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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "CDCL1"

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Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Homo sapiens (26)
	synthetic construct (8)
	Saccharomyces cerevisiae (3)

Taxonomy

	Eukaryota (26)
	other sequences (8)

Experimental Method

	ELECTRON MICROSCOPY (18)
	X-RAY DIFFRACTION (8)

Polymer Entity Type

	Protein (26)
	DNA (15)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (2)
	2.5 - 3.0 (5)
	3.0 - 3.5 (7)
	3.5 - 4.0 (6)
	4.0 - 4.5 (3)
	> 4.5 (2)

Release Date

	2015 - 2019 (5)
	2020 - 2024 (19)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (26)
	Transferases (3)

Symmetry Type

	Asymmetric (20)
	Cyclic (6)

SCOP Classification

	All alpha proteins (5)
	All beta proteins (2)

AllSelected

1 to 25 of 26 Structures

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5BNV \| pdb_00005bnv	Download File View File

Crystal structure of Human MCM2 HBD chaperoning a histone H3-H4 tetramer

Huang, H., Patel, D.J.

(2015) Nat Struct Mol Biol 22: 618-626

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.795 Å
Organisms	Homo sapiens
Macromolecule	DNA replication licensing factor MCM2 (protein) Histone H3.3 (protein) Histone H4 (protein)
Unique Ligands	PO4

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5BNX \| pdb_00005bnx	Download File View File

Crystal structure of Human MCM2 HBD and ASF1b chaperoning a histone H3.3-H4 dimer

Huang, H., Patel, D.J.

(2015) Nat Struct Mol Biol 22: 618-626

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.305 Å
Organisms	Homo sapiens
Macromolecule	DNA replication licensing factor MCM2 (protein) Histone H3.3 (protein) Histone H4 (protein) Histone chaperone ASF1B (protein)
Unique Ligands	GOL

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5BO0 \| pdb_00005bo0	Download File View File

Crystal structure of Human MCM2 HBD and ASF1b chaperoning a histone H3.2-H4 dimer

Huang, H., Patel, D.J.

(2015) Nat Struct Mol Biol 22: 618-626

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.906 Å
Organisms	Homo sapiens
Macromolecule	DNA replication licensing factor MCM2 (protein) Histone H3.2 (protein) Histone H4 (protein) Histone chaperone ASF1B (protein)
Unique Ligands	GOL

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5C3I \| pdb_00005c3i	Download File View File

Crystal structure of the quaternary complex of histone H3-H4 heterodimer with chaperone ASF1 and the replicative helicase subunit MCM2

Wang, H., Wang, M., Yang, N., Xu, R.M.

(2015) Protein Cell 6: 693-697

Released	2015-07-29
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens
Macromolecule	DNA replication licensing factor MCM2,MCM2 (protein) Histone H3.1 (protein) Histone H4 (protein) Histone chaperone ASF1A (protein)

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5JA4 \| pdb_00005ja4	Download File View File

Crystal structure of human TONSL and MCM2 HBDs binding to a histone H3-H4 tetramer

Huang, H., Patel, D.

(2016) Nature 534: 714-718

Released	2016-06-15
Method	X-RAY DIFFRACTION 2.424 Å
Organisms	Homo sapiens
Macromolecule	DNA replication licensing factor MCM2 (protein) Histone H3.3 (protein) Histone H4 (protein) Tonsoku-like protein (protein)
Unique Ligands	GOL, MES

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6XTX \| pdb_00006xtx	Download File View File

CryoEM structure of human CMG bound to ATPgammaS and DNA

Rzechorzek, N.J., Pellegrini, L.

(2020) Nucleic Acids Res 48: 6980-6995

Released	2020-05-27
Method	ELECTRON MICROSCOPY 3.29 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 11 Unique nucleic acid chains: 1
Unique Ligands	ADP, AGS, MG, ZN

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6XTY \| pdb_00006xty	Download File View File

CryoEM structure of human CMG bound to AND-1 (CMGA)

Rzechorzek, N.J., Pellegrini, L., Chirgadze, D.Y., Hardwick, S.W.

(2020) Nucleic Acids Res 48: 6980-6995

Released	2020-05-27
Method	ELECTRON MICROSCOPY 6.77 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 12
Unique Ligands	ZN

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7CIZ \| pdb_00007ciz	Download File View File

Crystal structure of DNAJC9 HBD helix2 in complex with H3.3-H4 dimer and MCM2 HBD

Bao, H., Huang, H.

(2021) Mol Cell 81: 2533-2548.e9

Released	2021-04-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	DNA replication licensing factor MCM2 (protein) DnaJ homolog subfamily C member 9 (protein) Histone H3.3 (protein) Histone H4 (protein)
Unique Ligands	SO4

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7PFO \| pdb_00007pfo	Download File View File

Core human replisome

Jones, M.J., Yeeles, J.T.P.

(2021) EMBO J 40: e108819-e108819

Released	2021-11-10
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 17 Unique nucleic acid chains: 2
Unique Ligands	ANP, MG, SO4, ZN

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7PLO \| pdb_00007plo	Download File View File

H. sapiens replisome-CUL2/LRR1 complex

Jones, M.J., Yeeles, J.T.P., Deegan, T.D., Jenkyn-Bedford, M.

(2021) Nature 600: 743-747

Released	2021-11-10
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 22 Unique nucleic acid chains: 2
Unique Ligands	ANP, MG, SO4, ZN

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8B9D \| pdb_00008b9d	Download File View File

Human replisome bound by Pol Alpha

Jones, M.L., Yeeles, J.T.P.

(2023) Mol Cell 83: 2911

Released	2023-08-09
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 19 Unique nucleic acid chains: 2
Unique Ligands	ANP, MG, ZN

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8RWV \| pdb_00008rwv	Download File View File

Human OCCM DNA licensing intermediate

Wells, J.N., Leber, V., Edwards, L.V., Allyjaun, S., Peach, M., Tomkins, J., Kefala-Stavridi, A., Faull, S.V., Aramayo, R., Pestana, C.M., Ranjha, L., Speck, C.

(2025) Nat Commun 16: 478-478

Released	2025-02-05
Method	ELECTRON MICROSCOPY 6.68 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 12 Unique nucleic acid chains: 2

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8S09 \| pdb_00008s09	Download File View File

H. sapiens MCM2-7 double hexamer bound to double stranded DNA

Greiwe, J.F., Weissmann, F., Diffley, J.F.X., Costa, A.

(2024) Nature 636: 499-508

Released	2024-10-02
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	ADP, ATP, MG, ZN

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8S0A \| pdb_00008s0a	Download File View File

H. sapiens MCM2-7 hexamer bound to double stranded DNA

Greiwe, J.F., Weissmann, F., Diffley, J.F.X., Costa, A.

(2024) Nature 636: 499-508

Released	2024-10-02
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	ADP, ATP, MG, ZN

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8S0B \| pdb_00008s0b	Download File View File

H. sapiens MCM bound to double stranded DNA and ORC6 as part of the MCM-ORC complex

Greiwe, J.F., Weissmann, F., Diffley, J.F.X., Costa, A.

(2024) Nature 636: 499-508

Released	2024-10-02
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 7 Unique nucleic acid chains: 2
Unique Ligands	ADP, AGS, MG, ZN

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8S0D \| pdb_00008s0d	Download File View File

H. sapiens MCM bound to double stranded DNA and ORC1-6

Greiwe, J.F., Weissmann, F., Diffley, J.F.X., Costa, A.

(2024) Nature 636: 499-508

Released	2024-10-02
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 12 Unique nucleic acid chains: 2
Unique Ligands	ADP, AGS, MG, ZN

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8S0E \| pdb_00008s0e	Download File View File

H. sapiens OCCM bound to double stranded DNA

Greiwe, J.F., Weissmann, F., Diffley, J.F.X., Costa, A.

(2024) Nature 636: 499-508

Released	2024-10-02
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 13 Unique nucleic acid chains: 2
Unique Ligands	AGS, MG, ZN

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8S0F \| pdb_00008s0f	Download File View File

H. sapiens OC1M bound to double stranded DNA

Greiwe, J.F., Weissmann, F., Diffley, J.F.X., Costa, A.

(2024) Nature 636: 499-508

Released	2024-10-02
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 12 Unique nucleic acid chains: 2
Unique Ligands	AGS, MG, ZN

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8W0E \| pdb_00008w0e	Download File View File

Cryo-EM structure of a human MCM2-7 single hexamer on dsDNA

Hunker, O., Yang, R., Bleichert, F.

(2024) Nature 636: 488-498

Released	2024-10-02
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	ADP, ATP, MG, ZN

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8W0F \| pdb_00008w0f	Download File View File

Cryo-EM structure of a human MCM2-7 double hexamer on dsDNA

Hunker, O., Yang, R., Bleichert, F.

(2024) Nature 636: 488-498

Released	2024-10-02
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	ADP, ATP, MG, ZN

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8W0G \| pdb_00008w0g	Download File View File

Cryo-EM structure of a human MCM2-7 dimer

Yang, R., Hunker, O., Bleichert, F.

(2024) Nature 636: 488-498

Released	2024-10-02
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	ADP, ATP, MG, ZN

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8W0I \| pdb_00008w0i	Download File View File

Cryo-EM structure of the human MCM2-7 heterohexamer

Yang, R., Hunker, O., Bleichert, F.

(2024) Nature 636: 488-498

Released	2024-10-02
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	ADP, ATP, MG, ZN

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8YJF \| pdb_00008yjf	Download File View File

Structure of human SPT16 MD-CTD and MCM2 HBD chaperoning a histone H3-H4 tetramer and an H2A-H2B dimer

Gan, S.L., Yang, W.S., Xu, R.M.

(2024) Sci China Life Sci 67: 1305-1307

Released	2024-03-20
Method	X-RAY DIFFRACTION 4.4 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6

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8YJM \| pdb_00008yjm	Download File View File

Structure of human SPT16 MD-CTD and MCM2 HBD chaperoning a histone H3-H4 tetramer and a single chain H2B-H2A chimera

Gan, S.L., Yang, W.S., Xu, R.M.

(2024) Sci China Life Sci 67: 1305-1307

Released	2024-03-20
Method	X-RAY DIFFRACTION 4.15 Å
Organisms	Homo sapiens
Macromolecule	DNA replication licensing factor MCM2 (protein) FACT complex subunit SPT16 (protein) Histone H2B 1/2/3/4/6,Histone H2A type 1-D (protein) Histone H3.1 (protein) Histone H4 (protein)

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9CAQ \| pdb_00009caq	Download File View File

Cryo-EM structure of a human MCM2-7 double hexamer formed from independently loaded MCM2-7 single hexamers

Yang, R., Hunker, O., Bleichert, F.

(2024) Nature 636: 488-498

Released	2024-10-02
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	ADP, ATP, MG, ZN

1 to 25 of 26 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5BNV | pdb_00005bnv

5BNX | pdb_00005bnx

5BO0 | pdb_00005bo0

5C3I | pdb_00005c3i

5JA4 | pdb_00005ja4

6XTX | pdb_00006xtx

6XTY | pdb_00006xty

7CIZ | pdb_00007ciz

7PFO | pdb_00007pfo

7PLO | pdb_00007plo

8B9D | pdb_00008b9d

8RWV | pdb_00008rwv

8S09 | pdb_00008s09

8S0A | pdb_00008s0a

8S0B | pdb_00008s0b

8S0D | pdb_00008s0d

8S0E | pdb_00008s0e

8S0F | pdb_00008s0f

8W0E | pdb_00008w0e

8W0F | pdb_00008w0f

8W0G | pdb_00008w0g

8W0I | pdb_00008w0i

8YJF | pdb_00008yjf

8YJM | pdb_00008yjm

9CAQ | pdb_00009caq