6ZRI

Crystal structure of OXA-10loop24 in complex with meropenem


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.169 
  • R-Value Observed: 0.171 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Mechanistic insights into carbapenem hydrolysis by OXA-48 and the OXA10-derived hybrids OXA-10 loop24 and loop48

Tassone, G.Di Pisa, F.Benvenuti, M.De Luca, F.Pozzi, C.Mangani, S.Docquier, J.D.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Beta-lactamaseA, B, C, D243Escherichia coliMutation(s): 0 
Gene Names: blaOXA-10oxa-10BK373_28375CQP61_30695E4K55_27185FORC82_p097GII67_09965blaoxa-10G5603_26575
EC: 3.5.2.6
UniProt
Find proteins for Q7BNC2 (Escherichia coli)
Explore Q7BNC2 
Go to UniProtKB:  Q7BNC2
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
DWZ
Query on DWZ

Download Ideal Coordinates CCD File 
G [auth A], K [auth B], P [auth C], S [auth D](2S,3R,4S)-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid
C17 H27 N3 O5 S
UUIYVKJXUXGPKB-VGWSNGFZSA-N
 Ligand Interaction
EDO
Query on EDO

Download Ideal Coordinates CCD File 
E [auth A] , F [auth A] , H [auth A] , I [auth A] , J [auth B] , L [auth B] , M [auth B] , N [auth B] , 
E [auth A],  F [auth A],  H [auth A],  I [auth A],  J [auth B],  L [auth B],  M [auth B],  N [auth B],  O [auth C],  Q [auth D],  R [auth D],  T [auth D]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
KCX
Query on KCX
A, B, C, DL-PEPTIDE LINKINGC7 H14 N2 O4LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.169 
  • R-Value Observed: 0.171 
  • Space Group: P 32
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 80.64α = 90
b = 80.64β = 90
c = 152.29γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
iMOSFLMdata reduction
SCALAdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-07-21
    Type: Initial release