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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Vogeli, B."

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Search Summary

This query matches 40 Structures.

Refinements

Structure Determination Methodology

experimental (40)

Scientific Name of Source Organism

	Homo sapiens (15)
	Kitasatospora setae KM-6054 (5)
	Candida tropicalis (4)
	synthetic construct (4)
	Arabidopsis thaliana (2)
	Methanothermococcus thermolithotrophicus (2)
	Methanothermococcus thermolithotrophicus DSM 2095 (2)
	Erythrobacter sp. NAP1 (1)
	Methanocaldococcus jannaschii (1)
	Murine cytomegalovirus (strain K181) (1)

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Taxonomy

	Eukaryota (22)
	Bacteria (8)
	Archaea (5)
	other sequences (4)
	Riboviria (2)
	Duplodnaviria (1)

Experimental Method

	SOLUTION NMR (21)
	X-RAY DIFFRACTION (17)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (38)
	RNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (7)
	2.0 - 2.5 (5)
	2.5 - 3.0 (5)
	3.0 - 3.5 (2)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (2)
	2015 - 2019 (21)
	2020 - 2024 (16)

Enzyme Classification Name

	Oxidoreductases (7)
	Transferases (5)
	Isomerases (9)
	Hydrolases (4)
	Lyases (2)
	Ligases (1)

Symmetry Type

	Asymmetric (20)
	Dihedral (12)
	Cyclic (6)

SCOP Classification

	Alpha and beta proteins (a/b) (4)
	All beta proteins (7)
	Artifacts (7)
	All alpha proteins (3)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 40 Structures

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2GTV \| pdb_00002gtv	Download File View File

NMR structure of monomeric chorismate mutase from Methanococcus jannaschii

Vogeli, B.R.

(2007) Nat Struct Mol Biol 14: 1202-1206

Released	2006-10-31
Method	SOLUTION NMR
Organisms	Methanocaldococcus jannaschii
Macromolecule	chorismate mutase (protein)
Unique Ligands	TSA

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2LUM \| pdb_00002lum	Download File View File

Three-State Ensemble obtained from eNOEs of the Third Immunoglobulin Binding Domain of Protein G (GB3)

Vogeli, B., Kazemi, S., Guntert, P., Riek, R.

(2012) Nat Struct Mol Biol 19: 1053-1057

Released	2012-08-29
Method	SOLUTION NMR
Organisms	Streptococcus sp. 'group G
Macromolecule	Immunoglobulin G-binding protein G (protein)

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2MIZ \| pdb_00002miz	Download File View File

Structure of the m04/gp34 mouse Cytomegalovirus Immunoevasin core domain

Sgourakis, N.G., Natarajan, K., Margulies, D.H., Bax, A.

(2014) Structure 22: 1263-1273

Released	2014-07-16
Method	SOLUTION NMR
Organisms	Murine cytomegalovirus (strain K181)
Macromolecule	m04 immunoevasin (protein)

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2MZU \| pdb_00002mzu	Download File View File

Extending the eNOE data set of large proteins by evaluation of NOEs with unresolved diagonals

Chi, C.N., Strotz, D., Riek, R., Voegeli, B.

(2015) J Biomol NMR 62: 63-69

Released	2015-04-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)

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2N0T \| pdb_00002n0t	Download File View File

Structural ensemble of the enzyme cyclophilin reveals an orchestrated mode of action at atomic resolution

Chi, C.N., Voegeli, B., Bibow, S., Strotz, D., Orts, J., Guntert, P., Riek, R.

(2015) Angew Chem Int Ed Engl 54: 11657-11661

Released	2015-08-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)

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4W99 \| pdb_00004w99	Download File View File

Apo-structure of the Y79F,W322E-double mutant of Etr1p

Quade, N., Voegeli, B., Rosenthal, R., Erb, T.J.

(2015) Nat Chem Biol 11: 398-400

Released	2015-03-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Candida tropicalis
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1, mitochondrial (protein)
Unique Ligands	GOL, SO4

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4WAS \| pdb_00004was	Download File View File

STRUCTURE OF THE ETR1P/NADP/CROTONYL-COA COMPLEX

Quade, N., Voegeli, B., Rosenthal, R., Capitani, G., Erb, T.J.

(2015) Nat Chem Biol 11: 398-400

Released	2015-03-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Candida tropicalis
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1, mitochondrial (protein)
Unique Ligands	COO, NAP

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5LB9 \| pdb_00005lb9	Download File View File

Structure of the T175V Etr1p mutant in the monoclinic form P21

Wagner, T., Rosenthal, R.G., Voegeli, B., Shima, S., Erb, T.J.

(2017) Nat Chem Biol 13: 745-749

Released	2017-05-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Candida tropicalis
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1, mitochondrial (protein)
Unique Ligands	GOL, NA, NAP, SO4

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5LBX \| pdb_00005lbx	Download File View File

Structure of the T175V Etr1p mutant in the trigonal form P312 in complex with NADP and crotonyl-CoA

Wagner, T., Rosenthal, R.G., Voegeli, B., Shima, S., Erb, T.J.

(2017) Nat Chem Biol 13: 745-749

Released	2017-05-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Candida tropicalis
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1, mitochondrial (protein)
Unique Ligands	CL, COO, NAP, SO4

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6BY4 \| pdb_00006by4	Download File View File

Single-State 14-mer UUCG Tetraloop calculated from Exact NOEs

Nichols, P.J., Henen, M.A., Born, A., Strotz, D., Guntert, P., Vogeli, B.

(2018) Commun Biol 1: 61-61

Released	2018-06-13
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	RNA (5'-R(PGPGPCPAPCPUPUPCPGPGPUPGPCPC)-3') (nucleic acid)

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6BY5 \| pdb_00006by5	Download File View File

Two-State 14-mer UUCG Tetraloop calculated from Exact NOEs (State one: Conformers 1-5, State Two: Conformers 6-10)

Nichols, P.J., Henen, M.A., Born, A., Strotz, D., Guntert, P., Vogeli, B.

(2018) Commun Biol 1: 61-61

Released	2018-06-13
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	RNA (5'-R(PGPGPCPAPCPUPUPCPGPGPUPGPCPC)-3') (nucleic acid)

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6EP8 \| pdb_00006ep8	Download File View File

InhA Y158F mutant in complex with NADH from Mycobacterium tuberculosis

Wagner, T., Voegeli, B., Rosenthal, R.G., Stoffel, G., Shima, S., Kiefer, P., Cortina, N., Erb, T.J.

(2018) J Biological Chem 293: 17200-17207

Released	2018-09-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADH] (protein)
Unique Ligands	GOL, MPD, NA, NAD

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6EQO \| pdb_00006eqo	Download File View File

Tri-functional propionyl-CoA synthase of Erythrobacter sp. NAP1 with bound NADP+ and phosphomethylphosphonic acid adenylate ester

Zarzycki, J., Bernhardsgruetter, I., Voegeli, B., Wagner, T., Engilberge, S., Girard, E., Shima, S., Erb, T.J.

(2018) Nat Chem Biol 14: 1127-1132

Released	2018-10-24
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Erythrobacter sp. NAP1
Macromolecule	Acetyl-coenzyme A synthetase (protein)
Unique Ligands	ACP, NAP

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6ES5 \| pdb_00006es5	Download File View File

Structure and dynamics conspire in the evolution of affinity between intrinsically disordered proteins

Chi, N.C.

(2018) Sci Adv 4: eaau4130-eaau4130

Released	2018-10-31
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CID (protein) NCBD (protein)

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6ES6 \| pdb_00006es6	Download File View File

Structure and dynamics conspire in the evolution of affinity between intrinsically disordered proteins

Chi, N.C.

(2018) Sci Adv 4: eaau4130-eaau4130

Released	2018-10-31
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CID (protein) NCBD (protein)

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6ES7 \| pdb_00006es7	Download File View File

Structure and dynamics conspire in the evolution of affinity between intrinsically disordered proteins

Chi, N.C.

(2018) Sci Adv 4: eaau4130-eaau4130

Released	2018-10-31
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CREB-binding protein (protein) Nuclear receptor coactivator 3 (protein)

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6ESQ \| pdb_00006esq	Download File View File

Structure of the acetoacetyl-CoA thiolase/HMG-CoA synthase complex from Methanothermococcus thermolithotrophicus soaked with acetyl-CoA

Voegeli, B., Engilberge, S., Girard, E., Riobe, F., Maury, O., Erb, J.T., Shima, S., Wagner, T.

(2018) Proc Natl Acad Sci U S A 115: 3380-3385

Released	2018-03-14
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Methanothermococcus thermolithotrophicus
Macromolecule	HydroxyMethylGlutaryl-CoA synthase (protein) Pfam DUF35 (protein) acetoacetyl-CoA thiolase (protein)
Unique Ligands	CL, COA, K, NA, ZN

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6ET9 \| pdb_00006et9	Download File View File

Structure of the acetoacetyl-CoA-thiolase/HMG-CoA-synthase complex from Methanothermococcus thermolithotrophicus at 2.75 A

Engilberge, S., Voegeli, B., Girard, E., Riobe, F., Maury, O., Erb, T.J., Shima, S., Wagner, T.

(2018) Proc Natl Acad Sci U S A 115: 3380-3385

Released	2018-03-14
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Methanothermococcus thermolithotrophicus
Macromolecule	Acetyl-CoA acetyltransferase thiolase (protein) HydroxyMethylGlutaryl-CoA synthase (protein) Pfam DUF35 (protein)
Unique Ligands	CL, GOL, K, MG, NA, TRS, ZN

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6HR7 \| pdb_00006hr7	Download File View File

HMG-CoA reductase from Methanothermococcus thermolithotrophicus apo form at 2.4 A resolution

Wagner, T., Voegeli, B., Erb, T.J., Shima, S.

(2019) FEBS Lett 593: 543-553

Released	2019-02-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methanothermococcus thermolithotrophicus DSM 2095
Macromolecule	HMG-CoA reductase (protein)
Unique Ligands	CL, DTT, GOL, NA, P6G, SO4

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6HR8 \| pdb_00006hr8	Download File View File

HMG-CoA reductase from Methanothermococcus thermolithotrophicus in complex with NADPH at 2.9 A resolution

Wagner, T., Voegeli, B., Erb, T.J., Shima, S.

(2019) FEBS Lett 593: 543-553

Released	2019-02-13
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Methanothermococcus thermolithotrophicus DSM 2095
Macromolecule	HMG-CoA reductase (protein)
Unique Ligands	NA, NAP, PEG, SO4

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6NA3 \| pdb_00006na3	Download File View File

Crystal Structure of Apo-form of ECR

DeMirci, H.

(2022) ACS Cent Sci

Released	2019-12-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Kitasatospora setae KM-6054
Macromolecule	Putative crotonyl-CoA reductase (protein)
Unique Ligands	CL, VES

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6NA4 \| pdb_00006na4	Download File View File

Co crystal structure of ECR with Butryl-CoA

DeMirci, H.

(2022) ACS Cent Sci

Released	2020-03-18
Method	X-RAY DIFFRACTION 1.722 Å
Organisms	Kitasatospora setae KM-6054
Macromolecule	Putative crotonyl-CoA reductase (protein)
Unique Ligands	2EC, NAP, NDP, VES, YAS

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6NA5 \| pdb_00006na5	Download File View File

Crystal Structure of ECR in complex with NADP+

DeMirci, H.

(2022) ACS Cent Sci

Released	2019-12-11
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Kitasatospora setae KM-6054
Macromolecule	Putative crotonyl-CoA reductase (protein)
Unique Ligands	NDP

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6NA6 \| pdb_00006na6	Download File View File

Serial Femtosecond X-ray Crystallography Structure of ECR in complex with NADPH

DeMirci, H.

(2022) ACS Cent Sci

Released	2019-12-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Kitasatospora setae KM-6054
Macromolecule	Putative crotonyl-CoA reductase (protein)
Unique Ligands	NDP

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6OWE \| pdb_00006owe	Download File View File

Enoyl-CoA carboxylases/reductases in complex with ethylmalonyl CoA

DeMirci, H.

(2019) Proc Natl Acad Sci U S A 116: 13964-13969

Released	2019-06-26
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Kitasatospora setae KM-6054
Macromolecule	Crotonyl-CoA carboxylase/reductase (protein)
Unique Ligands	IMD, N9V, NDP

1 to 25 of 40 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2GTV | pdb_00002gtv

2LUM | pdb_00002lum

2MIZ | pdb_00002miz

2MZU | pdb_00002mzu

2N0T | pdb_00002n0t

4W99 | pdb_00004w99

4WAS | pdb_00004was

5LB9 | pdb_00005lb9

5LBX | pdb_00005lbx

6BY4 | pdb_00006by4

6BY5 | pdb_00006by5

6EP8 | pdb_00006ep8

6EQO | pdb_00006eqo

6ES5 | pdb_00006es5

6ES6 | pdb_00006es6

6ES7 | pdb_00006es7

6ESQ | pdb_00006esq

6ET9 | pdb_00006et9

6HR7 | pdb_00006hr7

6HR8 | pdb_00006hr8

6NA3 | pdb_00006na3

6NA4 | pdb_00006na4

6NA5 | pdb_00006na5

6NA6 | pdb_00006na6

6OWE | pdb_00006owe