RCSB PDB: Search

2YYN \| pdb_00002yyn	Download File View File

Crystal structure of human bromodomain protein

Kishishita, S., Uchikubo-Kamo, T., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-05-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Transcription intermediary factor 1-alpha (protein)

Explore in 3D

3O33 \| pdb_00003o33	Download File View File

Crystal structure of TRIM24 PHD-Bromo in the free state

Wang, Z., Patel, D.J.

(2010) Nature 468: 927-932

Released	2010-12-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Transcription intermediary factor 1-alpha (protein)
Unique Ligands	ZN

Explore in 3D

3O34 \| pdb_00003o34	Download File View File

Crystal structure of TRIM24 PHD-Bromo complexed with H3(13-32)K23ac peptide

Wang, Z., Patel, D.J.

(2010) Nature 468: 927-932

Released	2010-12-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Histone H3.1 (protein) Transcription intermediary factor 1-alpha (protein)
Unique Ligands	BTN, ZN

Explore in 3D

3O35 \| pdb_00003o35	Download File View File

Crystal structure of TRIM24 PHD-Bromo complexed with H3(23-31)K27ac peptide

Wang, Z., Patel, D.J.

(2010) Nature 468: 927-932

Released	2010-12-15
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	Histone H3.1 (protein) Transcription intermediary factor 1-alpha (protein)
Unique Ligands	ZN

Explore in 3D

3O36 \| pdb_00003o36	Download File View File

Crystal structure of TRIM24 PHD-Bromo complexed with H4(14-19)K16ac peptide

Wang, Z., Patel, D.J.

(2010) Nature 468: 927-932

Released	2010-12-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Histone H4 (protein) Transcription intermediary factor 1-alpha (protein)
Unique Ligands	ZN

Explore in 3D

3O37 \| pdb_00003o37	Download File View File

Crystal structure of TRIM24 PHD-Bromo complexed with H3(1-10)K4 peptide

Wang, Z., Patel, D.J.

(2010) Nature 468: 927-932

Released	2010-12-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Histone H3.1 (protein) Transcription intermediary factor 1-alpha (protein)
Unique Ligands	ZN

Explore in 3D

4YAB \| pdb_00004yab	Download File View File

Crystal structure of TRIM24 PHD-bromodomain complexed with 1-methyl-5-(2-methyl-1 3-thiazol-4-yl)-2 3-dihydro-1H-indol-2-one (1)

Poncet-Montange, G., Palmer, W., Jones, P.

(2016) J Med Chem 59: 1440-1454

Released	2015-06-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Transcription intermediary factor 1-alpha (protein)
Unique Ligands	4CN, SO4, ZN

Explore in 3D

4YAD \| pdb_00004yad	Download File View File

Crystal structure of TRIM24 PHD-bromodomain complexed with 2,4-dimethoxy-N-(1-methyl-2-oxo-1,2,3,4-tetrahydroquinolin-6-yl)benzene-1-sulfonamide (3b)

Poncet-Montange, G., Palmer, W., Jones, P.

(2016) J Med Chem 59: 1440-1454

Released	2015-06-24
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Homo sapiens
Macromolecule	Transcription intermediary factor 1-alpha (protein)
Unique Ligands	4A7, CL, GOL, ZN

Explore in 3D

4YAT \| pdb_00004yat	Download File View File

Crystal structure of TRIM24 PHD-bromodomain complexed with N-(1,3-dimethyl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl)-4-methoxybenzene-1-sulfonamide (5b)

Poncet-Montange, G., Palmer, W., Jones, P.

(2016) J Med Chem 59: 1440-1454

Released	2015-06-24
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Homo sapiens
Macromolecule	Transcription intermediary factor 1-alpha (protein)
Unique Ligands	4A8, ZN

Explore in 3D

4YAX \| pdb_00004yax	Download File View File

Crystal structure of TRIM24 PHD-bromodomain complexed with N-[6-(4-methoxyphenoxy)-1,3-dimethyl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl]benzenesulfonamide (5g)

Poncet-Montange, G., Palmer, W., Jones, P.

(2016) J Med Chem 59: 1440-1454

Released	2015-06-24
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Transcription intermediary factor 1-alpha (protein)
Unique Ligands	4AE, GOL, SO4, ZN

Explore in 3D

4YBM \| pdb_00004ybm	Download File View File

Crystal structure of TRIM24 PHD-bromodomain complexed with N-{6-[3-(benzyloxy)phenoxy]-1,3-dimethyl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl}-3,4-dimethoxybenzene-1-sulfonamide (7b)

Poncet-Montange, G., Palmer, W., Jones, P.

(2016) J Med Chem 59: 1440-1454

Released	2015-06-24
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Homo sapiens
Macromolecule	Transcription intermediary factor 1-alpha (protein)
Unique Ligands	4BJ, GOL, SO4, ZN

Explore in 3D

4YBS \| pdb_00004ybs	Download File View File

Crystal structure of TRIM24 PHD-bromodomain complexed with N-{1,3-dimethyl-6-[3-(2-methylpropoxy)phenoxy]-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl}-1,2-dimethyl-1H-imidazole-4-sulfonamide (7g)

Poncet-Montange, G., Palmer, W., Jones, P.

(2016) J Med Chem 59: 1440-1454

Released	2015-06-24
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	Transcription intermediary factor 1-alpha (protein)
Unique Ligands	4BK, DMS, ZN

Explore in 3D

4YBT \| pdb_00004ybt	Download File View File

Crystal structure of TRIM24 PHD-bromodomain complexed with N-{1,3-dimethyl-2-oxo-6-[3-(oxolan-3-ylmethoxy)phenoxy]-2,3-dihydro-1H-1,3-benzodiazol-5-yl}-1-methyl-1H-imidazole-4-sulfonamide (7l)

Poncet-Montange, G., Palmer, W., Jones, P.

(2016) J Med Chem 59: 1440-1454

Released	2015-06-24
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	Transcription intermediary factor 1-alpha (protein)
Unique Ligands	4BV, DMS, ZN

Explore in 3D

4YC9 \| pdb_00004yc9	Download File View File

Crystal structure of TRIM24 PHD-bromodomain complexed with N-(6-{3-[4-(dimethylamino)butoxy]-5-propoxyphenoxy}-1,3-dimethyl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl)-3,4-dimethoxybenzene-1-sulfonamide (8i)

Poncet-Montange, G., Palmer, W., Jones, P.

(2016) J Med Chem 59: 1440-1454

Released	2015-06-24
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	Transcription intermediary factor 1-alpha (protein)
Unique Ligands	4C1, GOL, ZN

Explore in 3D

4ZQL \| pdb_00004zql	Download File View File

Crystal structure of TRIM24 with 3,4-dimethoxy-N-(6-(4-methoxyphenoxy)-1,3-dimethyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-5-yl)benzenesulfonamide inhibitor

Tallant, C., Structural Genomics Consortium (SGC), Clark, P.G.K., Vieira, L.C.C., Krojer, T., Nunez-Alonso, G., Picaud, S., Fedorov, O., Dixon, D.J., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Brennan, P.E., Knapp, S.

To be published

Released	2015-06-17
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Homo sapiens
Macromolecule	Transcription intermediary factor 1-alpha (protein)
Unique Ligands	1PE, 4QH, DMS, SO4, ZN

Explore in 3D

5H1T \| pdb_00005h1t	Download File View File

Complex structure of TRIM24 PHD-bromodomain and inhibitor 1

Liu, J.

(2017) FEBS J 284: 1082-1095

Released	2017-02-22
Method	X-RAY DIFFRACTION 1.951 Å
Organisms	Homo sapiens
Macromolecule	Transcription intermediary factor 1-alpha (protein)
Unique Ligands	7FF, DMS, ZN

Explore in 3D

5H1U \| pdb_00005h1u	Download File View File

Complex structure of TRIM24 PHD-bromodomain and inhibitor 2

Liu, J.

(2017) FEBS J 284: 1082-1095

Released	2017-02-22
Method	X-RAY DIFFRACTION 1.901 Å
Organisms	Homo sapiens
Macromolecule	Transcription intermediary factor 1-alpha (protein)
Unique Ligands	6KT, DMS, ZN

Explore in 3D

5H1V \| pdb_00005h1v	Download File View File

Complex structure of TRIM24 PHD-bromodomain and inhibitor 6

Liu, J.

(2017) FEBS J 284: 1082-1095

Released	2017-02-22
Method	X-RAY DIFFRACTION 2.002 Å
Organisms	Homo sapiens
Macromolecule	Transcription intermediary factor 1-alpha (protein)
Unique Ligands	7FU, DMS, ZN

Explore in 3D

7B9X \| pdb_00007b9x	Download File View File

NMR2 structure of TRIM24-BD in complex with a precursor of IACS-9571

Orts, J., Torres, F., Milbradt, A.G., Walser, R.

(2022) J Med Chem 65: 5565-5574

Released	2022-01-12
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Transcription intermediary factor 1-alpha (protein)
Unique Ligands	T52

2YYN | pdb_00002yyn

Crystal structure of human bromodomain protein

3O33 | pdb_00003o33

Crystal structure of TRIM24 PHD-Bromo in the free state

3O34 | pdb_00003o34

Crystal structure of TRIM24 PHD-Bromo complexed with H3(13-32)K23ac peptide

3O35 | pdb_00003o35

Crystal structure of TRIM24 PHD-Bromo complexed with H3(23-31)K27ac peptide

3O36 | pdb_00003o36

Crystal structure of TRIM24 PHD-Bromo complexed with H4(14-19)K16ac peptide

3O37 | pdb_00003o37

Crystal structure of TRIM24 PHD-Bromo complexed with H3(1-10)K4 peptide

4YAB | pdb_00004yab

Crystal structure of TRIM24 PHD-bromodomain complexed with 1-methyl-5-(2-methyl-1 3-thiazol-4-yl)-2 3-dihydro-1H-indol-2-one (1)

4YAD | pdb_00004yad

Crystal structure of TRIM24 PHD-bromodomain complexed with 2,4-dimethoxy-N-(1-methyl-2-oxo-1,2,3,4-tetrahydroquinolin-6-yl)benzene-1-sulfonamide (3b)

4YAT | pdb_00004yat

Crystal structure of TRIM24 PHD-bromodomain complexed with N-(1,3-dimethyl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl)-4-methoxybenzene-1-sulfonamide (5b)

4YAX | pdb_00004yax

Crystal structure of TRIM24 PHD-bromodomain complexed with N-[6-(4-methoxyphenoxy)-1,3-dimethyl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl]benzenesulfonamide (5g)

4YBM | pdb_00004ybm

Crystal structure of TRIM24 PHD-bromodomain complexed with N-{6-[3-(benzyloxy)phenoxy]-1,3-dimethyl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl}-3,4-dimethoxybenzene-1-sulfonamide (7b)

4YBS | pdb_00004ybs

Crystal structure of TRIM24 PHD-bromodomain complexed with N-{1,3-dimethyl-6-[3-(2-methylpropoxy)phenoxy]-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl}-1,2-dimethyl-1H-imidazole-4-sulfonamide (7g)

4YBT | pdb_00004ybt

Crystal structure of TRIM24 PHD-bromodomain complexed with N-{1,3-dimethyl-2-oxo-6-[3-(oxolan-3-ylmethoxy)phenoxy]-2,3-dihydro-1H-1,3-benzodiazol-5-yl}-1-methyl-1H-imidazole-4-sulfonamide (7l)

4YC9 | pdb_00004yc9

Crystal structure of TRIM24 PHD-bromodomain complexed with N-(6-{3-[4-(dimethylamino)butoxy]-5-propoxyphenoxy}-1,3-dimethyl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl)-3,4-dimethoxybenzene-1-sulfonamide (8i)

4ZQL | pdb_00004zql

Crystal structure of TRIM24 with 3,4-dimethoxy-N-(6-(4-methoxyphenoxy)-1,3-dimethyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-5-yl)benzenesulfonamide inhibitor

5H1T | pdb_00005h1t

Complex structure of TRIM24 PHD-bromodomain and inhibitor 1

5H1U | pdb_00005h1u

Complex structure of TRIM24 PHD-bromodomain and inhibitor 2

5H1V | pdb_00005h1v

Complex structure of TRIM24 PHD-bromodomain and inhibitor 6

7B9X | pdb_00007b9x

NMR2 structure of TRIM24-BD in complex with a precursor of IACS-9571

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2YYN | pdb_00002yyn

3O33 | pdb_00003o33

3O34 | pdb_00003o34

3O35 | pdb_00003o35

3O36 | pdb_00003o36

3O37 | pdb_00003o37

4YAB | pdb_00004yab

4YAD | pdb_00004yad

4YAT | pdb_00004yat

4YAX | pdb_00004yax

4YBM | pdb_00004ybm

4YBS | pdb_00004ybs

4YBT | pdb_00004ybt

4YC9 | pdb_00004yc9

4ZQL | pdb_00004zql

5H1T | pdb_00005h1t

5H1U | pdb_00005h1u

5H1V | pdb_00005h1v

7B9X | pdb_00007b9x