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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Meng, X."

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Search Summary

This query matches 134 Structures.

Refinements

Structure Determination Methodology

experimental (134)

Scientific Name of Source Organism

	Homo sapiens (60)
	synthetic construct (25)
	Severe acute respiratory syndrome coronavirus 2 (15)
	Mus musculus (14)
	Vaccinia virus (9)
	Bos taurus (8)
	Rattus norvegicus (5)
	Saccharomyces cerevisiae S288C (5)
	Vaccinia virus WR (5)
	Human immunodeficiency virus 1 (4)

More...

Taxonomy

	Eukaryota (81)
	other sequences (25)
	Varidnaviria (23)
	Riboviria (20)
	Bacteria (17)
	Duplodnaviria (3)
	Monodnaviria (2)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (84)
	ELECTRON MICROSCOPY (39)
	SOLUTION NMR (11)

Polymer Entity Type

	Protein (134)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (35)
	2.0 - 2.5 (27)
	2.5 - 3.0 (24)
	3.0 - 3.5 (12)
	3.5 - 4.0 (11)
	4.0 - 4.5 (4)
	> 4.5 (5)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (18)
	2015 - 2019 (32)
	2020 - 2024 (82)

Enzyme Classification Name

	Hydrolases (40)
	Transferases (17)
	Oxidoreductases (1)
	Lyases (2)
	Isomerases (1)
	Ligases (1)

Membrane Protein Annotation

	PDBTM (19)
	OPM (15)
	mpstruc (16)
	MemProtMD (7)

Symmetry Type

	Asymmetric (89)
	Cyclic (50)
	Helical (1)

SCOP Classification

	All beta proteins (23)
	Alpha and beta proteins (a+b) (6)
	Artifacts (7)
	Alpha and beta proteins (a/b) (2)
	All alpha proteins (3)

AllSelected

1 to 25 of 134 Structures

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2KOD \| pdb_00002kod	Download File View File

A high-resolution NMR structure of the dimeric C-terminal domain of HIV-1 CA

Byeon, I.-J.L., Jung, J., Ahn, J., concel, J., Gronenborn, A.M.

(2009) Cell 139: 780-790

Released	2009-11-24
Method	SOLUTION NMR
Organisms	HIV-1 M:B_HXB2R
Macromolecule	HIV-1 CA C-terminal domain (protein)

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3F62 \| pdb_00003f62	Download File View File

Crystal Structure of Human IL-18 in complex with Ectromelia virus IL-18 Binding Protein

Krumm, B.E., Li, Y., Deng, J.

(2008) Proc Natl Acad Sci U S A 105: 20711-20715

Released	2009-01-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Ectromelia virus Homo sapiens
Macromolecule	Interleukin 18 binding protein (protein) Interleukin-18 (protein)

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3J34 \| pdb_00003j34	Download File View File

Structure of HIV-1 Capsid Protein by Cryo-EM

Zhao, G., Perilla, J.R., Yufenyuy, E., Meng, X., Chen, B., Ning, J., Ahn, J., Gronenborn, A.M., Schulten, K., Aiken, C., Zhang, P.

(2013) Nature 497: 643-646

Released	2013-05-29
Method	ELECTRON MICROSCOPY 8.6 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	capsid protein (protein)

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3J3Q \| pdb_00003j3q	Download File View File

Atomic-level structure of the entire HIV-1 capsid

Perilla, J.R., Zhao, G., Zhang, P., Schulten, K.J.

(2013) Nature 497: 643-646

Released	2013-05-29
Method	ELECTRON MICROSCOPY
Organisms	Human immunodeficiency virus 1
Macromolecule	capsid protein (protein)

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3J3Y \| pdb_00003j3y	Download File View File

Atomic-level structure of the entire HIV-1 capsid (186 hexamers + 12 pentamers)

Perilla, J.R., Zhao, G., Zhang, P., Schulten, K.J.

(2013) Nature 497: 643-646

Released	2013-05-29
Method	ELECTRON MICROSCOPY
Organisms	Human immunodeficiency virus 1
Macromolecule	capsid protein (protein)

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3J4F \| pdb_00003j4f	Download File View File

Structure of HIV-1 capsid protein by cryo-EM

Zhao, G., Perilla, J.R., Meng, X., Schulten, K., Zhang, P.

(2013) Nature 497: 643-646

Released	2013-07-24
Method	ELECTRON MICROSCOPY 8.6 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	capsid protein (protein)

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3KEA \| pdb_00003kea	Download File View File

Structure function studies of vaccinia virus host-range protein K1 reveal a novel ankyrin repeat interaction surface for K1s function

Li, Y.

(2010) J Virol 84: 3331-3338

Released	2010-03-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Vaccinia virus
Macromolecule	K1L (protein)

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4C13 \| pdb_00004c13	Download File View File

x-ray crystal structure of Staphylococcus aureus MurE with UDP-MurNAc- Ala-Glu-Lys

Ruane, K.M., Roper, D.I., Fulop, V., Barreteau, H., Boniface, A., Dementin, S., Blanot, D., Mengin-Lecreulx, D., Gobec, S., Dessen, A., Dowson, C.G., Lloyd, A.J.

(2021) Nat Chem Biol

Released	2013-10-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Staphylococcus aureus
Macromolecule	UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--L-LYSINE LIGASE (protein)
Unique Ligands	CL, K, MG, PO4, UML

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4E9O \| pdb_00004e9o	Download File View File

Vaccinia D8L ectodomain structure

Matho, M.H., Zajonc, D.M.

(2012) J Virol 86: 8050-8058

Released	2012-06-06
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Vaccinia virus
Macromolecule	IMV membrane protein (protein)
Unique Ligands	IOD

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4EBQ \| pdb_00004ebq	Download File View File

Fab structure of anti-Vaccinia virus D8L antigen mouse IgG2a LA5

Matho, M.H., Zajonc, D.M.

(2012) J Virol 86: 8050-8058

Released	2012-06-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	anti-Vaccinia D8L antigen monoclonal IgG2a antibody LA5, heavy chain (protein) anti-Vaccinia D8L antigen monoclonal IgG2a antibody LA5, light chain (protein)
Unique Ligands	CL, EDO, GOL, PO4

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4EEE \| pdb_00004eee	Download File View File

Crystal Structure of YLDV 14L IL-18 Binding Protein in Complex with Human IL-18

Krumm, B.E., Xiang, Y., Deng, J.

(2012) PLoS Pathog 8: e1002876-e1002876

Released	2012-09-26
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Homo sapiens Yaba-like disease virus
Macromolecule	14L protein (protein) Interleukin-18 (protein)

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4EKX \| pdb_00004ekx	Download File View File

Crystal Structure of YLDV 14L IL-18 Binding Protein in Complex with Human IL-18

Krumm, B.E., Xiang, Y., Deng, J.

(2012) PLoS Pathog 8: e1002876-e1002876

Released	2012-09-26
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens Yaba-like disease virus
Macromolecule	14L protein (protein) Interleukin-18 (protein)

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4ETQ \| pdb_00004etq	Download File View File

Vaccinia virus D8L IMV envelope protein in complex with Fab of murine IgG2a LA5

Matho, M.H., Zajonc, D.M.

(2012) J Virol 86: 8050-8058

Released	2012-06-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus Vaccinia virus
Macromolecule	IMV membrane protein (protein) anti-vaccinia D8L antigen murine monoclonal IgG2a antibody LA5, heavy chain (protein) anti-vaccinia D8L antigen murine monoclonal IgG2a antibody LA5, light chain (protein)
Unique Ligands	CL, EDO, GOL, SCN

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4LQF \| pdb_00004lqf	Download File View File

Structure of murine IgG2b A2C7-Fab in complex with vaccinia antigen A33R at the resolution of 2.3 Angstroms

Matho, M.H., Schlossman, A.M., Zajonc, D.M.

(2015) PLoS Pathog 11: e1005148-e1005148

Released	2014-08-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus Vaccinia virus
Macromolecule	A33R (protein) Murine IgG2b A2C7 Heavy chain Fab domain (protein) Murine IgG2b A2C7 Light chain Fab domain (protein)
Unique Ligands	ZN

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4LU5 \| pdb_00004lu5	Download File View File

Structure of murine IgG2a A20G2-Fab in complex with vaccinia antigen A33R at the resolution of 2.9 Angstroms

Matho, M.H., Schlossman, A.M., Zajonc, D.M.

(2015) PLoS Pathog 11: e1005148-e1005148

Released	2014-07-30
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Mus musculus Vaccinia virus
Macromolecule	A33R (protein) Murine IgG2a A20G2 Heavy chain Fab domain (protein) Murine IgG2a A20G2 Light chain Fab domain (protein)

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4M1G \| pdb_00004m1g	Download File View File

Structure of murine IgG2a A27D7-Fab in complex with vaccinia antigen A33R at the resolution of 1.6 Angstroms

Matho, M.H., Schlossman, A.M., Zajonc, D.M.

(2015) PLoS Pathog 11: e1005148-e1005148

Released	2014-08-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus Vaccinia virus
Macromolecule	A33R (protein) Murine IgG2a A27D7 Heavy chain Fab domain (protein) Murine IgG2a A27D7 Light chain Fab domain (protein)
Unique Ligands	SO4

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4U6H \| pdb_00004u6h	Download File View File

Vaccinia L1/M12B9-Fab complex

Matho, M.H., Schlossman, A., Zajonc, D.M.

(2014) J Virol 88: 11339-11355

Released	2014-08-06
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Mus musculus Vaccinia virus WR
Macromolecule	Heavy chain of murine anti-vaccinia L1 IgG2a antibody M12B9 (protein) Light chain of murine anti-vaccinia L1 IgG2a antibody M12B9 (protein) Protein L1 (protein)

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4W5X \| pdb_00004w5x	Download File View File

The structure of Vaccina virus H7 protein displays A Novel Phosphoinositide binding fold required for membrane biogenesis

Kolli, S., Deng, J.

(2015) J Virol 89: 2209-2219

Released	2014-12-31
Method	X-RAY DIFFRACTION 2.002 Å
Organisms	Vaccinia virus WR
Macromolecule	Late protein H7 (protein)

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4W60 \| pdb_00004w60	Download File View File

The structure of Vaccina virus H7 protein displays A Novel Phosphoinositide binding fold required for membrane biogenesis

Kolli, S., Meng, X., Wu, X., Shengjuler, D., Cameron, C.E., Xiang, Y., Deng, J.

(2015) J Virol 89: 2209-2219

Released	2014-12-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Vaccinia virus WR
Macromolecule	Late protein H7 (protein)

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4WUM \| pdb_00004wum	Download File View File

X-ray crystal structure of Chalcone Synthase from Freesia hybrida

Almqvist, J., Jiang, W.S., Wang, L., Huang, Y.

(2015) PLoS One 10: e0119054-e0119054

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Freesia hybrid cultivar
Macromolecule	Chalcone synthase (protein)

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4XFS \| pdb_00004xfs	Download File View File

Structure of IL-18 SER Mutant I

Krumm, B.E., Meng, X., Xiang, Y., Deng, J.

(2015) Acta Crystallogr F Struct Biol Commun 71: 710-717

Released	2015-06-10
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-18 (protein)
Unique Ligands	DMS, GOL

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4XFT \| pdb_00004xft	Download File View File

Structure of IL-18 SER Mutant III

Krumm, B.E., Meng, X., Xiang, Y., Deng, J.

(2015) Acta Crystallogr F Struct Biol Commun 71: 710-717

Released	2015-06-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-18 (protein)
Unique Ligands	DMS

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4XFU \| pdb_00004xfu	Download File View File

Structure of IL-18 SER Mutant V

Krumm, B.E., Meng, X., Xiang, Y., Deng, J.

(2015) Acta Crystallogr F Struct Biol Commun 71: 710-717

Released	2015-06-10
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-18 (protein)

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4ZO5 \| pdb_00004zo5	Download File View File

PDE10 complexed with 4-isopropoxy-2-(2-(3-(4-methoxyphenyl)-4-oxo-3,4-dihydroquinazolin-2-yl)ethyl)isoindoline-1,3-dione

Yan, Y.

(2015) Bioorg Med Chem Lett 25: 4893-4898

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A (protein)
Unique Ligands	4PX, 4Q0, MG, ZN