7RJE

Complex III2 from Candida albicans, Inz-5 bound


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Rieske head domain dynamics and indazole-derivative inhibition of Candida albicans complex III

Di Trani, J.M.Zhongle, L.Whitesell, L.Brzezinski, P.Cowen, L.E.Rubinstein, J.L.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome bA [auth K], B [auth T]387Candida albicans SC5314Mutation(s): 0 
Gene Names: COBCYTBCM_00330WCaalfMp11
Membrane Entity: Yes 
UniProt
Find proteins for P0C8L0 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquinol--cytochrome-c reductase subunitC [auth A], J [auth E]439Candida albicans SC5314Mutation(s): 0 
Gene Names: orf19.4016CAALFM_C505230CA
UniProt
Find proteins for A0A1D8PP59 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome b-c1 complex subunit 2, mitochondrialD [auth B], K [auth L]374Candida albicans SC5314Mutation(s): 0 
Gene Names: QCR2CAALFM_C503350WACaO19.10167CaO19.2644
Membrane Entity: Yes 
UniProt
Find proteins for P83782 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquinol--cytochrome-c reductase catalytic subunitE [auth D], L [auth N]288Candida albicans SC5314Mutation(s): 0 
Gene Names: CYT1orf19.3527CAALFM_C204950CA
Membrane Entity: Yes 
UniProt
Find proteins for A0A1D8PHA3 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome b-c1 complex subunit 7F [auth G], M [auth P]127Candida albicans SC5314Mutation(s): 0 
Gene Names: QCR7orf19.5629CAALFM_C603400CA
Membrane Entity: Yes 
UniProt
Find proteins for Q5ABS1 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquinol--cytochrome-c reductase subunit 8G [auth F], N [auth O]95Candida albicans SC5314Mutation(s): 0 
Gene Names: QCR8orf19.4490.2CAALFM_C204590CA
Membrane Entity: Yes 
UniProt
Find proteins for A0A1D8PHA2 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquinol--cytochrome-c reductase subunit 6H, O [auth Q]135Candida albicans SC5314Mutation(s): 0 
Gene Names: orf19.913.2CAALFM_C304080WA
Membrane Entity: Yes 
UniProt
Find proteins for A0A1D8PJT8 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquinol--cytochrome-c reductase subunit 9I, P [auth R]65Candida albicans SC5314Mutation(s): 0 
Gene Names: QCR9orf19.2707.1CAALFM_C402890CA
Membrane Entity: Yes 
UniProt
Find proteins for A0A1D8PLP3 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome b-c1 complex subunit Rieske, mitochondrialQ [auth C], R [auth M]213Candida albicans SC5314Mutation(s): 0 
Gene Names: RIP1orf19.5893CAALFM_C304430WA
EC: 7.1.1.8
Membrane Entity: Yes 
UniProt
Find proteins for A0A1D8PJX3 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HEC (Subject of Investigation/LOI)
Query on HEC

Download Ideal Coordinates CCD File 
Y [auth D], Z [auth N]HEME C
C34 H34 Fe N4 O4
HXQIYSLZKNYNMH-LJNAALQVSA-N
 Ligand Interaction
HEM (Subject of Investigation/LOI)
Query on HEM

Download Ideal Coordinates CCD File 
S [auth K], T [auth K], V [auth T], W [auth T]PROTOPORPHYRIN IX CONTAINING FE
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
ZL5 (Subject of Investigation/LOI)
Query on ZL5

Download Ideal Coordinates CCD File 
U [auth K], X [auth T]3-[2-fluoro-5-(trifluoromethyl)phenyl]-7-methyl-1-[(2-methyl-2H-tetrazol-5-yl)methyl]-1H-indazole
C18 H14 F4 N6
MMEFXWUINPSTPN-UHFFFAOYSA-N
 Ligand Interaction
FES
Query on FES

Download Ideal Coordinates CCD File 
AA [auth C], BA [auth M]FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health Research (CIHR)CanadaPJT162186
Canadian Institutes of Health Research (CIHR)CanadaFDN154288
Knut and Alice Wallenberg FoundationSweden2019.0043
Swedish Research CouncilSweden2018-04619
Canada Research ChairsCanada--

Revision History  (Full details and data files)

  • Version 1.0: 2021-09-15
    Type: Initial release