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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Hang, J."

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Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

	Homo sapiens (12)
	synthetic construct (4)
	Escherichia coli BL21(DE3) (2)
	Escherichia coli DH5[alpha] (2)
	Saccharomyces cerevisiae (2)
	Feline infectious peritonitis virus (1)
	Japanese encephalitis virus (1)
	Klebsiella pneumoniae JM45 (1)
	Mesocricetus auratus (1)
	Mus musculus (1)

More...

Taxonomy

	Eukaryota (15)
	Bacteria (4)
	other sequences (4)
	Riboviria (2)

Experimental Method

	X-RAY DIFFRACTION (14)
	ELECTRON MICROSCOPY (8)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (24)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (3)
	2.0 - 2.5 (7)
	2.5 - 3.0 (4)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)
	> 4.5 (2)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (1)
	2015 - 2019 (11)
	2020 - 2024 (9)
	2025 - 2029 (2)

Enzyme Classification Name

	Transferases (12)
	Ligases (5)
	Hydrolases (1)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (18)
	Cyclic (4)
	Dihedral (1)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (9)
	Artifacts (5)
	All beta proteins (1)

AllSelected

1 to 24 of 24 Structures

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1PJW \| pdb_00001pjw	Download File View File

Solution Structure of the Domain III of the Japan Encephalitis Virus Envelope Protein

Wu, K.P., Wu, C.W., Tsao, Y.P., Lou, Y.C., Lin, C.W.

(2003) J Biological Chem 278: 46007-46013

Released	2003-11-25
Method	SOLUTION NMR
Organisms	Japanese encephalitis virus
Macromolecule	envelope protein (protein)

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1XHH \| pdb_00001xhh	Download File View File

Solution Structure of porcine beta-microseminoprotein

Wang, I., Lou, Y.C., Wu, K.P., Wu, S.H., Chang, W.C., Chen, C.

(2005) J Mol Biology 346: 1071-1082

Released	2005-03-20
Method	SOLUTION NMR
Organisms	Sus scrofa
Macromolecule	beta-microseminoprotein (protein)

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5C7J \| pdb_00005c7j	Download File View File

CRYSTAL STRUCTURE OF NEDD4 WITH A UB VARIANT

Walker, J.R., Hu, J., Dong, A., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Tong, Y., Structural Genomics Consortium (SGC)

(2016) Mol Cell 62: 121-136

Released	2016-03-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase NEDD4 (protein) Polyubiquitin-C (protein)

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5C7M \| pdb_00005c7m	Download File View File

CRYSTAL STRUCTURE OF E3 LIGASE ITCH WITH A UB VARIANT

Walker, J.R., Hu, J., Dong, A., Wernimont, A., Zhang, W., Sidhu, S., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Tong, Y., Structural Genomics Consortium (SGC)

(2016) Mol Cell 62: 121-136

Released	2016-03-16
Method	X-RAY DIFFRACTION 3.03 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Itchy homolog (protein) Polyubiquitin-C (protein)

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5HPK \| pdb_00005hpk	Download File View File

System-wide modulation of HECT E3 ligases with selective ubiquitin variant probes: NEDD4L and UbV NL.1

Wu, K.-P., Mukherjee, M., Mercredi, P.Y., Schulman, B.A.

(2016) Mol Cell 62: 121-136

Released	2016-03-16
Method	X-RAY DIFFRACTION 2.431 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase NEDD4-like (protein) Ubiquitin variant NL.1 (protein)

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5HPL \| pdb_00005hpl	Download File View File

System-wide modulation of HECT E3 ligases with selective ubiquitin variant probes: Rsp5 and UbV R5.4

Wu, K.-P., Kamadurai, H.B., Schulman, B.A.

(2016) Mol Cell 62: 121-136

Released	2016-03-16
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	Rsp5 (protein) Ubiquitin variant R5.4 (protein)

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5HPS \| pdb_00005hps	Download File View File

System-wide modulation of HECT E3 ligases with selective ubiquitin variant probes: WWP1 and UbV P1.1

Wu, K.-P., Mercredi, P.Y., Schulman, B.A.

(2016) Mol Cell 62: 121-136

Released	2016-03-16
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin variant P1.1 (protein) WWP1 HECT (protein)

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5HPT \| pdb_00005hpt	Download File View File

System-wide modulation of HECT E3 ligases with selective ubiquitin variant probes: WWP1, Ubv P2.3 and UBCH7

Wu, K.-P., Schulman, B.A.

(2016) Mol Cell 62: 121-136

Released	2016-03-16
Method	X-RAY DIFFRACTION 2.84 Å
Organisms	Homo sapiens
Macromolecule	NEDD4-like E3 ubiquitin-protein ligase WWP1 (protein) Ubiquitin variant P2.3 (protein) Ubiquitin-conjugating enzyme E2 L3 (protein)

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5IFR \| pdb_00005ifr	Download File View File

Structure of the stable UBE2D3-UbDha conjugate

Pruneda, J.N., Mulder, M.P.C., Witting, K., Ovaa, H., Komander, D.

(2016) Nat Chem Biol 12: 523-530

Released	2016-05-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Polyubiquitin-B (protein) Ubiquitin-conjugating enzyme E2 D3 (protein)
Unique Ligands	GOL

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5JG6 \| pdb_00005jg6	Download File View File

APC11-Ubv shows role of noncovalent RING-Ubiquitin interactions in processive multiubiquitination and Ubiquitin chain elongation by APC/C

Brown, N.G., Zhang, W., Yu, S., Miller, D.J., Sidhu, S.S., Schulman, B.A.

(2016) Cell 165: 1440-1453

Released	2016-06-15
Method	X-RAY DIFFRACTION 2.0013 Å
Organisms	Homo sapiens
Macromolecule	Anaphase-promoting complex subunit 11 (protein) Polyubiquitin-B (protein)
Unique Ligands	ZN

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5L9T \| pdb_00005l9t	Download File View File

Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with E2 UBE2S poised for polyubiquitination where UBE2S, APC2, and APC11 are modeled into low resolution density

Brown, N.G., VanderLinden, R., Dube, P., Haselbach, D., Peters, J.M., Stark, H., Schulman, B.A.

(2016) Cell 165: 1440-1453

Released	2016-10-26
Method	ELECTRON MICROSCOPY 6.4 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 17

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5L9U \| pdb_00005l9u	Download File View File

Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with a cross linked Ubiquitin variant-substrate-UBE2C (UBCH10) complex representing key features of multiubiquitination

Brown, N.G., VanderLinden, R., Dube, P., Haselbach, D., Peters, J.M., Stark, H., Schulman, B.A.

(2016) Cell 165: 1440-1453

Released	2016-09-14
Method	ELECTRON MICROSCOPY 6.4 Å
Organisms	Homo sapiens Rattus norvegicus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 17

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5V4K \| pdb_00005v4k	Download File View File

Crystal structure of NEDD4 LIR-fused human LC3B_2-119

Qiu, Y., Zheng, Y., Schulman, B.

(2017) Protein Sci 26: 1674-1680

Released	2017-05-17
Method	X-RAY DIFFRACTION 2.099 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B,Microtubule-associated proteins 1A/1B light chain 3B,Microtubule-associated proteins 1A/1B light chain 3B (protein)
Unique Ligands	GOL, SO4

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6JX7 \| pdb_00006jx7	Download File View File

Cryo-EM structure of spike protein of feline infectious peritonitis virus strain UU4

Hsu, S.T.D., Yang, T.J., Ko, T.P., Draczkowski, P.

(2020) Proc Natl Acad Sci U S A 117: 1438-1446

Released	2020-01-15
Method	ELECTRON MICROSCOPY 3.31 Å
Organisms	Feline infectious peritonitis virus
Macromolecule	Feline Infectious Peritonitis Virus Spike Protein (protein)
Unique Ligands	MAN, NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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7VPW \| pdb_00007vpw	Download File View File

Crystal structure of Transportin-1 in complex with BAP1 PY-NLS (residues 706-724)

Yang, T.J., Hsu, S.T.D.

(2022) J Cell Biol 221:

Released	2022-04-20
Method	X-RAY DIFFRACTION 3.76 Å
Organisms	Homo sapiens
Macromolecule	BRCA1-associated protein 1 (BAP1) (protein) Transportin-1 (protein)

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7W85 \| pdb_00007w85	Download File View File

Structural of the filamentous Escherichia coli glutamine synthetase

Huang, P.-C., Chen, S.-K., Wu, K.-P.

(2022) Protein Sci 31: e4304-e4304

Released	2022-04-06
Method	ELECTRON MICROSCOPY 2.94 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	Glutamine synthetase (protein)
Unique Ligands	NI

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7YAT \| pdb_00007yat	Download File View File

CryoEM tetra protofilament structure of the hamster prion 108-144 fibril

Chen, E.H.-L., Kao, S.-W., Lee, C.-H., Huang, J.Y.C., Chen, R.P.-Y., Wu, K.-P.

(2022) J Am Chem Soc 144: 13888-13894

Released	2022-07-27
Method	ELECTRON MICROSCOPY 2.2 Å
Organisms	Mesocricetus auratus
Macromolecule	Major prion protein (protein)

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7YQM \| pdb_00007yqm	Download File View File

2.9-angstrom cryo-EM structure of Ecoli malate synthase G

Wu, K.-P., Wu, Y.-M., Lu, Y.-C.

(2023) J Struct Biol 215: 107958-107958

Released	2023-03-29
Method	ELECTRON MICROSCOPY 2.89 Å
Organisms	Escherichia coli DH5[alpha]
Macromolecule	Malate synthase G (protein)

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7YQN \| pdb_00007yqn	Download File View File

Crystal structure of Ecoli malate synthase G

Wu, K.-P., Lu, Y.-C., Ko, T.-P.

(2023) J Struct Biol 215: 107958-107958

Released	2023-03-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli DH5[alpha]
Macromolecule	Malate synthase G (protein)
Unique Ligands	BME, CL, GOL, NA

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8J0A \| pdb_00008j0a	Download File View File

Robust design of effective allosteric activator UbV R4 for Rsp5 E3 ligase using the machine-learning tool ProteinMPNN

Lin, Y.-F., Hsieh, Y.-J., Kao, H.-W., Ko, T.-P., Wu, K.-P.

(2023) ACS Synth Biol 12: 2310-2319

Released	2023-08-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	synthetic construct
Macromolecule	Ubiquitin variant R4 (protein)
Unique Ligands	SO4

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8JO2 \| pdb_00008jo2	Download File View File

Structural basis of transcriptional activation by the OmpR/PhoB-family response regulator PmrA

Lou, Y.-C., Huang, H.-Y., Chen, C., Wu, K.-P.

(2023) Nucleic Acids Res 51: 10049-10058

Released	2023-08-30
Method	ELECTRON MICROSCOPY 2.74 Å
Organisms	Escherichia coli BL21(DE3) Klebsiella pneumoniae JM45 synthetic construct
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2