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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "PPIF"

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Search Summary

This query matches 66 Structures.

Refinements

Structure Determination Methodology

experimental (66)

Scientific Name of Source Organism

	Homo sapiens (65)
	Rattus norvegicus (1)
	Tolypocladium inflatum (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (66)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (66)

Polymer Entity Type

Protein (66)

Refinement Resolution (Å)

	0.5 - 1.0 (7)
	1.0 - 1.5 (32)
	1.5 - 2.0 (21)
	2.0 - 2.5 (6)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (26)
	2015 - 2019 (17)
	2020 - 2024 (22)

Enzyme Classification Name

Isomerases (66)

Symmetry Type

Asymmetric (66)

SCOP Classification

All beta proteins (45)

AllSelected

1 to 25 of 66 Structures

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2Z6W \| pdb_00002z6w	Download File View File

Crystal structure of human cyclophilin D in complex with cyclosporin A

Kajitani, K., Fujihashi, M., Kobayashi, Y., Shimizu, S., Tsujimoto, Y., Miki, K.

(2008) Proteins 70: 1635

Released	2008-04-29
Method	X-RAY DIFFRACTION 0.96 Å
Organisms	Homo sapiens Tolypocladium inflatum
Macromolecule	CYCLOSPORIN A (protein) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (protein)
Unique Ligands	CIT

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3QYU \| pdb_00003qyu	Download File View File

Crystal structure of human cyclophilin D at 1.54 A resolution at room temperature

Colliandre, L., Gelin, M., Labesse, G., Guichou, J.-F.

(2011) Acta Crystallogr D Biol Crystallogr 67: 747-755

Released	2011-08-24
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F (protein)

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3R49 \| pdb_00003r49	Download File View File

Human cyclophilin D complexed with quinolin-8-amine

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	Q8A

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3R4G \| pdb_00003r4g	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	4SO, GOL

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3R54 \| pdb_00003r54	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	FP6

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3R56 \| pdb_00003r56	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	6AI, P33

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3R57 \| pdb_00003r57	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	GOL, N3M, NA

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3R59 \| pdb_00003r59	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	3AO

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3RCF \| pdb_00003rcf	Download File View File

Human cyclophilin D complexed with N-[(4-aminophenyl)sulfonyl]benzamide

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	BS4

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3RCG \| pdb_00003rcg	Download File View File

Human cyclophilin D complexed with dimethylformamide

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 0.97 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	CL, DMF

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3RCI \| pdb_00003rci	Download File View File

Human cyclophilin D complexed with 5-methyl-1,2-oxazol-3-amine

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	M3I

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3RCK \| pdb_00003rck	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.26 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	1FP

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3RCL \| pdb_00003rcl	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	5AO, P4C

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3RD9 \| pdb_00003rd9	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	MSY, PEG

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3RDA \| pdb_00003rda	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.07 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	MIO

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3RDB \| pdb_00003rdb	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	5MZ, P4C

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3RDC \| pdb_00003rdc	Download File View File

Human Cyclophilin D Complexed with an Inhibitor

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2015) Acta Crystallogr D Biol Crystallogr 71: 1777-1787

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	EA4

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4J58 \| pdb_00004j58	Download File View File

Human Cyclophilin D Complexed with an Inhibitor

Colliandre, L., Gelin, M., Bessin, Y., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.28 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	53Z, PO4

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4J59 \| pdb_00004j59	Download File View File

Human Cyclophilin D Complexed with an Inhibitor

Gelin, M., Colliandre, L., Bessin, Y., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	671

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4J5A \| pdb_00004j5a	Download File View File

Human Cyclophilin D Complexed with an Inhibitor

Gelin, M., Colliandre, L., Bessin, Y., Guichou, J.F.

To be published

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	67Z, DMS

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4J5B \| pdb_00004j5b	Download File View File

Human Cyclophilin D Complexed with an Inhibitor

Gelin, M., Colliandre, L., Bessin, Y., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	6B4

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4J5C \| pdb_00004j5c	Download File View File

Human Cyclophilin D Complexed with an Inhibitor

Gelin, M., Colliandre, L., Bessin, Y., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.03 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	7I6

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4J5D \| pdb_00004j5d	Download File View File

Human Cyclophilin D Complexed with an Inhibitor

Gelin, M., Colliandre, L., Bessin, Y., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	728

Explore in 3D

4J5E \| pdb_00004j5e	Download File View File

Human Cyclophilin D Complexed with an Inhibitor

Gelin, M., Colliandre, L., Bessin, Y., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2014-02-19
Method	X-RAY DIFFRACTION 0.99 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	7B7

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4O8H \| pdb_00004o8h	Download File View File

0.85A resolution structure of PEG 400 Bound Cyclophilin D

Lovell, S., Valasani, K.R., Battaile, K.P., Wang, C., Yan, S.S.

(2014) Acta Crystallogr Sect F Struct Biol Cryst Commun 70: 717-722

Released	2014-06-11
Method	X-RAY DIFFRACTION 0.85 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	1PE, PEG

1 to 25 of 66 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2Z6W | pdb_00002z6w

3QYU | pdb_00003qyu

3R49 | pdb_00003r49

3R4G | pdb_00003r4g

3R54 | pdb_00003r54

3R56 | pdb_00003r56

3R57 | pdb_00003r57

3R59 | pdb_00003r59

3RCF | pdb_00003rcf

3RCG | pdb_00003rcg

3RCI | pdb_00003rci

3RCK | pdb_00003rck

3RCL | pdb_00003rcl

3RD9 | pdb_00003rd9

3RDA | pdb_00003rda

3RDB | pdb_00003rdb

3RDC | pdb_00003rdc

4J58 | pdb_00004j58

4J59 | pdb_00004j59

4J5A | pdb_00004j5a

4J5B | pdb_00004j5b

4J5C | pdb_00004j5c

4J5D | pdb_00004j5d

4J5E | pdb_00004j5e

4O8H | pdb_00004o8h