7RJA

Complex III2 from Candida albicans, inhibitor free


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Rieske head domain dynamics and indazole-derivative inhibition of Candida albicans complex III

Di Trani, J.M.Zhongle, L.Whitesell, L.Brzezinski, P.Cowen, L.E.Rubinstein, J.L.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquinol--cytochrome-c reductase subunitA, J439Candida albicans SC5314Mutation(s): 0 
Gene Names: orf19.4016CAALFM_C505230CA
UniProt
Find proteins for A0A1D8PP59 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome bB [auth K], K [auth T]387Candida albicans SC5314Mutation(s): 0 
Gene Names: COBCYTBCM_00330WCaalfMp11
Membrane Entity: Yes 
UniProt
Find proteins for P0C8L0 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquinol--cytochrome-c reductase catalytic subunitC [auth D], L [auth N]288Candida albicans SC5314Mutation(s): 0 
Gene Names: CYT1orf19.3527CAALFM_C204950CA
Membrane Entity: Yes 
UniProt
Find proteins for A0A1D8PHA3 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome b-c1 complex subunit 7D [auth G], M [auth Q]127Candida albicans SC5314Mutation(s): 0 
Gene Names: QCR7orf19.5629CAALFM_C603400CA
Membrane Entity: Yes 
UniProt
Find proteins for Q5ABS1 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquinol--cytochrome-c reductase subunit 8E [auth F], N [auth P]95Candida albicans SC5314Mutation(s): 0 
Gene Names: QCR8orf19.4490.2CAALFM_C204590CA
Membrane Entity: Yes 
UniProt
Find proteins for A0A1D8PHA2 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquinol--cytochrome-c reductase subunit 6F [auth H], O [auth R]135Candida albicans SC5314Mutation(s): 0 
Gene Names: orf19.913.2CAALFM_C304080WA
Membrane Entity: Yes 
UniProt
Find proteins for A0A1D8PJT8 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquinol--cytochrome-c reductase subunit 9G [auth I], P [auth S]65Candida albicans SC5314Mutation(s): 0 
Gene Names: QCR9orf19.2707.1CAALFM_C402890CA
Membrane Entity: Yes 
UniProt
Find proteins for A0A1D8PLP3 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome b-c1 complex subunit Rieske, mitochondrialH [auth C], Q [auth M]213Candida albicans SC5314Mutation(s): 0 
Gene Names: RIP1orf19.5893CAALFM_C304430WA
EC: 7.1.1.8
Membrane Entity: Yes 
UniProt
Find proteins for A0A1D8PJX3 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome b-c1 complex subunit 2, mitochondrialI [auth B], R [auth L]374Candida albicans SC5314Mutation(s): 0 
Gene Names: QCR2CAALFM_C503350WACaO19.10167CaO19.2644
Membrane Entity: Yes 
UniProt
Find proteins for P83782 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
U10 (Subject of Investigation/LOI)
Query on U10

Download Ideal Coordinates CCD File 
AA [auth T], BA [auth T], U [auth K], V [auth K]UBIQUINONE-10
C59 H90 O4
ACTIUHUUMQJHFO-UPTCCGCDSA-N
 Ligand Interaction
HEC (Subject of Investigation/LOI)
Query on HEC

Download Ideal Coordinates CCD File 
CA [auth N], W [auth D]HEME C
C34 H34 Fe N4 O4
HXQIYSLZKNYNMH-LJNAALQVSA-N
 Ligand Interaction
HEM (Subject of Investigation/LOI)
Query on HEM

Download Ideal Coordinates CCD File 
S [auth K], T [auth K], Y [auth T], Z [auth T]PROTOPORPHYRIN IX CONTAINING FE
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
FES
Query on FES

Download Ideal Coordinates CCD File 
DA [auth M], X [auth C]FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health Research (CIHR)CanadaPJT162186
Canadian Institutes of Health Research (CIHR)CanadaFDN154288
Knut and Alice Wallenberg FoundationSweden2019.0043
Swedish Research CouncilSweden2018-04619
Canada Research ChairsCanada--

Revision History  (Full details and data files)

  • Version 1.0: 2021-09-15
    Type: Initial release