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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "White, M.F."

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Search Summary

This query matches 83 Structures.

Refinements

Structure Determination Methodology

experimental (83)

Scientific Name of Source Organism

	Saccharolobus solfataricus P2 (13)
	Saccharolobus solfataricus (11)
	synthetic construct (8)
	Pyrobaculum spherical virus (5)
	Sulfolobus islandicus rudivirus 1 variant XX (5)
	Dickeya chrysanthemi (4)
	Homo sapiens (4)
	Pseudomonas aeruginosa PAO1 (4)
	Staphylococcus aureus (4)
	Mus musculus (3)

More...

Taxonomy

	Bacteria (35)
	Archaea (32)
	other sequences (8)
	Adnaviria (7)
	Eukaryota (5)
	Viruses incertae sedis (5)
	Eukaryota (eukaryotes) (3)

Experimental Method

	X-RAY DIFFRACTION (77)
	ELECTRON MICROSCOPY (4)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (83)
	RNA (10)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (23)
	2.0 - 2.5 (32)
	2.5 - 3.0 (11)
	3.0 - 3.5 (4)
	3.5 - 4.0 (3)
	> 4.5 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (7)
	2005 - 2009 (21)
	2010 - 2014 (36)
	2015 - 2019 (5)
	2020 - 2024 (13)

Enzyme Classification Name

	Hydrolases (17)
	Transferases (8)
	Isomerases (4)
	Ligases (1)

Symmetry Type

	Asymmetric (36)
	Cyclic (41)
	Dihedral (4)
	Helical (2)

SCOP Classification

	Alpha and beta proteins (a+b) (15)
	Alpha and beta proteins (a/b) (13)
	Artifacts (6)
	All alpha proteins (3)
	All beta proteins (3)

AllSelected

1 to 25 of 83 Structures

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1E58 \| pdb_00001e58	Download File View File

E.coli cofactor-dependent phosphoglycerate mutase

Bond, C.S., Hunter, W.N.

(2001) J Biological Chem 276: 3247

Released	2001-03-20
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Escherichia coli K-12
Macromolecule	PHOSPHOGLYCERATE MUTASE (protein)
Unique Ligands	CL, SO4

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1H0X \| pdb_00001h0x	Download File View File

Structure of Alba: an archaeal chromatin protein modulated by acetylation

Wardleworth, B.N., Russell, R.J.M., Bell, S.D., Taylor, G.L., White, M.F.

(2002) EMBO J 21: 4654

Released	2002-09-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharolobus solfataricus
Macromolecule	DNA BINDING PROTEIN SSO10B (protein)

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1H0Y \| pdb_00001h0y	Download File View File

Structure of Alba: an archaeal chromatin protein modulated by acetylation

Wardleworth, B.N., Russell, R.J.M., Bell, S.D., Taylor, G.L., White, M.F.

(2002) EMBO J 21: 4654

Released	2002-09-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharolobus solfataricus
Macromolecule	DNA BINDING PROTEIN SSO10B (protein)
Unique Ligands	SO4

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1HH1 \| pdb_00001hh1	Download File View File

THE STRUCTURE OF HJC, A HOLLIDAY JUNCTION RESOLVING ENZYME FROM SULFOLOBUS SOLFATARICUS

Bond, C.S., Kvaratskhelia, M., Richard, D., White, M.F., Hunter, W.N.

(2001) Proc Natl Acad Sci U S A 98: 5509

Released	2001-04-06
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Saccharolobus solfataricus
Macromolecule	HOLLIDAY JUNCTION RESOLVING ENZYME HJC (protein)

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1IRS \| pdb_00001irs	Download File View File

IRS-1 PTB DOMAIN COMPLEXED WITH A IL-4 RECEPTOR PHOSPHOPEPTIDE, NMR, MINIMIZED AVERAGE STRUCTURE

Zhou, M.-M., Huang, B., Olejniczak, E.T., Meadows, R.P., Shuker, S.B., Miyazaki, M., Trub, T., Shoelson, S.E., Feisk, S.W.

(1996) Nat Struct Biol 3: 388-393

Released	1997-05-15
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	IL-4 RECEPTOR PHOSPHOPEPTIDE (protein) IRS-1 (protein)

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1O7I \| pdb_00001o7i	Download File View File

Crystal structure of a single stranded DNA binding protein

Kerr, I.D., Naismith, J.H.

(2003) EMBO J 22: 2561-2570

Released	2003-06-25
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	SINGLE STRANDED DNA BINDING PROTEIN (protein)
Unique Ligands	SO4

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1OB8 \| pdb_00001ob8	Download File View File

Holliday Junction Resolving Enzyme

Middleton, C.L., Parker, J.L., Richard, D.J., White, M.F., Bond, C.S.

(2004) Nucleic Acids Res 32: 5442

Released	2004-10-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharolobus solfataricus
Macromolecule	HOLLIDAY-JUNCTION RESOLVASE (protein)
Unique Ligands	EDO, SO4

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1OB9 \| pdb_00001ob9	Download File View File

Holliday Junction Resolving Enzyme

Middleton, C.L., Parker, J.L., Richard, D.J., White, M.F., Bond, C.S.

(2004) Nucleic Acids Res 32: 5442

Released	2004-10-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharolobus solfataricus
Macromolecule	HOLLIDAY JUNCTION RESOLVASE (protein)
Unique Ligands	EDO, FMT

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2BGW \| pdb_00002bgw	Download File View File

XPF from Aeropyrum pernix, complex with DNA

Newman, M., Murray-Rust, J., Lally, J., Rudolf, J., Fadden, A., Knowles, P.P., White, M.F., McDonald, N.Q.

(2005) EMBO J 24: 895-905

Released	2005-02-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Aeropyrum pernix synthetic construct
Macromolecule	XPF ENDONUCLEASE (protein) 5'-D(GPAPTPCPAPCPAPGPAPTP GPCPTPGPA)-3' (nucleic acid) 5'-D(TPCPAPGPCPAPTPCPTPGP TPGPAPTPC)-3' (nucleic acid)
Unique Ligands	MG, SO4

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2BHN \| pdb_00002bhn	Download File View File

XPF from Aeropyrum pernix

Newman, M., Murray-Rust, J., Lally, J., Rudolf, J., Fadden, A., Knowles, P.P., White, M.F., McDonald, N.Q.

(2005) EMBO J 24: 895-905

Released	2005-02-23
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Aeropyrum pernix
Macromolecule	XPF ENDONUCLEASE (protein)

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2BKE \| pdb_00002bke	Download File View File

Conformational Flexibility Revealed by the Crystal Structure of a Crenarchaeal RadA

Ariza, A., Richard, D.L., White, M.F., Bond, C.S.

(2005) Nucleic Acids Res 33: 1465

Released	2005-03-16
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA REPAIR AND RECOMBINATION PROTEIN RADA (protein)
Unique Ligands	CL

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2BKY \| pdb_00002bky	Download File View File

Crystal structure of the Alba1:Alba2 heterodimer from sulfolobus solfataricus

Jelinska, C., Conroy, M.J., Craven, C.J., Bullough, P.A., Waltho, J.P., Taylor, G.L., White, M.F.

(2005) Structure 13: 963

Released	2005-07-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA/RNA-BINDING PROTEIN ALBA 1 (protein) DNA/RNA-BINDING PROTEIN ALBA 2 (protein)
Unique Ligands	MPD

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2H9U \| pdb_00002h9u	Download File View File

Crystal structure of the archaea specific DNA binding protein

Kumarevel, T.S., Sakamoto, K., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-06-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Aeropyrum pernix K1
Macromolecule	DNA/RNA-binding protein Alba 2 (protein)
Unique Ligands	EDO

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2IVY \| pdb_00002ivy	Download File View File

Crystal structure of hypothetical protein sso1404 from Sulfolobus solfataricus P2

Yan, X., Carter, L.G., Dorward, M., Liu, H., McMahon, S.A., Oke, M., Powers, H., White, M.F., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2006-06-28
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	HYPOTHETICAL PROTEIN SSO1404 (protein)

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2IX2 \| pdb_00002ix2	Download File View File

Crystal structure of the heterotrimeric PCNA from Sulfolobus solfataricus

Williams, G.J., Johnson, K., McMahon, S.A., Carter, L., Oke, M., Liu, H., Taylor, G.L., White, M.F., Naismith, J.H.

(2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 944

Released	2006-10-04
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharolobus solfataricus
Macromolecule	DNA POLYMERASE SLIDING CLAMP A (protein) DNA POLYMERASE SLIDING CLAMP B (protein) DNA POLYMERASE SLIDING CLAMP C (protein)

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2JG5 \| pdb_00002jg5	Download File View File

CRYSTAL STRUCTURE OF A PUTATIVE PHOSPHOFRUCTOKINASE FROM STAPHYLOCOCCUS AUREUS

Yan, X., Carter, L.G., Johnson, K.A., Liu, H., Dorward, M., McMahon, S.A., Oke, M., Powers, H., Coote, P.J., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2007-02-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus
Macromolecule	FRUCTOSE 1-PHOSPHATE KINASE (protein)

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2JG6 \| pdb_00002jg6	Download File View File

CRYSTAL STRUCTURE OF A 3-METHYLADENINE DNA GLYCOSYLASE I FROM STAPHYLOCOCCUS AUREUS

Yan, X., Carter, L.G., Liu, H., Dorward, M., McMahon, S.A., Johnson, K.A., Oke, M., Coote, P.J., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2007-02-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Staphylococcus aureus
Macromolecule	DNA-3-METHYLADENINE GLYCOSIDASE (protein)
Unique Ligands	ZN

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2MNA \| pdb_00002mna	Download File View File

The structural basis of DNA binding by the single-stranded DNA-binding protein from Sulfolobus solfataricus

Gamsjaeger, R., Kariawasam, R., Gimenez, A.X., Touma, C.F., McIlwain, E., Bernardo, R.E., Shepherd, N.E., Ataide, S.F., Dong, A.Q., Richard, D.J., White, M.F., Cubeddu, L.

(2015) Biochem J 465: 337-346

Released	2014-12-17
Method	SOLUTION NMR
Organisms	Saccharolobus solfataricus P2
Macromolecule	Single-stranded DNA binding protein (SSB) (protein) ssDNA (nucleic acid)