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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Santos, C.R."

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Search Summary

This query matches 82 Structures.

Refinements

Structure Determination Methodology

experimental (82)

Scientific Name of Source Organism

	Thermotoga petrophila RKU-1 (13)
	Xanthomonas citri pv. citri str. 306 (9)
	Amycolatopsis mediterranei (7)
	Lentinula edodes (5)
	Bifidobacterium longum (4)
	Leishmania major (4)
	Aureobasidium namibiae CBS 147.97 (3)
	Bacillus subtilis subsp. subtilis str. 168 (3)
	Blastomyces gilchristii (3)
	Sparus aurata (3)

More...

Taxonomy

	Bacteria (47)
	Eukaryota (28)
	unclassified sequences (4)
	Archaea (3)

Experimental Method

	X-RAY DIFFRACTION (77)
	ELECTRON MICROSCOPY (4)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (82)

Refinement Resolution (Å)

	1.0 - 1.5 (11)
	1.5 - 2.0 (43)
	2.0 - 2.5 (11)
	2.5 - 3.0 (12)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (1)
	2010 - 2014 (38)
	2015 - 2019 (2)
	2020 - 2024 (38)

Enzyme Classification Name

	Hydrolases (22)
	Transferases (8)

Symmetry Type

	Asymmetric (64)
	Cyclic (7)
	Dihedral (13)

SCOP Classification

	Alpha and beta proteins (a/b) (19)
	Alpha and beta proteins (a+b) (5)
	All beta proteins (6)
	Artifacts (4)

AllSelected

1 to 25 of 82 Structures

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1SN0 \| pdb_00001sn0	Download File View File

Crystal Structure Of Sea Bream Transthyretin in complex with thyroxine At 1.9A Resolution

Eneqvist, T., Lundberg, E., Karlsson, A., Huang, S., Santos, C.R., Power, D.M., Sauer-Eriksson, A.E.

(2004) J Biological Chem 279: 26411-26416

Released	2004-08-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Sparus aurata
Macromolecule	transthyretin (protein)
Unique Ligands	SO4, T44

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1SN2 \| pdb_00001sn2	Download File View File

Crystal Structure of Sea Bream Transthyretin at 1.90A Resolution

Eneqvist, T., Lundberg, E., Karlsson, A., Huang, S., Cantos, C.R., Power, D.M., Sauer-Eriksson, A.E.

(2004) J Biological Chem 279: 26411-26416

Released	2004-08-03
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Sparus aurata
Macromolecule	transthyretin (protein)
Unique Ligands	SO4

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1SN5 \| pdb_00001sn5	Download File View File

Crystal Structure of Sea Bream Transthyretin in complex with Triiodothyronine at 1.90A Resolution

Eneqvist, T., Lundberg, E., Karlsson, A., Huang, S., Cantos, C.R., Power, D.M., Sauer-Eriksson, A.E.

(2004) J Biological Chem 279: 26411-26416

Released	2004-08-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Sparus aurata
Macromolecule	transthyretin (protein)
Unique Ligands	SO4, T3

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2L8A \| pdb_00002l8a	Download File View File

Structure of a novel CBM3 lacking the calcium-binding site

Paiva, J.H., Meza, A.N., Sforca, M.L., Navarro, R.Z., Neves, J.L., Santos, C.R., Murakami, M.T., Zeri, A.C.

(2012) Biochem J 441: 95-104

Released	2011-12-21
Method	SOLUTION NMR
Organisms	Bacillus subtilis
Macromolecule	Endoglucanase (protein)

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3H79 \| pdb_00003h79	Download File View File

Crystal structure of Trypanosoma cruzi thioredoxin-like hypothetical protein Q4DV70

Santos, C.R., Fessel, M.R., Vieira, L.C., Krieger, M.A., Goldenberg, S., Guimaraes, B.G., Zanchin, N.I.T., Barbosa, J.A.R.G.

To be published

Released	2009-05-12
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Trypanosoma cruzi
Macromolecule	Thioredoxin-like protein (protein)
Unique Ligands	SCN

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3N8T \| pdb_00003n8t	Download File View File

Native structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon Thermococcus kodakaraensis

Santos, C.R., Tonoli, C.C.C., Trindade, D.M., Betzel, C., Takata, H., Kuriki, T., Kanai, T., Imanaka, T., Arni, R.K., Murakami, M.T.

(2011) Proteins 79: 547-557

Released	2010-10-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermococcus kodakarensis
Macromolecule	alpha-amylase, GH57 family (protein)
Unique Ligands	PEG, PG4

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3N92 \| pdb_00003n92	Download File View File

Crystal structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon Thermococcus kodakaraensis, in complex with glucose

Santos, C.R., Tonoli, C.C.C., Trindade, D.M., Betzel, C., Takata, H., Kuriki, T., Kanai, T., Imanaka, T., Arni, R.K., Murakami, M.T.

(2011) Proteins 79: 547-557

Released	2010-10-27
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Thermococcus kodakarensis
Macromolecule	alpha-amylase, GH57 family (protein)
Unique Ligands	BGC

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3N98 \| pdb_00003n98	Download File View File

Crystal structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon Thermococcus kodakaraensis, in complex with glucose and additives

Santos, C.R., Tonoli, C.C.C., Trindade, D.M., Betzel, C., Takata, H., Kuriki, T., Kanai, T., Imanaka, T., Arni, R.K., Murakami, M.T.

(2011) Proteins 79: 547-557

Released	2010-10-27
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Thermococcus kodakarensis
Macromolecule	alpha-amylase, GH57 family (protein)
Unique Ligands	BGC, DIO, GOL, PEG, PG4

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3NGR \| pdb_00003ngr	Download File View File

Crystal structure of Leishmania nucleoside diphosphate kinase b with unordered nucleotide-binding loop.

Trindade, D.M., Sousa, T.A.C.B., Tonoli, C.C.C., Santos, C.R., Arni, R.K., Ward, R.J., Oliveira, A.H.C., Murakami, M.T.

(2011) Mol Biosyst 7: 2189-2195

Released	2011-04-27
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Leishmania major
Macromolecule	Nucleoside diphosphate kinase (protein)
Unique Ligands	PO4

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3NGS \| pdb_00003ngs	Download File View File

Structure of Leishmania nucleoside diphosphate kinase b with ordered nucleotide-binding loop

Trindade, D.M., Sousa, T.A.C.B., Tonoli, C.C.C., Santos, C.R., Arni, R.K., Ward, R.J., Oliveira, A.H.C., Murakami, M.T.

(2011) Mol Biosyst 7: 2189-2195

Released	2011-04-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Leishmania major
Macromolecule	Nucleoside diphosphate kinase (protein)
Unique Ligands	DTT, PO4

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3NGT \| pdb_00003ngt	Download File View File

Structure of Leishmania NDKb complexed with AMP.

Trindade, D.M., Sousa, T.A.C.B., Tonoli, C.C.C., Santos, C.R., Arni, R.K., Ward, R.J., Oliveira, A.H.C., Murakami, M.T.

(2011) Mol Biosyst 7: 2189-2195

Released	2011-04-27
Method	X-RAY DIFFRACTION 2.57 Å
Organisms	Leishmania major
Macromolecule	Nucleoside diphosphate kinase (protein)
Unique Ligands	AMP

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3NGU \| pdb_00003ngu	Download File View File

Structure of Leishmania NDKb complexed with ADP.

Trindade, D.M., Sousa, T.A.C.B., Tonoli, C.C.C., Santos, C.R., Arni, R.K., Ward, R.J., Oliveira, A.H.C., Murakami, M.T.

(2011) Mol Biosyst 7: 2189-2195

Released	2011-04-27
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Leishmania major
Macromolecule	Nucleoside diphosphate kinase (protein)
Unique Ligands	ADP

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3NIY \| pdb_00003niy	Download File View File

Crystal structure of native xylanase 10B from Thermotoga petrophila RKU-1

Santos, C.R., Meza, A.N., Trindade, D.M., Ruller, R., Squina, F.M., Prade, R.A., Murakami, M.T.

(2010) Biochem Biophys Res Commun 403: 214-219

Released	2011-05-04
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Thermotoga petrophila RKU-1
Macromolecule	Endo-1,4-beta-xylanase (protein)
Unique Ligands	ACT, SO4

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3NJ3 \| pdb_00003nj3	Download File View File

Crystal structure of xylanase 10B from Thermotoga petrophila RKU-1 in complex with xylobiose

Santos, C.R., Meza, A.N., Trindade, D.M., Ruller, R., Squina, F.M., Prade, R.A., Murakami, M.T.

(2010) Biochem Biophys Res Commun 403: 214-219

Released	2011-05-04
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Thermotoga petrophila RKU-1
Macromolecule	Endo-1,4-beta-xylanase (protein)
Unique Ligands	ACT, SO4
Unique branched monosaccharides	XYP

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3O5S \| pdb_00003o5s	Download File View File

Crystal Structure of the endo-beta-1,3-1,4 glucanase from Bacillus subtilis (strain 168)

Santos, C.R., Tonoli, C.C.C., Souza, A.R., Furtado, G.P., Ribeiro, L.F., Ward, R.J., Murakami, M.T.

(2011) Process Biochem 46: 1202-1206

Released	2011-07-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus subtilis
Macromolecule	Beta-glucanase (protein)
Unique Ligands	B3P, CA

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3PRV \| pdb_00003prv	Download File View File

Nucleoside diphosphate kinase B from Trypanosoma cruzi

Souza, T.A.C.B., Trindade, D.M., Tonoli, C.C.C., Santos, C.R., Oliveira, A.H.C., Murakami, M.T.

(2011) Mol Biosyst 7: 2189-2195

Released	2011-05-18
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Trypanosoma cruzi
Macromolecule	Nucleoside diphosphate kinase (protein)

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3PZ9 \| pdb_00003pz9	Download File View File

Native structure of endo-1,4-beta-D-mannanase from Thermotoga petrophila RKU-1

Santos, C.R., Meza, A.N., Paiva, J.H., Silva, J.C., Ruller, R., Prade, R.A., Squina, F.M., Murakami, M.T.

To be published

Released	2011-12-28
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Thermotoga petrophila RKU-1
Macromolecule	Mannan endo-1,4-beta-mannosidase. Glycosyl Hydrolase family 5 (protein)

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3PZG \| pdb_00003pzg	Download File View File

I222 crystal form of the hyperthermostable endo-1,4-beta-D-mannanase from Thermotoga petrophila RKU-1

Santos, C.R., Meza, A.N., Paiva, J.H., Silva, J.C., Ruller, R., Prade, R.A., Squina, F.M., Murakami, M.T.

To be published

Released	2011-12-28
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Thermotoga petrophila RKU-1
Macromolecule	Mannan endo-1,4-beta-mannosidase. Glycosyl Hydrolase family 5 (protein)
Unique Ligands	GOL, PO4, TRS

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3PZI \| pdb_00003pzi	Download File View File

Structure of the hyperthermostable endo-1,4-beta-D-mannanase from Thermotoga petrophila RKU-1 in complex with beta-D-glucose

Santos, C.R., Meza, A.N., Paiva, J.H., Silva, J.C., Ruller, R., Prade, R.A., Squina, F.M., Murakami, M.T.

To be published

Released	2011-12-28
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Thermotoga petrophila RKU-1
Macromolecule	Mannan endo-1,4-beta-mannosidase. Glycosyl Hydrolase family 5 (protein)
Unique Ligands	BGC

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3PZM \| pdb_00003pzm	Download File View File

Structure of the hyperthermostable endo-1,4-beta-D-mannanase from Thermotoga petrophila RKU-1 with three glycerol molecules

Santos, C.R., Meza, A.N., Paiva, J.H., Silva, J.C., Ruller, R., Prade, R.A., Squina, F.M., Murakami, M.T.

To be published

Released	2011-12-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermotoga petrophila RKU-1
Macromolecule	Mannan endo-1,4-beta-mannosidase. Glycosyl Hydrolase family 5 (protein)
Unique Ligands	GOL, TRS

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3PZN \| pdb_00003pzn	Download File View File

Structure of the hyperthermostable endo-1,4-beta-D-mannanase from Thermotoga petrophila RKU-1 with citrate and glycerol

Santos, C.R., Meza, A.N., Paiva, J.H., Silva, J.C., Ruller, R., Prade, R.A., Squina, F.M., Murakami, M.T.

To be published

Released	2011-12-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermotoga petrophila RKU-1
Macromolecule	Mannan endo-1,4-beta-mannosidase. Glycosyl Hydrolase family 5 (protein)
Unique Ligands	CIT, GOL

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3PZO \| pdb_00003pzo	Download File View File

Structure of the hyperthermostable endo-1,4-beta-D-mannanase from Thermotoga petrophila RKU-1 in complex with three maltose molecules

Santos, C.R., Meza, A.N., Paiva, J.H., Silva, J.C., Ruller, R., Prade, R.A., Squina, F.M., Murakami, M.T.

To be published

Released	2011-12-28
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Thermotoga petrophila RKU-1
Macromolecule	Mannan endo-1,4-beta-mannosidase. Glycosyl Hydrolase family 5 (protein)
Unique Ligands	GOL
Unique branched monosaccharides	GLC

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3PZQ \| pdb_00003pzq	Download File View File

Structure of the hyperthermostable endo-1,4-beta-D-mannanase from Thermotoga petrophila RKU-1 with maltose and glycerol

Santos, C.R., Meza, A.N., Paiva, J.H., Silva, J.C., Ruller, R., Prade, R.A., Squina, F.M., Murakami, M.T.

To be published

Released	2011-12-28
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Thermotoga petrophila RKU-1
Macromolecule	Mannan endo-1,4-beta-mannosidase. Glycosyl Hydrolase family 5 (protein)
Unique branched monosaccharides	GLC

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3PZT \| pdb_00003pzt	Download File View File

Structure of the endo-1,4-beta-glucanase from Bacillus subtilis 168 with manganese(II) ion

Santos, C.R., Paiva, J.H., Akao, P.K., Meza, A.N., Silva, J.C., Squina, F.M., Ward, R.J., Ruller, R., Murakami, M.T.

(2012) Biochem J 441: 95-104

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Endoglucanase (protein)
Unique Ligands	GOL, MN, PO4

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3PZU \| pdb_00003pzu	Download File View File

P212121 crystal form of the endo-1,4-beta-glucanase from Bacillus subtilis 168

Santos, C.R., Paiva, J.H., Akao, P.K., Meza, A.N., Silva, J.C., Squina, F.M., Ward, R.J., Ruller, R., Murakami, M.T.

(2012) Biochem J 441: 95-104

Released	2011-09-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Endoglucanase (protein)
Unique Ligands	GOL

1 to 25 of 82 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1SN0 | pdb_00001sn0

1SN2 | pdb_00001sn2

1SN5 | pdb_00001sn5

2L8A | pdb_00002l8a

3H79 | pdb_00003h79

3N8T | pdb_00003n8t

3N92 | pdb_00003n92

3N98 | pdb_00003n98

3NGR | pdb_00003ngr

3NGS | pdb_00003ngs

3NGT | pdb_00003ngt

3NGU | pdb_00003ngu

3NIY | pdb_00003niy

3NJ3 | pdb_00003nj3

3O5S | pdb_00003o5s

3PRV | pdb_00003prv

3PZ9 | pdb_00003pz9

3PZG | pdb_00003pzg

3PZI | pdb_00003pzi

3PZM | pdb_00003pzm

3PZN | pdb_00003pzn

3PZO | pdb_00003pzo

3PZQ | pdb_00003pzq

3PZT | pdb_00003pzt

3PZU | pdb_00003pzu