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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Semchonok, D.A."

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Search Summary

This query matches 55 Structures.

Refinements

Structure Determination Methodology

experimental (55)

Scientific Name of Source Organism

	Homo sapiens (34)
	Mus musculus (24)
	Human immunodeficiency virus 1 (17)
	Saccharomyces cerevisiae (12)
	Arabidopsis thaliana (6)
	Bos taurus (4)
	Saccharomyces cerevisiae S288C (2)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (2)
	Candida albicans SC5314 (1)
	Plasmodium falciparum (1)

More...

Taxonomy

	Eukaryota (55)
	Riboviria (17)
	Bacteria (2)

Experimental Method

	ELECTRON MICROSCOPY (32)
	X-RAY DIFFRACTION (20)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (55)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (5)
	2.0 - 2.5 (4)
	2.5 - 3.0 (7)
	3.0 - 3.5 (4)
	3.5 - 4.0 (4)
	4.0 - 4.5 (4)
	> 4.5 (22)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (1)
	2010 - 2014 (11)
	2015 - 2019 (12)
	2020 - 2024 (23)
	2025 - 2029 (3)

Enzyme Classification Name

Hydrolases (47)

Membrane Protein Annotation

mpstruc (12)

Symmetry Type

	Asymmetric (32)
	Cyclic (24)
	Helical (3)

SCOP Classification

	Alpha and beta proteins (a/b) (12)
	All alpha proteins (4)
	Artifacts (2)

AllSelected

1 to 25 of 55 Structures

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1R8Q	Download File View File

FULL-LENGTH ARF1-GDP-MG IN COMPLEX WITH BREFELDIN A AND A SEC7 DOMAIN

Renault, L., Guibert, B., Cherfils, J.

(2003) Nature 426: 525-530

Released	2004-01-20
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	ADP-ribosylation factor 1 (protein) Arno (protein)
Unique Ligands	AFB, G3D, MG, ZN

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1R8S	Download File View File

ARF1[DELTA1-17]-GDP IN COMPLEX WITH A SEC7 DOMAIN CARRYING THE MUTATION OF THE CATALYTIC GLUTAMATE TO LYSINE

Renault, L., Guibert, B., Cherfils, J.

(2003) Nature 426: 525-530

Released	2004-01-20
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	ADP-ribosylation factor 1 (protein) Arno (protein)
Unique Ligands	BME, FMT, GDP, SO3, SO4

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1RE0	Download File View File

Structure of ARF1-GDP bound to Sec7 domain complexed with Brefeldin A

Goldberg, J., Mossessova, E.

(2003) Mol Cell 12: 1403-1411

Released	2003-12-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	ADP-ribosylation factor 1 (protein) ARF guanine-nucleotide exchange factor 1 (protein)
Unique Ligands	AFB, CIT, GDP, MG

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1S9D	Download File View File

ARF1[DELTA 1-17]-GDP-MG IN COMPLEX WITH BREFELDIN A AND A SEC7 DOMAIN

Renault, L., Guibert, B., Cherfils, J.

(2003) Nature 426: 525-530

Released	2004-02-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	ADP-Ribosylation Factor 1 (protein) Arno (protein)
Unique Ligands	AFB, GDP, MG

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1U81	Download File View File

Delta-17 Human ADP Ribosylation Factor 1 Complexed with GDP

Seidel, R.D., Amor, J.C., Kahn, R.A., Prestegard, J.H.

(2004) J Biological Chem 279: 48307-48318

Released	2004-10-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor 1 (protein)
Unique Ligands	GDP, MG

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2K5U	Download File View File

Solution structure of myirstoylated yeast ARF1 protein, GDP-bound

Prestegard, J., Liu, Y.

(2009) Structure 17: 79-87

Released	2009-01-27
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	ADP-ribosylation factor 1 (protein)
Unique Ligands	GDP

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2KSQ	Download File View File

The myristoylated yeast ARF1 in a GTP and bicelle bound conformation

Liu, Y., Kahn, R., Prestegard, J.

(2010) Nat Struct Mol Biol 17: 876-881

Released	2010-07-07
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	ADP-ribosylation factor 1 (protein)
Unique Ligands	GTP, MTN

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3AQ4	Download File View File

Molecular insights into plant cell proliferation disturbance by Agrobacterium protein 6b

Wang, M.M., Yuan, Y.A.

(2011) Genes Dev 25: 64-76

Released	2011-01-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Arabidopsis thaliana
Macromolecule	ADP-ribosylation factor 1 (protein)
Unique Ligands	GDP, MG

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3LRP	Download File View File

Crystal Structure of Plasmodium falciparum ADP-Ribosylation Factor 1

Cook, W.J., Chattopadhyay, D.

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 1426-1431

Released	2010-11-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Plasmodium falciparum
Macromolecule	ADP-ribosylation factor 1 (protein)
Unique Ligands	GDP, MG, SO4

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3O47	Download File View File

Crystal structure of ARFGAP1-ARF1 fusion protein

Wang, H., Tong, Y., Nedyalkova, L., Tempel, W., Guan, X., Crombet, L., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2010-08-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor GTPase-activating protein 1, ADP-ribosylation factor 1 (protein)
Unique Ligands	GDP, ZN

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3TJZ	Download File View File

Crystal Structure of Arf1 Bound to the gamma/zeta-COP Core Complex

Goldberg, J., Yu, X., Breitman, M.

(2012) Cell 148: 530-542

Released	2012-02-22
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bos taurus Saccharomyces cerevisiae S288C
Macromolecule	ADP-ribosylation factor 1 (protein) Coatomer subunit gamma (protein) Coatomer subunit zeta-1 (protein)
Unique Ligands	GNP, MG

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4HMY	Download File View File

Structural basis for recruitment and activation of the AP-1 clathrin adaptor complex by Arf1

Ren, X., Farias, G.G., Canagarajah, B.J., Bonifacino, J.S., Hurley, J.H.

(2013) Cell 152: 755-767

Released	2013-03-06
Method	X-RAY DIFFRACTION 7 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	ADP-ribosylation factor 1 (protein) AP-1 complex subunit beta-1 (protein) AP-1 complex subunit gamma-1 (protein) AP-1 complex subunit mu-1 (protein) AP-1 complex subunit sigma-3 (protein)
Unique Ligands	GTP, MG

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4LDV	Download File View File

Crystal structure of the DNA binding domain of A. thailana auxin response factor 1

boer, D.R., Freire-Rios, A., van den Berg, W.M.A., Weijers, D., Coll, M.

(2014) Cell 156: 577-589

Released	2014-02-12
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Arabidopsis thaliana
Macromolecule	Auxin response factor 1 (protein)
Unique Ligands	CL, FMT, IOD

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4LDW	Download File View File

Crystal structure of the DNA Binding Domain of arabidopsis thaliana auxin response factor 1, P21 structure

boer, D.R., Coll, M.

(2014) Cell 156: 577-589

Released	2014-02-12
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Arabidopsis thaliana
Macromolecule	Auxin response factor 1 (protein)
Unique Ligands	CL

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4LDX	Download File View File

Crystal structure of the DNA binding domain of arabidopsis thaliana auxin response factor 1 (ARF1) in complex with protomor-like sequence ER7

Boer, D.R., Freire-Rios, A., van den Berg, W.M.A., Weijers, D., Coll, M.

(2014) Cell 156: 577-589

Released	2014-02-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Arabidopsis thaliana
Macromolecule	Auxin response factor 1 (protein) ER7, forward sequence (nucleic acid) ER7, reverse sequence (nucleic acid)

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4LDY	Download File View File

Crystal structure of the DNA binding domain of the G245A mutant of arabidopsis thaliana auxin reponse factor 1

Boer, D.R., Freire-Rios, A., van den Berg, W.M.A., Weijers, D., Coll, M.

(2014) Cell 156: 577-589

Released	2014-02-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Arabidopsis thaliana
Macromolecule	Auxin response factor 1 (protein)
Unique Ligands	CL

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4Q66	Download File View File

Structure of Exomer bound to Arf1.

Paczkowski, J.E., Fromme, J.C.

(2014) Dev Cell 30: 610-624

Released	2014-09-17
Method	X-RAY DIFFRACTION 3.354 Å
Organisms	Saccharomyces cerevisiae R008 Saccharomyces cerevisiae S288C
Macromolecule	ADP-ribosylation factor 1 (protein) Chs5p (protein) Protein BCH1 (protein)
Unique Ligands	GNP, MG

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5NZR	Download File View File

The structure of the COPI coat leaf

Dodonova, S.O., Aderhold, P., Kopp, J., Ganeva, I., Roehling, S., Hagen, W.J.H., Sinning, I., Wieland, F., Briggs, J.A.G.

(2017) Elife 6:

Released	2017-06-28
Method	ELECTRON MICROSCOPY 9.2 Å
Organisms	Mus musculus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 7

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5NZS	Download File View File

The structure of the COPI coat leaf in complex with the ArfGAP2 uncoating factor

Dodonova, S.O., Aderhold, P., Kopp, J., Ganeva, I., Roehling, S., Hagen, W.J.H., Sinning, I., Wieland, F., Briggs, J.A.G.

(2017) Elife 6:

Released	2017-06-28
Method	ELECTRON MICROSCOPY 10.1 Å
Organisms	Mus musculus Rattus norvegicus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 8

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5NZT	Download File View File

The structure of the COPI coat linkage I

Dodonova, S.O., Aderhold, P., Kopp, J., Ganeva, I., Roehling, S., Hagen, W.J.H., Sinning, I., Wieland, F., Briggs, J.A.G.

(2017) Elife 6:

Released	2017-06-28
Method	ELECTRON MICROSCOPY 17 Å
Organisms	Mus musculus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 8

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5NZU	Download File View File

The structure of the COPI coat linkage II

Dodonova, S.O., Aderhold, P., Kopp, J., Ganeva, I., Roehling, S., Hagen, W.J.H., Sinning, I., Wieland, F., Briggs, J.A.G.

(2017) Elife 6:

Released	2017-06-28
Method	ELECTRON MICROSCOPY 15 Å
Organisms	Mus musculus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 7

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5NZV	Download File View File

The structure of the COPI coat linkage IV

Dodonova, S.O., Aderhold, P., Kopp, J., Ganeva, I., Roehling, S., Hagen, W.J.H., Sinning, I., Wieland, F., Briggs, J.A.G.

(2017) Elife 6:

Released	2017-06-28
Method	ELECTRON MICROSCOPY 17.3 Å
Organisms	Mus musculus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 8

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6CM9	Download File View File

Structure of the cargo bound AP-1:Arf1:tetherin-Nef closed trimer monomeric subunit

Morris, K.L., Buffalo, C.Z., Ren, X., Hurley, J.H.

(2018) Cell 174: 659-671.e14

Released	2018-08-08
Method	ELECTRON MICROSCOPY 3.73 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 6
Unique Ligands	GTP, MG

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6CRI	Download File View File

Structure of the cargo bound AP-1:Arf1:tetherin-Nef stable closed trimer

Morris, K.L., Buffalo, C.Z., Hurley, J.H.

(2018) Cell 174: 659-671.e14

Released	2018-08-01
Method	ELECTRON MICROSCOPY 6.8 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 6
Unique Ligands	GTP, MG

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6D83	Download File View File

Structure of the cargo bound AP-1:Arf1:tetherin-Nef (L164A, L165A) dileucine mutant dimer monomeric subunit

Buffalo, C.Z., Morris, K.L., Hurley, J.H.

(2018) Cell 174: 659-671.e14

Released	2018-08-08
Method	ELECTRON MICROSCOPY 4.27 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 6
Unique Ligands	GTP, MG