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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "HHT2"

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Search Summary

This query matches 30 Structures.

Refinements

Structure Determination Methodology

experimental (30)

Scientific Name of Source Organism

	Saccharomyces cerevisiae S288C (14)
	Saccharomyces cerevisiae (11)
	Escherichia coli K-12 (5)
	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (5)
	synthetic construct (5)
	Aspergillus fumigatus Af293 (3)
	Octocorallia (3)
	Schistosoma japonicum (3)
	Tetrahymena thermophila (3)
	Escherichia coli (2)

More...

Taxonomy

	Eukaryota (29)
	Bacteria (8)
	Eukaryota (eukaryotes) (7)
	other sequences (5)

Experimental Method

	ELECTRON MICROSCOPY (17)
	X-RAY DIFFRACTION (12)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (30)
	DNA (17)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (5)
	2.5 - 3.0 (2)
	3.0 - 3.5 (3)
	3.5 - 4.0 (8)
	4.0 - 4.5 (6)
	> 4.5 (3)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (5)
	2010 - 2014 (2)
	2015 - 2019 (4)
	2020 - 2024 (10)
	2025 - 2029 (6)

Enzyme Classification Name

	Hydrolases (6)
	Transferases (13)

Symmetry Type

	Asymmetric (27)
	Cyclic (3)

SCOP Classification

	All alpha proteins (1)
	All beta proteins (3)
	Alpha and beta proteins (a+b) (3)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)

AllSelected

1 to 25 of 30 Structures

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1M1D \| pdb_00001m1d	Download File View File

TETRAHYMENA GCN5 WITH BOUND BISUBSTRATE ANALOG INHIBITOR

Poux, A.N., Cebrat, M., Kim, C.M., Cole, P.A., Marmorstein, R.

(2002) Proc Natl Acad Sci U S A 99: 14065-14070

Released	2002-10-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) Tetrahymena thermophila
Macromolecule	HISTONE H3 (protein) TGCN5 HISTONE ACETYL TRANSFERASE (protein)

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1PU9 \| pdb_00001pu9	Download File View File

Crystal Structure of Tetrahymena GCN5 with Bound Coenzyme A and a 19-residue Histone H3 Peptide

Clements, A., Poux, A.N., Lo, W.S., Pillus, L., Berger, S.L., Marmorstein, R.

(2003) Mol Cell 12: 461-473

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) Tetrahymena thermophila
Macromolecule	HAT A1 (protein) Histone H3 (protein)
Unique Ligands	COA

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1PUA \| pdb_00001pua	Download File View File

Crystal Structure of Tetrahymena GCN5 with Bound Coenzyme A and a Phosphorylated, 19-residue Histone H3 peptide

Clements, A., Poux, A.N., Lo, W.S., Pillus, L., Berger, S.L., Marmorstein, R.

(2003) Mol Cell 12: 461-473

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) Tetrahymena thermophila
Macromolecule	HAT A1 (protein) Histone H3 (protein)
Unique Ligands	COA

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2DZE \| pdb_00002dze	Download File View File

Crystal structure of histone chaperone Asf1 in complex with a C-terminus of histone H3

Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Schizosaccharomyces pombe Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Macromolecule	10-mer peptide from Histone H3.1/H3.2 (protein) Histone chaperone cia1 (protein)
Unique Ligands	PGE

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2H2G \| pdb_00002h2g	Download File View File

The Structural Basis of Sirtuin substrate affinity

Cosgrove, M.S., Wolberger, C.

(2006) Biochemistry 45: 7511-7521

Released	2006-11-28
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) Thermotoga maritima
Macromolecule	HISTONE H3 PEPTIDE (protein) NAD-dependent deacetylase (protein)
Unique Ligands	ZN

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2IDC \| pdb_00002idc	Download File View File

Structure of the Histone H3-Asf1 Chaperone Interaction

Antczak, A.J., Tsubota, T., Kaufman, P.D., Berger, J.M.

(2006) BMC Struct Biol 6: 26-26

Released	2007-01-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	ANTI-SILENCING PROTEIN 1 AND HISTONE H3 CHIMERA (protein)

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2JMJ \| pdb_00002jmj	Download File View File

NMR solution structure of the PHD domain from the yeast YNG1 protein in complex with H3(1-9)K4me3 peptide

Ilin, S., Taverna, S.D., Rogers, R.S., Tanny, J.C., Lavender, H., Li, H., Baker, L., Boyle, J., Blair, L.P., Chait, B.T., Patel, D.J., Aitchison, J.D., Tackett, A.J., Allis, C.D.

(2006) Mol Cell 24: 785-796

Released	2007-07-03
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	Histone H3 (protein) Protein YNG1 (protein)
Unique Ligands	ZN

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3G7L \| pdb_00003g7l	Download File View File

Chromodomain of Chp1 in complex with Histone H3K9me3 peptide

Schalch, T., Joshua-Tor, L.

(2009) Mol Cell 34: 36-46

Released	2009-04-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Schizosaccharomyces pombe Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Macromolecule	Chromo domain-containing protein 1 (protein) Histone H3.1/H3.2 (protein)
Unique Ligands	ACY, ZN

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4JJN \| pdb_00004jjn	Download File View File

Crystal structure of heterochromatin protein Sir3 in complex with a silenced yeast nucleosome

Wang, F., Li, G., Mohammed, A., Lu, C., Currie, M., Johnson, A., Moazed, D.

(2013) Proc Natl Acad Sci U S A 110: 8495-8500

Released	2013-05-15
Method	X-RAY DIFFRACTION 3.09 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2

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4KUD \| pdb_00004kud	Download File View File

Crystal structure of N-terminal acetylated Sir3 BAH domain D205N mutant in complex with yeast nucleosome core particle

Yang, D., Fang, Q., Wang, M., Ren, R., Wang, H., He, M., Sun, Y., Yang, N., Xu, R.M.

(2013) Nat Struct Mol Biol 20: 1116-1118

Released	2013-08-07
Method	X-RAY DIFFRACTION 3.203 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 1

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5ZBA \| pdb_00005zba	Download File View File

Crystal structure of Rtt109-Asf1-H3-H4-CoA complex

Zhang, L., Serra-Cardona, A., Zhou, H., Wang, M., Yang, N., Zhang, Z., Xu, R.M.

(2018) Cell 174: 818-830.e11

Released	2018-07-25
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Aspergillus fumigatus Af293 Saccharomyces cerevisiae S288C
Macromolecule	DNA damage response protein Rtt109, putative (protein) Histone H3 (protein) Histone H4 (protein) Histone chaperone asf1 (protein)
Unique Ligands	COA, IOD

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5ZBB \| pdb_00005zbb	Download File View File

Crystal structure of Rtt109-Asf1-H3-H4 complex

Zhang, L., Serra-Cardona, A., Zhou, H., Wang, M., Yang, N., Zhang, Z., Xu, R.M.

(2018) Cell 174: 818-830.e11

Released	2018-07-25
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Aspergillus fumigatus Af293 Saccharomyces cerevisiae S288C
Macromolecule	DNA damage response protein Rtt109, putative (protein) Histone H3 (protein) Histone H4 (protein) Histone chaperone asf1 (protein)
Unique Ligands	GOL, IOD, PEG

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6GEJ \| pdb_00006gej	Download File View File

Chromatin remodeller-nucleosome complex at 3.6 A resolution.

Willhoft, O., Chua, E.Y.D., Wilkinson, M., Wigley, D.B.

(2018) Science 362:

Released	2018-10-17
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	ADP, BEF, MG, ZN

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6GEN \| pdb_00006gen	Download File View File

Chromatin remodeller-nucleosome complex at 4.5 A resolution.

Willhoft, O., Chua, E.Y.D., Wilkinson, M., Wigley, D.B.

(2018) Science 362:

Released	2018-10-17
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	ADP, BEF, MG, ZN

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7E9C \| pdb_00007e9c	Download File View File

Cryo-EM structure of the 1:1 Orc1 BAH domain in complex with nucleosome

Jiang, H., Yu, C., Liu, C.P., Han, X., Yu, Z., Xu, R.M.

To be published

Released	2022-09-07
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Escherichia coli Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2

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7E9F \| pdb_00007e9f	Download File View File

Cryo-EM structure of the 2:1 Orc1 BAH domain in complex with nucleosome

Jiang, H., Yu, C., Liu, C.P., Han, X., Yu, Z., Xu, R.M.

To be published

Released	2022-09-07
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Escherichia coli Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2

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7K7G \| pdb_00007k7g	Download File View File

nucleosome and Gal4 complex

Ruifang, G., Yawen, B.

(2021) Nat Commun 12: 1763-1763

Released	2021-03-31
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2
Unique Ligands	ZN

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7XAY \| pdb_00007xay	Download File View File

Crystal structure of Hat1-Hat2-Asf1-H3-H4

Yue, Y., Yang, W.S., Xu, R.M.

(2022) Genes Dev 36: 408-413

Released	2022-05-18
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Aspergillus fumigatus Af293 Saccharomyces cerevisiae S288C
Macromolecule	Histone H3 (protein) Histone H4 (protein) Histone acetyltransferase type B subunit 2 (protein) Histone chaperone asf1 (protein) Soluble cytochrome b562,Histone acetyltransferase type B catalytic subunit (protein)
Unique Ligands	COA

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7Z0O \| pdb_00007z0o	Download File View File

Structure of transcription factor UAF in complex with TBP and 35S rRNA promoter DNA

Baudin, F., Murciano, B., Fung, H.K.H., Fromm, S.A., Mueller, C.W.

(2022) Sci Adv 8: eabn5725-eabn5725

Released	2022-04-27
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 7 Unique nucleic acid chains: 2

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8GHM \| pdb_00008ghm	Download File View File

Hir1 WD40 domains and Asf1/H3/H4

Kim, H.J., Murakami, K.

(2024) Mol Cell 84: 2601-2617.e12

Released	2024-07-10
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 6

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8GHN \| pdb_00008ghn	Download File View File

Composite model of the yeast Hir Complex with Asf1/H3/H4

Kim, H.J., Murakami, K.

(2024) Mol Cell 84: 2601-2617.e12

Released	2024-07-17
Method	ELECTRON MICROSCOPY 2.96 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 7

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8QKU \| pdb_00008qku	Download File View File

SWR1-nucleosome complex in configuration 1

Jalal, A.S.B., Wigley, D.B.

(2024) Nature 636: 251-257

Released	2024-10-02
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	ADP, BEF, MG, ZN

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8QKV \| pdb_00008qkv	Download File View File

SWR1-nucleosome complex in configuration 2

Jalal, A.S.B., Wigley, D.B.

(2024) Nature 636: 251-257

Released	2024-10-02
Method	ELECTRON MICROSCOPY 4.7 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	ADP, BEF, MG, ZN

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8X2X \| pdb_00008x2x	Download File View File

The piccolo NuA4 bound to the H2A.Z nucleosome complex at pre-H4-acetylation state

Wang, L., Zhang, H., Zhu, H., Zhu, P.

(2025) Proc Natl Acad Sci U S A

Released	2025-03-19
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Escherichia coli K-12 Octocorallia Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 8 Unique nucleic acid chains: 1

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8X2Y \| pdb_00008x2y	Download File View File

The class1 of piccolo NuA4 bound to the H2A.Z nucleosome complex at harboring state

Wang, L., Zhang, H., Zhu, H., Zhu, P.

(2025) Proc Natl Acad Sci U S A

Released	2025-03-19
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Escherichia coli K-12 Saccharomyces cerevisiae Schistosoma japonicum
Macromolecule	Unique protein chains: 8 Unique nucleic acid chains: 1

1 to 25 of 30 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1M1D | pdb_00001m1d

1PU9 | pdb_00001pu9

1PUA | pdb_00001pua

2DZE | pdb_00002dze

2H2G | pdb_00002h2g

2IDC | pdb_00002idc

2JMJ | pdb_00002jmj

3G7L | pdb_00003g7l

4JJN | pdb_00004jjn

4KUD | pdb_00004kud

5ZBA | pdb_00005zba

5ZBB | pdb_00005zbb

6GEJ | pdb_00006gej

6GEN | pdb_00006gen

7E9C | pdb_00007e9c

7E9F | pdb_00007e9f

7K7G | pdb_00007k7g

7XAY | pdb_00007xay

7Z0O | pdb_00007z0o

8GHM | pdb_00008ghm

8GHN | pdb_00008ghn

8QKU | pdb_00008qku

8QKV | pdb_00008qkv

8X2X | pdb_00008x2x

8X2Y | pdb_00008x2y