohexylpropanamide

Sickmier, E.A.

(2011) J Med Chem 54: 5836-5857

Released	2011-08-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	GOL, IOD, RTN

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3RU1 \| pdb_00003ru1	Download File View File

Structure of Bace-1 (Beta-Secretase) in Complex with 3-(2-Aminoquinolin-3-yl)-N-(cyclohexylmethyl)propanamide

Sickmier, E.A.

(2011) J Med Chem 54: 5836-5857

Released	2011-08-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	3RU, GOL, IOD

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3RVI \| pdb_00003rvi	Download File View File

Structure of Bace-1 (Beta-Secretase) in Complex with 2-((2-Amino-6-o-tolylquinolin-3-yl)methyl)-N-(cyclohexylmethyl)pentanamide

Sickmier, E.A.

(2011) J Med Chem 54: 5836-5857

Released	2011-08-31
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	GOL, IOD, RVI

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4DH6 \| pdb_00004dh6	Download File View File

Structure of Bace-1 (Beta-Secretase) in Complex with (2R)-N-((2S,3R)-1-(benzo[d][1,3]dioxol-5-yl)-3-hydroxy-4-((S)-6'-neopentyl-3',4'-dihydrospiro[cyclobutane-1,2'-pyrano[2,3-b]pyridine]-4'-ylamino)butan-2-yl)-2-methoxypropanamide

Sickmier, E.A.

(2012) J Med Chem 55: 9009-9024

Released	2012-04-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	0KN, GOL, IOD

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4DI2 \| pdb_00004di2	Download File View File

Crystal structure of BACE1 in complex with hydroxyethylamine inhibitor 37

Whittington, D.A., Long, A.M.

(2012) J Med Chem 55: 9025-9044

Released	2012-10-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	0K9, GOL

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4DUS \| pdb_00004dus	Download File View File

Structure of Bace-1 (Beta-Secretase) in complex with N-((2S,3R)-1-(4-fluorophenyl)-3-hydroxy-4-((6'-neopentyl-3',4'-dihydrospiro[cyclobutane-1,2'-pyrano[2,3-b]pyridin]-4'-yl)amino)butan-2-yl)acetamide

Sickmier, E.A.

(2012) ACS Med Chem Lett 3: 886-891

Released	2012-10-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	0MP, GOL, IOD

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4ERE \| pdb_00004ere	Download File View File

crystal structure of MDM2 (17-111) in complex with compound 23

Huang, X.

(2012) J Med Chem 55: 4936-4954

Released	2012-05-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	0R2, SO4

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4ERF \| pdb_00004erf	Download File View File

crystal structure of MDM2 (17-111) in complex with compound 29 (AM-8553)

Huang, X.

(2012) J Med Chem 55: 4936-4954

Released	2012-05-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	0R3

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4FS4 \| pdb_00004fs4	Download File View File

Structure of BACE Bound to (S)-4-(3'-methoxy-[1,1'-biphenyl]-3-yl)-1,4-dimethyl-6-oxotetrahydropyrimidin-2(1H)-iminium

Strickland, C., Stamford, A.

(2012) ACS Med Chem Lett 3: 886-891

Released	2012-10-10
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	H24, TLA

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4JV7 \| pdb_00004jv7	Download File View File

Co-crystal structure of MDM2 with inhibitor (2S,5R,6S)-2-benzyl-5,6-bis(4-bromophenyl)-4-methylmorpholin-3-one

Huang, X., Gonzalez-Lopez de Turiso, F., Sun, D., Yosup, R., Bartberger, M.D., Beck, H.P., Cannon, J., Shaffer, P., Oliner, J.D., Olson, S.H., Medina, J.C.

(2013) J Med Chem 56: 4053-4070

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	1MN, SO4

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4JV9 \| pdb_00004jv9	Download File View File

Co-crystal structure of MDM2 with inhibitor (2S,5R,6S)-2-benzyl-5,6-bis(4-chlorophenyl)-4-methylmorpholin-3-one

Huang, X., Gonzalez-Lopez de Turiso, F., Sun, D., Yosup, R., Bartberger, M.D., Beck, H.P., Cannon, J., Shaffer, P., Oliner, J.D., Olson, S.H., Medina, J.C.

(2013) J Med Chem 56: 4053-4070

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	1MO, SO4

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4JVE \| pdb_00004jve	Download File View File

Co-crystal structure of MDM2 with inhibitor (2R,3E)-2-[(2S,3R,6S)-2,3-bis(4-chlorophenyl)-6-(4-fluorobenzyl)-5-oxomorpholin-4-yl]pent-3-enoic acid

Huang, X., Gonzalez-Lopez de Turiso, F., Sun, D., Yosup, R., Bartberger, M.D., Beck, H.P., Cannon, J., Shaffer, P., Oliner, J.D., Olson, S.H., Medina, J.C.

(2013) J Med Chem 56: 4053-4070

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	1MQ

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4JVR \| pdb_00004jvr	Download File View File

Co-crystal structure of MDM2 with inhibitor (2'S,3R,4'S,5'R)-N-(2-aminoethyl)-6-chloro-4'-(3-chloro-2-fluorophenyl)-2'-(2,2-dimethylpropyl)-2-oxo-1,2-dihydrospiro[indole-3,3'-pyrrolidine]-5'-carboxamide

Huang, X., Gonzalez-Lopez de Turiso, F., Sun, D., Yosup, R., Bartberger, M.D., Beck, H.P., Cannon, J., Shaffer, P., Oliner, J.D., Olson, S.H., Medina, J.C.

(2013) J Med Chem 56: 4053-4070

Released	2013-05-01
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	1MT

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4JWR \| pdb_00004jwr	Download File View File

Co-crystal structure of MDM2 with inhibitor {(2S,5R,6S)-6-(3-chlorophenyl)-5-(4-chlorophenyl)-4-[(2S)-1-hydroxybutan-2-yl]-3-oxomorpholin-2-yl}acetic acid

Shaffer, P.L.

(2013) J Med Chem 56: 4053-4070

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	1MY

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4K8S \| pdb_00004k8s	Download File View File

Hydroxyethylamine-based inhibitors of BACE1: P1-P3 macrocyclization can improve potency, selectivity, and cell activity

Jordan, S.R.

(2013) Bioorg Med Chem Lett 23: 4459-4464

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	1QT

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4K9H \| pdb_00004k9h	Download File View File

Bace-1 inhibitor complex

Jordan, S.R.

(2013) Bioorg Med Chem Lett 23: 4459-4464

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	1QU

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4KE0 \| pdb_00004ke0	Download File View File

Crystal structure of BACE1 in complex with hydroxyethylamine-macrocyclic inhibitor 13

Whittington, D.A., Long, A.M., Li, V.

(2013) Bioorg Med Chem Lett 23: 4459-4464

Released	2013-07-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	1R8, GOL, SO4

1 to 25 of 62 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2RBE | pdb_00002rbe

3BYZ | pdb_00003byz

3EY4 | pdb_00003ey4

3JZK | pdb_00003jzk

3RSV | pdb_00003rsv

3RSX | pdb_00003rsx

3RTH | pdb_00003rth

3RTM | pdb_00003rtm

3RTN | pdb_00003rtn

3RU1 | pdb_00003ru1

3RVI | pdb_00003rvi

4DH6 | pdb_00004dh6

4DI2 | pdb_00004di2

4DUS | pdb_00004dus

4ERE | pdb_00004ere

4ERF | pdb_00004erf

4FS4 | pdb_00004fs4

4JV7 | pdb_00004jv7

4JV9 | pdb_00004jv9

4JVE | pdb_00004jve

4JVR | pdb_00004jvr

4JWR | pdb_00004jwr

4K8S | pdb_00004k8s

4K9H | pdb_00004k9h

4KE0 | pdb_00004ke0