RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Jordan, S.R."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 42 Structures.

Refinements

Structure Determination Methodology

experimental (42)

Scientific Name of Source Organism

	Opitutus terrae PB90-1 (8)
	Panus similis (6)
	Caldicellulosiruptor acetigenus I77R1B (5)
	Thermobacillus xylanilyticus (5)
	Aspergillus fumigatus Af293 (3)
	Lactobacillus acidophilus NCFM (2)
	Lactococcus phage TP901-1 (2)
	Opitutus terrae (2)
	Zoarces viviparus (2)
	Candidatus Solibacter usitatus (1)

More...

Taxonomy

	Bacteria (28)
	Eukaryota (11)
	Duplodnaviria (2)
	Archaea (1)

Experimental Method

X-RAY DIFFRACTION (42)

Polymer Entity Type

	Protein (42)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (8)
	1.5 - 2.0 (17)
	2.0 - 2.5 (9)
	2.5 - 3.0 (7)
	3.0 - 3.5 (1)

Release Date

	2010 - 2014 (6)
	2015 - 2019 (24)
	2020 - 2024 (12)

Enzyme Classification Name

	Hydrolases (19)
	Oxidoreductases (5)
	Lyases (2)

Symmetry Type

	Asymmetric (35)
	Cyclic (3)
	Dihedral (4)

SCOP Classification

	All beta proteins (7)
	Artifacts (2)
	Alpha and beta proteins (a+b) (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 42 Structures

Page 1 of 2

Sort by

Explore in 3D

3ZFK \| pdb_00003zfk	Download File View File

N-terminal truncated Nuclease Domain of Colicin E7

Toth, E., Czene, A., Gyurcsik, B., Otten, H., Poulsen, J.-C.N., Larsen, S., Christensen, H.E.M., Nagata, K.

(2014) Metallomics 6: 2090

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	COLICIN-E7 (protein)
Unique Ligands	ACT, CL, SO4, ZN

Explore in 3D

3ZHI \| pdb_00003zhi	Download File View File

N-terminal domain of the CI repressor from bacteriophage TP901-1

Frandsen, K.H., Rasmussen, K.K., Poulsen, J.N., Lo Leggio, L.

(2013) Biochemistry 52: 6892

Released	2013-12-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Lactococcus phage TP901-1
Macromolecule	CI (protein)

Explore in 3D

3ZHM \| pdb_00003zhm	Download File View File

N-terminal domain of the CI repressor from bacteriophage TP901-1 in complex with the OL2 operator half-site

Frandsen, K.H., Rasmussen, K.K., Poulsen, J.N., Lo Leggio, L.

(2013) Biochemistry 52: 6892

Released	2013-12-25
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Lactococcus phage TP901-1
Macromolecule	CI (protein) 5'-D(APCPGPTPGPAPAPCPTPTPGPCPAPCP TPTPGPA)-3' (nucleic acid) 5'-D(APGPTPTPCPAPCPGPTPTPCPAPAPGP TPGPCPA)-3' (nucleic acid)

Explore in 3D

4AIE \| pdb_00004aie	Download File View File

Structure of glucan-1,6-alpha-glucosidase from Lactobacillus acidophilus NCFM

Fredslund, F., Navarro Poulsen, J.C., Lo Leggio, L.

(2012) J Bacteriol 194: 4249

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Lactobacillus acidophilus NCFM
Macromolecule	GLUCAN 1,6-ALPHA-GLUCOSIDASE (protein)
Unique Ligands	CA, GOL, MES

Explore in 3D

4UR4 \| pdb_00004ur4	Download File View File

Structure of the type III fish antifreeze protein from Zoarces viviparus ZvAFP13

Wilkens, C., Poulsen, J.-C.N., Ramloev, H., Lo Leggio, L.

(2014) Cryobiology 69: 163

Released	2014-07-23
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Zoarces viviparus
Macromolecule	ANTIFREEZE PROTEIN 13 (protein)

Explore in 3D

4UR6 \| pdb_00004ur6	Download File View File

Structure of the type III fish antifreeze protein from Zoarces viviparus ZvAFP6

Wilkens, C., Poulsen, J.-C.N., Ramloev, H., Lo Leggio, L.

(2014) Cryobiology 69: 163

Released	2014-07-23
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Zoarces viviparus
Macromolecule	TYPE III ANTIFREEZE PROTEIN 6 (protein)
Unique Ligands	SO4

Explore in 3D

5N04 \| pdb_00005n04	Download File View File

X-ray crystal structure of an LPMO

Frandsen, K.E.H., Poulsen, J.-C.N., Lo Leggio, L.

(2017) Carbohydr Res 448: 187-190

Released	2017-03-29
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Panus similis
Macromolecule	Auxiliary activity 9 (protein)
Unique Ligands	CL, CU, NA, NAG

Explore in 3D

5N05 \| pdb_00005n05	Download File View File

X-ray crystal structure of an LPMO

Frandsen, K.E.H., Poulsen, J.-C.N., Lo Leggio, L.

(2017) Carbohydr Res 448: 187-190

Released	2017-03-29
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Panus similis
Macromolecule	Auxiliary activity 9 (protein)
Unique Ligands	CL, CU, NAG
Unique branched monosaccharides	BGC

Explore in 3D

6EKI \| pdb_00006eki	Download File View File

Structure of a hyperthermostable carbonic anhydrase identified from an active hydrothermal vent chimney

Fredslund, F., Poulsen, J.-C.N., Lo Leggio, L.

(2018) Enzyme Microb Technol 114: 48-54

Released	2018-04-11
Method	X-RAY DIFFRACTION 2.555 Å
Organisms	Persephonella marina
Macromolecule	Carbonic anhydrase (protein)
Unique Ligands	ZN

Explore in 3D

6F2P \| pdb_00006f2p	Download File View File

Structure of Paenibacillus xanthan lyase to 2.6 A resolution

Lo Leggio, L., Kadziola, A.

(2019) Cell Chem Biol 26: 191-202.e6

Released	2018-12-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Paenibacillus
Macromolecule	Paenibacillus xanthan lyase (protein)
Unique Ligands	BTB, CA, CL, MPD, MRD

Explore in 3D

6GRW \| pdb_00006grw	Download File View File

Glucuronoyl Esterase from Opitutus terrae (Au derivative)

Lo Leggio, L., Larsbrink, J., Meland Knudsen, R., Mazurkewich, S., Navarro Poulsen, J.C.

(2018) Biotechnol Biofuels 11: 213-213

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Opitutus terrae PB90-1
Macromolecule	Putative acetyl xylan esterase (protein)
Unique Ligands	AU, CA, EDO, MG, MPD

Explore in 3D

6GRY \| pdb_00006gry	Download File View File

Glucuronoyl Esterase from Solibacter usitatus.

Lo Leggio, L., Larsbrink, J., Meland Knudsen, R., Mazurkewich, S., Navarro Poulsen, J.C.

(2018) Biotechnol Biofuels 11: 213-213

Released	2018-08-15
Method	X-RAY DIFFRACTION 2.00033771874 Å
Organisms	Candidatus Solibacter usitatus
Macromolecule	Putative acetyl xylan esterase (protein)
Unique Ligands	EDO, PEG, PG4, PGE

Explore in 3D

6GS0 \| pdb_00006gs0	Download File View File

Native Glucuronoyl Esterase from Opitutus terrae

Lo Leggio, L., Larsbrink, J., Meland Knudsen, R., Mazurkewich, S., Navarro Poulsen, J.C.

(2018) Biotechnol Biofuels 11: 213-213

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Opitutus terrae PB90-1
Macromolecule	Putative acetyl xylan esterase (protein)
Unique Ligands	EDO, MG, PGE, SO4

Explore in 3D

6GU8 \| pdb_00006gu8	Download File View File

Glucuronoyl Esterase from Solibacter usitatus

Lo Leggio, L., Larsbrink, J., Meland Knudsen, R., Mazurkewich, S., Navarro Poulsen, J.C.

(2018) Biotechnol Biofuels 11: 213-213

Released	2018-08-15
Method	X-RAY DIFFRACTION 2.01807823457 Å
Organisms	Candidatus Solibacter usitatus Ellin6076
Macromolecule	Putative acetyl xylan esterase (protein)
Unique Ligands	EDO, PEG

Explore in 3D

6H1Z \| pdb_00006h1z	Download File View File

AFGH61B WILD-TYPE

Lo Leggio, L., Poulsen, J.C.N.

(2018) Carbohydr Res 469: 55-59

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Aspergillus fumigatus Af293
Macromolecule	Endoglucanase, putative (protein)
Unique Ligands	ACT, CU, NA

Explore in 3D

6HA5 \| pdb_00006ha5	Download File View File

AFGH61B L90V/D131S/M134L/A141W VARIANT

Lo Leggio, L., Poulsen, J.C.N.

(2018) Carbohydr Res 469: 55-59

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Aspergillus fumigatus Af293
Macromolecule	Endoglucanase, putative (protein)
Unique Ligands	ACT, CU

Explore in 3D

6HAQ \| pdb_00006haq	Download File View File

AFGH61B WILD-TYPE COPPER LOADED

Lo Leggio, L., Poulsen, J.C.N., Weihe, C.D.

(2018) Carbohydr Res 469: 55-59

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Aspergillus fumigatus Af293
Macromolecule	Endoglucanase, putative (protein)
Unique Ligands	ACT, CU, NAG

Explore in 3D

6HSW \| pdb_00006hsw	Download File View File

A CE15 glucuronoyl esterase from Teredinibacter turnerae T7901

Mazurkewich, S., Lo Leggio, L., Navarro Poulsen, J.C., Larsbrink, J.

(2019) J Biological Chem 294: 6635-6644

Released	2019-03-20
Method	X-RAY DIFFRACTION 2.14734381231 Å
Organisms	Teredinibacter turnerae T7901
Macromolecule	Carbohydrate esterase family 15 domain protein (protein)
Unique Ligands	1PE, BR, EDO, GOL, PEG

Explore in 3D

6RS6 \| pdb_00006rs6	Download File View File

X-ray crystal structure of LsAA9B

Frandsen, K.E.H., Tovborg, M., Poulsen, J.C.N., Johansen, K.S., Lo Leggio, L.

(2019) J Biological Chem 294: 17117-17130

Released	2019-09-11
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Panus similis
Macromolecule	AA9 (protein)
Unique Ligands	CL, GLY, MAN, PEG, SER
Unique branched monosaccharides	BMA, NAG

Explore in 3D

6RS7 \| pdb_00006rs7	Download File View File

X-ray crystal structure of LsAA9B (deglycosylated form)

Frandsen, K.E.H., Tovborg, M., Poulsen, J.C.N., Johansen, K.S., Lo Leggio, L.

(2019) J Biological Chem 294: 17117-17130

Released	2019-09-11
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Panus similis
Macromolecule	AA9 (protein)
Unique Ligands	MAN, MPD, NO3, PGE, SO4
Unique branched monosaccharides	NAG

Explore in 3D

6RS8 \| pdb_00006rs8	Download File View File

X-ray crystal structure of LsAA9B (transition metals soak)

Frandsen, K.E.H., Tovborg, M., Poulsen, J.C.N., Johansen, K.S., Lo Leggio, L.

(2019) J Biological Chem 294: 17117-17130

Released	2019-09-11
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Panus similis
Macromolecule	AA9 (protein)
Unique Ligands	ACT, MAN, MES, MPD
Unique branched monosaccharides	NAG

Explore in 3D

6RS9 \| pdb_00006rs9	Download File View File

X-ray crystal structure of LsAA9B (xylotetraose soak)

Frandsen, K.E.H., Tovborg, M., Poulsen, J.C.N., Johansen, K.S., Lo Leggio, L.

(2019) J Biological Chem 294: 17117-17130

Released	2019-09-11
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Panus similis
Macromolecule	AA9 (protein)
Unique Ligands	BCN, MAN
Unique branched monosaccharides	NAG, XYP

Explore in 3D

6SYR \| pdb_00006syr	Download File View File

The wild type glucuronoyl esterase OtCE15A from Opitutus terrae in complex with D-glucuronate

Mazurkewich, S., Navarro Poulsen, J.C., Larsbrink, J., Lo Leggio, L.

(2019) J Biological Chem 294: 19978-19987

Released	2019-11-27
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Opitutus terrae PB90-1
Macromolecule	glucuronoyl esterase OtCE15A (protein)
Unique Ligands	EDO, GCU, MG, NA

Explore in 3D

6SYU \| pdb_00006syu	Download File View File

The wild type glucuronoyl esterase OtCE15A from Opitutus terrae in complex with xylobiose

Mazurkewich, S., Navarro Poulsen, J.C., Larsbrink, J., Lo Leggio, L.

(2019) J Biological Chem 294: 19978-19987

Released	2019-11-27
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Opitutus terrae
Macromolecule	glucuronoyl esterase OtCE15A (protein)
Unique Ligands	EDO, MG, PG4
Unique branched monosaccharides	XYP

Explore in 3D

6SYV \| pdb_00006syv	Download File View File

The glucuronoyl esterase OtCE15A S267A variant from Opitutus terrae in complex with D-glucuronate

Mazurkewich, S., Navarro Poulsen, J.C., Larsbrink, J., Lo Leggio, L.

(2019) J Biological Chem 294: 19978-19987

Released	2019-11-27
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Opitutus terrae PB90-1
Macromolecule	glucuronoyl esterase OtCE15A (protein)
Unique Ligands	BDP, EDO, GCU, MG, PEG

1 to 25 of 42 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3ZFK | pdb_00003zfk

3ZHI | pdb_00003zhi

3ZHM | pdb_00003zhm

4AIE | pdb_00004aie

4UR4 | pdb_00004ur4

4UR6 | pdb_00004ur6

5N04 | pdb_00005n04

5N05 | pdb_00005n05

6EKI | pdb_00006eki

6F2P | pdb_00006f2p

6GRW | pdb_00006grw

6GRY | pdb_00006gry

6GS0 | pdb_00006gs0

6GU8 | pdb_00006gu8

6H1Z | pdb_00006h1z

6HA5 | pdb_00006ha5

6HAQ | pdb_00006haq

6HSW | pdb_00006hsw

6RS6 | pdb_00006rs6

6RS7 | pdb_00006rs7

6RS8 | pdb_00006rs8

6RS9 | pdb_00006rs9

6SYR | pdb_00006syr

6SYU | pdb_00006syu

6SYV | pdb_00006syv