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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Space Group = "P 4 2 2"

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Search Summary

This query matches 89 Structures.

Refinements

Structure Determination Methodology

experimental (89)

Scientific Name of Source Organism

	Homo sapiens (31)
	Escherichia coli (5)
	Ovis aries (5)
	Bacillus subtilis (4)
	Gallus gallus (4)
	Saccharomyces cerevisiae (4)
	Escherichia coli K-12 (3)
	synthetic construct (3)
	Agrobacterium fabrum str. C58 (2)
	Brucella melitensis (2)

More...

Taxonomy

	Eukaryota (52)
	Bacteria (33)
	Riboviria (6)
	other sequences (3)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (84)
	ELECTRON CRYSTALLOGRAPHY (5)

Polymer Entity Type

	Protein (88)
	DNA (7)
	RNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (35)
	2.0 - 2.5 (26)
	2.5 - 3.0 (18)
	3.0 - 3.5 (5)
	3.5 - 4.0 (1)
	> 4.5 (1)

Release Date

	1975 - 1979 (1)
	1995 - 1999 (4)
	2000 - 2004 (6)
	2005 - 2009 (21)
	2010 - 2014 (19)
	2015 - 2019 (20)
	2020 - 2024 (18)

Enzyme Classification Name

	Oxidoreductases (22)
	Lyases (10)
	Hydrolases (12)
	Transferases (9)
	Ligases (3)

Membrane Protein Annotation

	PDBTM (5)
	MemProtMD (4)
	OPM (2)
	mpstruc (2)

Symmetry Type

	Dihedral (50)
	Cyclic (24)
	Asymmetric (23)

SCOP Classification

	Alpha and beta proteins (a/b) (42)
	All beta proteins (8)
	Artifacts (8)
	All alpha proteins (6)
	Multi-domain proteins (alpha and beta) (5)
	Alpha and beta proteins (a+b) (5)
	Membrane and cell surface proteins and peptides (3)
	Small proteins (1)

AllSelected

1 to 25 of 89 Structures

Page 1 of 4

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1AIE \| pdb_00001aie	Download File View File

P53 TETRAMERIZATION DOMAIN CRYSTAL STRUCTURE

Mittl, P.R.E., Chene, P., Gruetter, M.G.

(1998) Acta Crystallogr D Biol Crystallogr 54: 86-89

Released	1997-06-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	P53 (protein)

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1BUC \| pdb_00001buc	Download File View File

THREE-DIMENSIONAL STRUCTURE OF BUTYRYL-COA DEHYDROGENASE FROM MEGASPHAERA ELSDENII

Djordjevic, S., Pace, C.P., Stankovich, M.T., Kim, J.J.P.

(1995) Biochemistry 34: 2163-2171

Released	1995-04-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Megasphaera elsdenii
Macromolecule	BUTYRYL-COA DEHYDROGENASE (protein)
Unique Ligands	CAA, FAD

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1C26 \| pdb_00001c26	Download File View File

CRYSTAL STRUCTURE OF P53 TETRAMERIZATION DOMAIN

Jeffrey, P.D., Gorina, S., Pavletich, N.P.

(1995) Science 267: 1498-1502

Released	1999-07-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	P53 TUMOR SUPPRESSOR (protein)

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1GYL \| pdb_00001gyl	Download File View File

INVOLVEMENT OF TYR24 AND TRP108 IN SUBSTRATE BINDING AND SUBSTRATE SPECIFICITY OF GLYCOLATE OXIDASE

Lindqvist, Y., Stenberg, K.

(1995) Eur J Biochem 228: 408-416

Released	1995-03-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Spinacia oleracea
Macromolecule	GLYCOLATE OXIDASE (protein)
Unique Ligands	FMN

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1H2C \| pdb_00001h2c	Download File View File

Ebola virus matrix protein VP40 N-terminal domain in complex with RNA (High-resolution VP40[55-194] variant).

Gomis-Ruth, F.X., Dessen, A., Bracher, A., Klenk, H.D., Weissenhorn, W.

(2003) Structure 11: 423

Released	2003-04-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Ebola virus sp. Escherichia coli
Macromolecule	MATRIX PROTEIN VP40 (protein) 5'-R(UPGP*AP)-3' (nucleic acid)

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1HRB \| pdb_00001hrb	Download File View File

ATOMIC MODELS FOR THE POLYPEPTIDE BACKBONES OF MYOHEMERYTHRIN AND HEMERYTHRIN

Hendrickson, W.A., Ward, K.B.

(1975) Biochem Biophys Res Commun 66: 1349-1356

Released	1978-09-28
Method	X-RAY DIFFRACTION 5.5 Å
Organisms	Phascolopsis gouldii
Macromolecule	HEMERYTHRIN B (protein)
Unique Ligands	FE

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1N0H \| pdb_00001n0h	Download File View File

Crystal Structure of Yeast Acetohydroxyacid Synthase in Complex with a Sulfonylurea Herbicide, Chlorimuron Ethyl

Pang, S.S., Guddat, L.W., Duggleby, R.G.

(2003) J Biological Chem 278: 7639-7644

Released	2003-01-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Acetolactate synthase (protein)
Unique Ligands	AYD, CIE, DTT, FAD, K, MG, TPP

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1SOR \| pdb_00001sor	Download File View File

Aquaporin-0 membrane junctions reveal the structure of a closed water pore

Gonen, T., Sliz, P., Kistler, J., Cheng, Y., Walz, T.

(2004) Nature 429: 193-197

Released	2004-05-11
Method	ELECTRON CRYSTALLOGRAPHY 3 Å
Organisms	Ovis aries
Macromolecule	Aquaporin-0 (protein)

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1T9A \| pdb_00001t9a	Download File View File

Crystal structure of yeast acetohydroxyacid synthase in complex with a sulfonylurea herbicide, tribenuron methyl

McCourt, J.A., Pang, S.S., Guddat, L.W., Duggleby, R.G.

(2005) Biochemistry 44: 2330-2338

Released	2004-12-21
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Acetolactate synthase, mitochondrial (protein)
Unique Ligands	1TB, FAD, K, MG, P23, YF3, YF4

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1T9B \| pdb_00001t9b	Download File View File

Crystal structure of yeast acetohydroxyacid synthase in complex with a sulfonylurea herbicide, chlorsulfuron

McCourt, J.A., Pang, S.S., Guddat, L.W., Duggleby, R.G.

(2005) Biochemistry 44: 2330-2338

Released	2004-12-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Acetolactate synthase, mitochondrial (protein)
Unique Ligands	1CS, FAD, K, MG, NSP, P22, P25, YF3

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1T9C \| pdb_00001t9c	Download File View File

Crystal Structure Of Yeast Acetohydroxyacid Synthase In Complex With A Sulfonylurea Herbicide, Sulfometuron methyl

McCourt, J.A., Pang, S.S., Guddat, L.W., Duggleby, R.G.

(2005) Biochemistry 44: 2330-2338

Released	2004-12-21
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Acetolactate synthase, mitochondrial (protein)
Unique Ligands	1SM, FAD, K, MG, P22, P23

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2B0L \| pdb_00002b0l	Download File View File

C-terminal DNA binding domain of transcriptional pleiotropic repressor CodY.

Levdikov, V.M., Blagova, E., Joseph, P., Sonenshein, A.L., Wilkinson, A.J.

(2006) J Biological Chem 281: 11366-11373

Released	2006-02-21
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bacillus subtilis
Macromolecule	GTP-sensing transcriptional pleiotropic repressor codY (protein)

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2B6O \| pdb_00002b6o	Download File View File

Electron crystallographic structure of lens Aquaporin-0 (AQP0) (lens MIP) at 1.9A resolution, in a closed pore state

Gonen, T., Cheng, Y., Sliz, P., Hiroaki, Y., Fujiyoshi, Y., Harrison, S.C., Walz, T.

(2005) Nature 438: 633-638

Released	2005-12-06
Method	ELECTRON CRYSTALLOGRAPHY 1.9 Å
Organisms	Ovis aries
Macromolecule	Lens fiber major intrinsic protein (protein)
Unique Ligands	MC3

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2E4L \| pdb_00002e4l	Download File View File

Thermodynamic and Structural Analysis of Thermolabile RNase HI from Shewanella oneidensis MR-1

Tadokoro, T., You, D.J., Chon, H., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.

(2007) Biochemistry 46: 7460-7468

Released	2007-05-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Shewanella oneidensis MR-1
Macromolecule	Ribonuclease HI (protein)

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2H01 \| pdb_00002h01	Download File View File

PY00414- Plasmodium yoelii thioredoxin peroxidase I

Artz, J., Qiu, W., Min, J.R., Dong, A., Lew, J., Melone, M., Alam, Z., Weigelt, J., Sundstrom, M., Edwards, A.M., Arrowsmith, C.H., Bochkarev, A., Hui, R., Structural Genomics Consortium (SGC)

To be published

Released	2006-05-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Plasmodium yoelii
Macromolecule	2-CYS PEROXIREDOXIN (protein)

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2H31 \| pdb_00002h31	Download File View File

Crystal structure of human PAICS, a bifunctional carboxylase and synthetase in purine biosynthesis

Li, S.-X., Tong, Y.-P., Xie, X.-C., Li, S.-G., Bi, R.-C.

(2007) J Mol Biology 366: 1603-1614

Released	2007-01-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Multifunctional protein ADE2 (protein)
Unique Ligands	CO2

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2HMT \| pdb_00002hmt	Download File View File

Diamond-shaped octameric ring structure of an RCK domain with NADH bound

Albright, R.A., Morais-Cabral, J.H.

(2006) Cell 126: 1147-1159

Released	2006-09-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus subtilis
Macromolecule	YuaA protein (protein)
Unique Ligands	NAI

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2HMU \| pdb_00002hmu	Download File View File

Diamond-shaped octameric ring structure of an RCK domain with ATP bound

Albright, R.A., Morais-Cabral, J.H.

(2006) Cell 126: 1147-1159

Released	2006-09-26
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Bacillus subtilis
Macromolecule	YuaA protein (protein)
Unique Ligands	ATP

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2HMV \| pdb_00002hmv	Download File View File

Diamond-shaped octameric ring structure of an RCK domain with ADP bound

Albright, R.A., Morais-Cabral, J.H.

(2006) Cell 126: 1147-1159

Released	2006-09-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus subtilis
Macromolecule	YuaA protein (protein)
Unique Ligands	ADP

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2PP0 \| pdb_00002pp0	Download File View File

Crystal structure of L-talarate/galactarate dehydratase from Salmonella typhimurium LT2

Fedorov, A.A., Fedorov, E.V., Yew, W.S., Gerlt, J.A., Almo, S.C.

(2007) Biochemistry 46: 9564-9577

Released	2007-08-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	L-talarate/Galactarate Dehydratase (protein)
Unique Ligands	GOL

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2PP3 \| pdb_00002pp3	Download File View File

Crystal structure of L-talarate/galactarate dehydratase mutant K197A liganded with Mg and L-glucarate

Fedorov, A.A., Fedorov, E.V., Yew, W.S., Gerlt, J.A., Almo, S.C.

(2007) Biochemistry 46: 9564-9577

Released	2007-08-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	L-talarate/galactarate dehydratase (protein)
Unique Ligands	LGT, MG

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2QUI \| pdb_00002qui	Download File View File

Crystal structures of human tryptophanyl-tRNA synthetase in complex with Tryptophanamide and ATP

Shen, N., Ding, J.P.

(2008) Nucleic Acids Res 36: 1288-1299

Released	2008-04-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Tryptophanyl-tRNA synthetase (protein)
Unique Ligands	ATP, LTN, MG

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2QUJ \| pdb_00002quj	Download File View File

Crystal structures of human tryptophanyl-tRNA synthetase in complex with TrpAMP

Shen, N., Ding, J.P.

(2008) Nucleic Acids Res 36: 1288-1299

Released	2008-04-29
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Homo sapiens
Macromolecule	Tryptophanyl-tRNA synthetase (protein)
Unique Ligands	CL, GOL, TRP, TYM

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2R8T \| pdb_00002r8t	Download File View File

Crystal structure of the fructose 1,6-bisphosphatase GlpX from E.coli in the complex with fructose 1,6-bisphosphate

Lunin, V.V., Skarina, T., Brown, G., Yakunin, A., Edwards, A.M., Savchenko, A.

To be published

Released	2008-08-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Fructose-1,6-bisphosphatase class II glpX (protein)
Unique Ligands	FBP, UNX