Endothiapepsin structure obtained at 100K with fragment BTB09871 bound
Engilberge, S., Huang, C.-Y., Smith, K.M.L., Eris, D., Wojdyla, J.A., Olieric, V., Leonarski, F., Sharpe, M., Wang, M.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Endothiapepsin | 330 | Cryphonectria parasitica | Mutation(s): 0  EC: 3.4.23.22 | ![]() | |
UniProt | |||||
Find proteins for P11838 (Cryphonectria parasitica) Explore P11838  Go to UniProtKB:  P11838 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P11838 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
U1E (Subject of Investigation/LOI) Query on U1E | B [auth A] | ~{N}1,~{N}1,~{N}8,~{N}8-tetramethylnaphthalene-1,8-diamine C14 H18 N2 GJFNRSDCSTVPCJ-UHFFFAOYSA-N | |||
PEG Query on PEG | D [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
DMS Query on DMS | AA [auth A] BA [auth A] C [auth A] CA [auth A] DA [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N | |||
CL Query on CL | EA [auth A], FA [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 45.281 | α = 90 |
b = 73.727 | β = 109.74 |
c = 53.042 | γ = 90 |
Software Name | Purpose |
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XDS | data reduction |
PHASER | phasing |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
Aimless | data scaling |
Funding Organization | Location | Grant Number |
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Swiss National Science Foundation | Switzerland | 200021_182369 |