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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = GGB

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Homo sapiens (7)
	synthetic construct (5)
	Mycobacterium tuberculosis H37Rv (2)
	Bos taurus (1)
	Cricetulus griseus (1)
	Cryphonectria parasitica (1)
	Parengyodontium album (1)
	Pseudomonas savastanoi pv. phaseolicola (1)
	Staphylococcus simulans (1)
	Streptomyces lavendulae subsp. lavendulae (1)

More...

Taxonomy

	Eukaryota (11)
	Bacteria (6)
	other sequences (5)

Experimental Method

X-RAY DIFFRACTION (17)

Polymer Entity Type

	Protein (17)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (5)
	2.0 - 2.5 (4)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (1)
	2010 - 2014 (4)
	2015 - 2019 (4)
	2020 - 2024 (8)

Enzyme Classification Name

	Hydrolases (8)
	Transferases (4)
	Oxidoreductases (3)
	Ligases (1)

Symmetry Type

	Asymmetric (12)
	Cyclic (4)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (7)
	All beta proteins (5)
	Alpha and beta proteins (a+b) (3)
	All alpha proteins (1)
	Artifacts (4)

AllSelected

1 to 17 of 17 Structures

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3LAP \| pdb_00003lap	Download File View File

The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-canavanine.

Cherney, L.T., Cherney, M.M., Garen, C.R., James, M.N.G., TB Structural Genomics Consortium (TBSGC)

(2010) J Mol Biology 399: 240-254

Released	2010-05-05
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Arginine repressor (protein) 5'-D(TPTPGPCPAPTPAPAPCPGPAPTPGPCPAPA)-3' (nucleic acid) 5'-D(TPTPGPCPAPTPCPGPTPTPAPTPGPCPAPA)-3' (nucleic acid)
Unique Ligands	GGB, SO4

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3U88 \| pdb_00003u88	Download File View File

Crystal structure of human menin in complex with MLL1 and LEDGF

Huang, J., Wan, B., Lei, M.

(2012) Nature 482: 542-546

Released	2012-02-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase 2A (protein) Lens epithelium-derived growth factor (protein) Menin (protein)
Unique Ligands	0BR, CHD, GGB, GLV, SO4

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4M2F \| pdb_00004m2f	Download File View File

Crystal structure of non-heme iron oxygenase OrfP in complex with Fe and L-canavanine

Chang, C.Y., Liu, Y.C., Lyu, S.Y., Wu, C.C., Li, T.L.

(2014) Angew Chem Int Ed Engl 53: 1943-1948

Released	2014-06-25
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Streptomyces lavendulae subsp. lavendulae
Macromolecule	L-arginine beta-hydroxylase (protein)
Unique Ligands	FE, GGB

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4Q2X \| pdb_00004q2x	Download File View File

Crystal structure of Arginyl-tRNA synthetase complexed with L-canavanine

Kim, H.S., Jo, C.H., Cha, S.Y., Han, A.R., Hwang, K.Y.

(2014) FEBS Lett 588: 2328-2334

Released	2014-07-23
Method	X-RAY DIFFRACTION 2.798 Å
Organisms	Homo sapiens
Macromolecule	Arginine--tRNA ligase, cytoplasmic (protein)
Unique Ligands	GGB

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4Y4G \| pdb_00004y4g	Download File View File

Endothiapepsin in complex with fragment B53

Huschmann, F.U., Linnik, J., Weiss, M.S., Mueller, U.

(2016) Acta Crystallogr F Struct Biol Commun 72: 346-355

Released	2016-02-17
Method	X-RAY DIFFRACTION 1.439 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	ACT, DMS, GGB, GOL

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5N3K \| pdb_00005n3k	Download File View File

cAMP-dependent Protein Kinase A from Cricetulus griseus in complex with fragment like molecule O-guanidino-L-homoserine

Siefker, C., Heine, A., Klebe, G.

To be published

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Cricetulus griseus
Macromolecule	cAMP-dependent protein kinase catalytic subunit alpha (protein)
Unique Ligands	DMS, GGB, MPD

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5RPD \| pdb_00005rpd	Download File View File

PanDDA analysis group deposition -- Proteinase K changed state model for fragment Frag Xtal Screen F12a

Lima, G.M.A., Talibov, V., Benz, L.S., Jagudin, E., Mueller, U.

(2021) Acta Crystallogr D Struct Biol 77: 799-808

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.02 Å
Organisms	Parengyodontium album
Macromolecule	Proteinase K (protein)
Unique Ligands	GGB, SO4

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5UTI \| pdb_00005uti	Download File View File

Crystal Structure of TGT in complex with fragment in preQ1 pocket

Hassaan, E., Heine, A., Klebe, G.

(2020) ChemMedChem 15: 324-337

Released	2018-03-07
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	DMS, GGB, PG4, PGE, ZN

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6CBA \| pdb_00006cba	Download File View File

Ethylene forming enzyme in complex with manganese, 2-oxoglutarate and canavanine

Fellner, M., Martinez, S., Hu, J., Hausinger, R.P.

(2024) Biochemistry

Released	2019-02-06
Method	X-RAY DIFFRACTION 1.13 Å
Organisms	Pseudomonas savastanoi pv. phaseolicola
Macromolecule	2-oxoglutarate-dependent ethylene/succinate-forming enzyme (protein)
Unique Ligands	AKG, GGB, MN

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6NSE \| pdb_00006nse	Download File View File

BOVINE ENDOTHELIAL NITRIC OXIDE SYNTHASE, H4B-FREE, CANAVANINE COMPLEX

Raman, C.S., Li, H., Martasek, P., Masters, B.S.S., Poulos, T.L.

To be published

Released	2002-05-29
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (NITRIC OXIDE SYNTHASE) (protein)
Unique Ligands	ACT, CAD, GGB, GOL, HEM, ZN

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6YD2 \| pdb_00006yd2	Download File View File

X-ray structure of furin in complex with the canavanine-based inhibitor 4-aminomethyl-phenylacetyl-canavanine-Tle-Arg-Amba

Dahms, S.O.

(2021) ACS Med Chem Lett 12: 426-432

Released	2021-02-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	4-aminomethyl-phenylacetyl-canavanine-Tle-Arg-Amba (protein) Furin (protein)
Unique Ligands	CA, CL, DMS, NA, PO4

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6YD3 \| pdb_00006yd3	Download File View File

X-ray structure of furin in complex with the canavanine derived inhibitor 4-guanidinomethyl-phenylacetyl-Canavanine-Tle-Arg-Amba

Dahms, S.O.

(2021) ACS Med Chem Lett 12: 426-432

Released	2021-02-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	4-guanidinomethyl-phenylacetyl-Canavanine-Tle-Arg-Amba (protein) Furin (protein)
Unique Ligands	CA, CL, DMS, NA, PO4

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6YD4 \| pdb_00006yd4	Download File View File

X-ray structure of furin in complex with the canavanine-based inhibitor 4-guanidinomethyl-phenylacetyl-Canavanine-Tle-Canavanine-Amba

Dahms, S.O.

(2021) ACS Med Chem Lett 12: 426-432

Released	2021-02-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	4-guanidinomethyl-phenylacetyl-Canavanine-Tle-Canavanine-Amba (protein) Furin (protein)
Unique Ligands	CA, CL, DMS, NA, PO4

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6YD7 \| pdb_00006yd7	Download File View File

X-ray structure of furin in complex with the canavanine-based inhibitor 4-guanidinomethyl-phenylacetyl-Arg-Tle-Canavanine-Amba

Dahms, S.O.

(2021) ACS Med Chem Lett 12: 426-432

Released	2021-02-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	4-guanidinomethyl-phenylacetyl-Arg-Tle-Canavanine-Amba (protein) Furin (protein)
Unique Ligands	CA, CL, DMS, NA, PO4

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7BNG \| pdb_00007bng	Download File View File

Complex structure of SH3b domain with L-canavanine

Malecki, P.H., Sabala, I.

To be published

Released	2021-02-17
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Staphylococcus simulans
Macromolecule	Lysostaphin (protein)
Unique Ligands	GGB, GOL, SO4

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7NLP \| pdb_00007nlp	Download File View File

Crystal structure of Mycobacterium tuberculosis ArgB in complex with L-canavanine

Mendes, V., Thomas, S.E., Cory-Wright, J., Blundell, T.L.

(2021) Comput Struct Biotechnol J 19: 3491-3506

Released	2021-06-30
Method	X-RAY DIFFRACTION 2.213 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Acetylglutamate kinase (protein)
Unique Ligands	GGB, SO4

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8OYH \| pdb_00008oyh	Download File View File

X-ray structure of furin (PCSK3) in complex with Guanidinomethyl-Phac-Can-Tle-Can-6-(aminomethyl)-3-amino-isoindol

Dahms, S.O., Brandstetter, H.

(2024) ChemMedChem 19: e202400057-e202400057

Released	2024-03-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Furin (protein) Guanidinomethyl-Phac-Can-Tle-Can-6-(aminomethyl)-3-amino-isoindol (protein)
Unique Ligands	CA, CL, DMS, NA

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3LAP | pdb_00003lap

The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-canavanine.

3U88 | pdb_00003u88

Crystal structure of human menin in complex with MLL1 and LEDGF

4M2F | pdb_00004m2f

Crystal structure of non-heme iron oxygenase OrfP in complex with Fe and L-canavanine

4Q2X | pdb_00004q2x

Crystal structure of Arginyl-tRNA synthetase complexed with L-canavanine

4Y4G | pdb_00004y4g

Endothiapepsin in complex with fragment B53

5N3K | pdb_00005n3k

cAMP-dependent Protein Kinase A from Cricetulus griseus in complex with fragment like molecule O-guanidino-L-homoserine

5RPD | pdb_00005rpd

PanDDA analysis group deposition -- Proteinase K changed state model for fragment Frag Xtal Screen F12a

5UTI | pdb_00005uti

Crystal Structure of TGT in complex with fragment in preQ1 pocket

6CBA | pdb_00006cba

Ethylene forming enzyme in complex with manganese, 2-oxoglutarate and canavanine

6NSE | pdb_00006nse

BOVINE ENDOTHELIAL NITRIC OXIDE SYNTHASE, H4B-FREE, CANAVANINE COMPLEX

6YD2 | pdb_00006yd2

X-ray structure of furin in complex with the canavanine-based inhibitor 4-aminomethyl-phenylacetyl-canavanine-Tle-Arg-Amba

6YD3 | pdb_00006yd3

X-ray structure of furin in complex with the canavanine derived inhibitor 4-guanidinomethyl-phenylacetyl-Canavanine-Tle-Arg-Amba

6YD4 | pdb_00006yd4

X-ray structure of furin in complex with the canavanine-based inhibitor 4-guanidinomethyl-phenylacetyl-Canavanine-Tle-Canavanine-Amba

6YD7 | pdb_00006yd7

X-ray structure of furin in complex with the canavanine-based inhibitor 4-guanidinomethyl-phenylacetyl-Arg-Tle-Canavanine-Amba

7BNG | pdb_00007bng

Complex structure of SH3b domain with L-canavanine

7NLP | pdb_00007nlp

Crystal structure of Mycobacterium tuberculosis ArgB in complex with L-canavanine

8OYH | pdb_00008oyh

X-ray structure of furin (PCSK3) in complex with Guanidinomethyl-Phac-Can-Tle-Can-6-(aminomethyl)-3-amino-isoindol

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3LAP | pdb_00003lap

3U88 | pdb_00003u88

4M2F | pdb_00004m2f

4Q2X | pdb_00004q2x

4Y4G | pdb_00004y4g

5N3K | pdb_00005n3k

5RPD | pdb_00005rpd

5UTI | pdb_00005uti

6CBA | pdb_00006cba

6NSE | pdb_00006nse

6YD2 | pdb_00006yd2

6YD3 | pdb_00006yd3

6YD4 | pdb_00006yd4

6YD7 | pdb_00006yd7

7BNG | pdb_00007bng

7NLP | pdb_00007nlp

8OYH | pdb_00008oyh