8KG1

Crystal structure of the cargo cysteine desulfurase from Mycobacterium smegmatis

PDB DOI: https://doi.org/10.2210/pdb8KG1/pdb

Classification: TRANSFERASE
Organism(s): Mycolicibacterium smegmatis MC2 155
Expression System: Mycolicibacterium smegmatis MC2 155
Mutation(s): No

Deposited: 2023-08-17 Released: 2024-11-20
Deposition Author(s): Liu, X., Tang, Y., Liu, Y., Ma, M., Gao, Y.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.185
R-Value Work: 0.149
R-Value Observed: 0.151

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of the cargo cysteine desulfurase from Mycobacterium smegmatis

Liu, X., Tang, Y.

To be published.

Macromolecule Content

Total Structure Weight: 93.05 kDa
Atom Count: 6,774
Modelled Residue Count: 810
Deposited Residue Count: 852
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
cysteine desulfurase	A, B	426	Mycolicibacterium smegmatis MC2 155	Mutation(s): 0 Gene Names: MSMEI_4425 EC: 2.8.1.7
UniProt
Find proteins for I7GDP6 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)) Explore I7GDP6 Go to UniProtKB: I7GDP6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	I7GDP6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
LLP Query on LLP	A, B	L-PEPTIDE LINKING	C₁₄ H₂₂ N₃ O₇ P		LYS

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.185
R-Value Work: 0.149
R-Value Observed: 0.151
Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 112.092	α = 90
b = 112.092	β = 90
c = 120.813	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling
HKL-2000	data reduction
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-11-20

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32171259
National Natural Science Foundation of China (NSFC)	China	32201033

Revision History (Full details and data files)

Version 1.0: 2024-11-20
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.