7W4N | pdb_00007w4n

Deactive state CI from Q1-NADH dataset, Subclass 5

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HA [auth j]SCOP2B SuperfamilyNADH-quinone oxidoreductase, subunit 11-like 8106932 3002200 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyNADH-ubiquinone oxidoreductase-like 8053975 3002258 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyThioredoxin-like 8106790 3000031 SCOP2B (2022-06-29)
P [auth Q]SCOP2B SuperfamilyHydB/Nqo4-like 8085733 3001849 SCOP2B (2022-06-29)
R [auth T]SCOP2B SuperfamilyRubredoxin-like 8091048 3001257 SCOP2B (2022-06-29)
IA [auth k]SCOP2B SuperfamilyNADH-quinone oxidoreductase, subunit 11-like 8098766 3002200 SCOP2B (2022-06-29)
PA [auth s]SCOP2B SuperfamilyAntiporter subunits half-channel-like 8054145 3002280 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyThioredoxin-like 8065219 3000031 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
G [auth H]ETC_C1_NDUFA5e7w4nH1 A: extended segmentsX: FATC domain (From Topology)H: FATC domain (From Topology)T: FATC domainF: ETC_C1_NDUFA5ECOD (1.6)
EA [auth g]NDUF_C2e7w4ng1 A: extended segmentsX: Mitochondrial complex I, B14.5b subunit (From Topology)H: Mitochondrial complex I, B14.5b subunit (From Topology)T: Mitochondrial complex I, B14.5b subunitF: NDUF_C2ECOD (1.6)
HA [auth j]Oxidored_q4e7w4nj1 A: extended segmentsX: NADH-quinone oxidoreductase subunit A (From Topology)H: NADH-quinone oxidoreductase subunit A (From Topology)T: NADH-quinone oxidoreductase subunit AF: Oxidored_q4ECOD (1.6)
NA [auth p]Complex1_LYRe7w4np1 A: alpha bundlesX: LYR protein (From Topology)H: LYR protein (From Topology)T: LYR proteinF: Complex1_LYRECOD (1.6)
QA [auth u]CHCHe7w4nu1 A: few secondary structure elementsX: p8-MTCP1-related (From Topology)H: p8-MTCP1-related (From Topology)T: p8-MTCP1-relatedF: CHCHECOD (1.6)
ANADH_4Fe-4Se7w4nA2 A: alpha bundlesX: Bromodomain-likeH: Nqo1C-terminal domain-like (From Topology)T: Nqo1C-terminal domain-likeF: NADH_4Fe-4SECOD (1.6)
ASLBBe7w4nA1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Nqo1 middle domain-likeF: SLBBECOD (1.6)
AComplex1_51Ke7w4nA3 A: a/b three-layered sandwichesX: Nqo1 FMN-binding domain-like (From Topology)H: Nqo1 FMN-binding domain-like (From Topology)T: Nqo1 FMN-binding domain-likeF: Complex1_51KECOD (1.6)
K [auth L]ETC_C1_NDUFA4e7w4nL1 A: a+b two layersX: Putative oxidoreductase (From Topology)H: Putative oxidoreductase (From Topology)T: Putative oxidoreductaseF: ETC_C1_NDUFA4ECOD (1.6)
L [auth M]PRK09129e7w4nM5 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PRK09129ECOD (1.6)
L [auth M]Fer2_4e7w4nM6 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Fer2_4ECOD (1.6)
L [auth M]Molybdop_Fe4S4_1e7w4nM1 A: a+b two layersX: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology)H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology)T: Formate dehydrogenase/DMSO reductase, domain 1F: Molybdop_Fe4S4_1ECOD (1.6)
L [auth M]Molybdopterin_2nde7w4nM2 A: a/b three-layered sandwichesX: Rossmann-likeH: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology)T: Formate dehydrogenase/DMSO reductase, domains 2 and 3F: Molybdopterin_2ndECOD (1.6)
L [auth M]Molybdopterin_1ste7w4nM3 A: a/b three-layered sandwichesX: Rossmann-likeH: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology)T: Formate dehydrogenase/DMSO reductase, domains 2 and 3F: Molybdopterin_1stECOD (1.6)
L [auth M]NADH-G_4Fe-4S_3e7w4nM4 A: extended segmentsX: iron-sulfur center-binding helical hairpin (From Topology)H: iron-sulfur center-binding helical hairpin (From Topology)T: iron-sulfur center-binding helical hairpinF: NADH-G_4Fe-4S_3ECOD (1.6)
M [auth N]NDUFA12e7w4nN1 A: a+b three layersX: Mitochondrial complex I, B17.2 subunit (From Topology)H: Mitochondrial complex I, B17.2 subunit (From Topology)T: Mitochondrial complex I, B17.2 subunitF: NDUFA12ECOD (1.6)
N [auth O]2Fe-2S_thioredx_Ne7w4nO1 A: alpha bundlesX: NQO2 helical bundle domain (From Topology)H: NQO2 helical bundle domain (From Topology)T: NQO2 helical bundle domainF: 2Fe-2S_thioredx_NECOD (1.6)
N [auth O]2Fe-2S_thioredx_Ce7w4nO2 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: 2Fe-2S_thioredx_CECOD (1.6)
O [auth P]Complex1_30kDae7w4nP1 A: a+b two layersX: Nqo5-likeH: Nqo5-like (From Topology)T: Nqo5-likeF: Complex1_30kDaECOD (1.6)
Q [auth S]MWFEe7w4nS1 A: extended segmentsX: Mitochondrial complex I, MWFE subunit (From Topology)H: Mitochondrial complex I, MWFE subunit (From Topology)T: Mitochondrial complex I, MWFE subunitF: MWFEECOD (1.6)
R [auth T]zf-CHCCe7w4nT1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Cytochrome c oxidase Subunit FF: zf-CHCCECOD (1.6)
S [auth U]NADHdh_A3e7w4nU1 A: extended segmentsX: Mitochondrial complex I, B9 subunit (From Topology)H: Mitochondrial complex I, B9 subunit (From Topology)T: Mitochondrial complex I, B9 subunitF: NADHdh_A3ECOD (1.6)
BFer4_21_1e7w4nB1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_21_1ECOD (1.6)
U [auth W]GRIM-19e7w4nW1 A: extended segmentsX: Mitochondrial complex I, B16.6 subunit (From Topology)H: Mitochondrial complex I, B16.6 subunit (From Topology)T: Mitochondrial complex I, B16.6 subunitF: GRIM-19ECOD (1.6)
W [auth Y]NADH_B2e7w4nY1 A: extended segmentsX: Mitochondrial complex I, AGGG subunit (From Topology)H: Mitochondrial complex I, AGGG subunit (From Topology)T: Mitochondrial complex I, AGGG subunitF: NADH_B2ECOD (1.6)
Y [auth a]NDUF_B5e7w4na1 A: extended segmentsX: Mitochondrial complex I, SGDH subunit (From Topology)H: Mitochondrial complex I, SGDH subunit (From Topology)T: Mitochondrial complex I, SGDH subunitF: NDUF_B5ECOD (1.6)
BA [auth d]NDUFB10e7w4nd1 A: alpha bundlesX: Mitochondrial complex I, PDSW subunit (From Topology)H: Mitochondrial complex I, PDSW subunit (From Topology)T: Mitochondrial complex I, PDSW subunitF: NDUFB10ECOD (1.6)
DA [auth f]NADH_dh_m_C1e7w4nf1 A: extended segmentsX: Mitochondrial complex I, KFYI subunit (From Topology)H: Mitochondrial complex I, KFYI subunit (From Topology)T: Mitochondrial complex I, KFYI subunitF: NADH_dh_m_C1ECOD (1.6)
COxidored_q6e7w4nC1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: Oxidored_q6ECOD (1.6)
FA [auth h]Ndufs5e7w4nh1 A: alpha bundlesX: cytochrome bc1 complex 11 kDa protein-likeH: CHCH domain (From Topology)T: CHCH domainF: Ndufs5ECOD (1.6)
GA [auth i]Proton_antipo_Me7w4ni1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit L (NuoL)-relatedF: Proton_antipo_MECOD (1.6)
IA [auth k]Oxidored_q2e7w4nk1 A: alpha complex topologyX: NADH-quinone oxidoreductase subunit K (From Topology)H: NADH-quinone oxidoreductase subunit K (From Topology)T: NADH-quinone oxidoreductase subunit KF: Oxidored_q2ECOD (1.6)
JA [auth l]Proton_antipo_Me7w4nl1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit L (NuoL)-relatedF: Proton_antipo_MECOD (1.6)
KA [auth m]Oxidored_q3_1e7w4nm1 A: extended segmentsX: NADH-quinone oxidoreductase subunit J (From Topology)H: NADH-quinone oxidoreductase subunit J (From Topology)T: NADH-quinone oxidoreductase subunit JF: Oxidored_q3_1ECOD (1.6)
LA [auth n]NADH_oxidorede7w4nn1 A: extended segmentsX: Mitochondrial complex I, MNLL subunit (From Topology)H: Mitochondrial complex I, MNLL subunit (From Topology)T: Mitochondrial complex I, MNLL subunitF: NADH_oxidoredECOD (1.6)
D [auth E]Complex1_LYRe7w4nE1 A: alpha bundlesX: LYR protein (From Topology)H: LYR protein (From Topology)T: LYR proteinF: Complex1_LYRECOD (1.6)
OA [auth r]Proton_antipo_Me7w4nr1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit L (NuoL)-relatedF: Proton_antipo_MECOD (1.6)
PA [auth s]NADHdhe7w4ns1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit 8 (Nqo8)-relatedF: NADHdhECOD (1.6)
SA [auth w]dNK_2e7w4nw1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: dNK_2ECOD (1.6)
E [auth F]L51_S25_CI-B8e7w4nF1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: L51_S25_CI-B8ECOD (1.6)
F [auth G]PP-bindinge7w4nG1 A: alpha bundlesX: ACP-likeH: Acyl-carrier protein (ACP) (From Topology)T: Acyl-carrier protein (ACP)F: PP-bindingECOD (1.6)
V [auth X]PP-bindinge7w4nX1 A: alpha bundlesX: ACP-likeH: Acyl-carrier protein (ACP) (From Topology)T: Acyl-carrier protein (ACP)F: PP-bindingECOD (1.6)
I [auth J]NAD_binding_10e7w4nJ1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: NAD_binding_10ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
HA [auth j]1.20.58.1610 Mainly Alpha Up-down Bundle Methane Monooxygenase Hydroxylase Chain G, domain 1CATH (utative)
A3.40.50.11540 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NADH-ubiquinone oxidoreductase 51kDa subunitCATH (utative)
A3.10.20.600 Alpha Beta Roll Ubiquitin-like (UB roll) CATH (utative)
A1.20.1440.230 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainCATH (utative)
K [auth L]3.30.160.190 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain atu1810 like domainCATH (utative)
N [auth O]1.10.10.1590 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A NADH-quinone oxidoreductase subunit ECATH (utative)
N [auth O]3.40.30.10 Alpha Beta 3-Layer(aba) Sandwich Glutaredoxin GlutaredoxinCATH (utative)
R [auth T]2.60.260.40 Mainly Beta Sandwich HSP40/DNAj peptide-binding domain q5lls5 like domainsCATH (utative)
B3.30.70.3270 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
C3.40.50.12280 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (utative)
IA [auth k]1.10.287.3510 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (utative)
E [auth F]3.40.30.10 Alpha Beta 3-Layer(aba) Sandwich Glutaredoxin GlutaredoxinCATH (utative)
F [auth G]1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein Chain ACATH (utative)
V [auth X]1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein Chain ACATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G [auth H]PF04716ETC complex I subunit conserved region (ETC_C1_NDUFA5)ETC complex I subunit conserved region- Family
PF22461SLBB domain (SLBB_2)SLBB domainThis entry represents a set of SLBB domains [5]. Domain
PF09781NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit (NDUF_B5)NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit- Family
PF01512Nuo51 FMN-binding domain (Complex1_51K)Nuo51 FMN-binding domainThis entry represents the FMN-binding domain of NADH-ubiquinone oxidoreductase 51kDa subunit from NADH:ubiquinone oxidoreductase. Domain
PF10589NADH-ubiquinone oxidoreductase-F iron-sulfur binding region (NADH_4Fe-4S)NADH-ubiquinone oxidoreductase-F iron-sulfur binding regionDomain
J [auth K]PF15880NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial (NDUFV3)NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial- Family
K [auth L]PF00361NADH:quinone oxidoreductase/Mrp antiporter, TM (Proton_antipo_M)NADH:quinone oxidoreductase/Mrp antiporter, TMThis entry includes membrane transporters and represents some 7 of potentially 14-16 TM regions. In many instances, its members forms part of complex I that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associa ...This entry includes membrane transporters and represents some 7 of potentially 14-16 TM regions. In many instances, its members forms part of complex I that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N [1]. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction [2].
Domain
K [auth L]PF00662NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus (Proton_antipo_N)NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminusThis entry represents an amino terminal extension of Pfam:PF00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in ...This entry represents an amino terminal extension of Pfam:PF00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.
Domain
K [auth L]PF04800NADH dehydrogenase ubiquinone Fe-S protein 4 (NDUS4)NADH dehydrogenase ubiquinone Fe-S protein 4- Family
L [auth M]PF00384Molybdopterin oxidoreductase (Molybdopterin)Molybdopterin oxidoreductaseDomain
L [auth M]PF22151NADH-ubiquinone oxidoreductase NDSU1/NuoG-like, 4Fe-4S domain (Fer4_NDSU1)NADH-ubiquinone oxidoreductase NDSU1/NuoG-like, 4Fe-4S domainThis entry represents the 4Fe-4S domain of NADH-ubiquinone oxidoreductase NDUFS1 from mammals and NuoG from bacteria, which are part of respiratory chain complex I [1-5]. Domain
L [auth M]PF135102Fe-2S iron-sulfur cluster binding domain (Fer2_4)2Fe-2S iron-sulfur cluster binding domainThe 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which a beta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. Th ...The 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which a beta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This cluster appears within sarcosine oxidase proteins.
Domain
L [auth M]PF09326NADH-ubiquinone oxidoreductase subunit G, C-terminal (NADH_dhqG_C)NADH-ubiquinone oxidoreductase subunit G, C-terminal- Family
L [auth M]PF22117NADH-quinone oxidoreductase subunit 3, ferredoxin-like domain (Fer4_Nqo3)NADH-quinone oxidoreductase subunit 3, ferredoxin-like domainNADH-quinone oxidoreductase subunit 3 (Nqo3) is a component of respiratory complex I. This protein is located at the peripheral arm of the complex and consists of multiple domains. This entry represents the second ferredoxin-like domain which contain ...NADH-quinone oxidoreductase subunit 3 (Nqo3) is a component of respiratory complex I. This protein is located at the peripheral arm of the complex and consists of multiple domains. This entry represents the second ferredoxin-like domain which contains Fe4-S4 cluster, one of the redox centers of the complex [1-5].
Domain
L [auth M]PF10588NADH-ubiquinone oxidoreductase-G iron-sulfur binding region (NADH-G_4Fe-4S_3)NADH-ubiquinone oxidoreductase-G iron-sulfur binding regionDomain
M [auth N]PF08040MNLL subunit (NADH_oxidored)MNLL subunit- Family
M [auth N]PF05071NADH ubiquinone oxidoreductase subunit NDUFA12 (NDUFA12)NADH ubiquinone oxidoreductase subunit NDUFA12- Family
N [auth O]PF01257Thioredoxin-like [2Fe-2S] ferredoxin (2Fe-2S_thioredx)Thioredoxin-like [2Fe-2S] ferredoxin- Family
O [auth P]PF00329Respiratory-chain NADH dehydrogenase, 30 Kd subunit (Complex1_30kDa)Respiratory-chain NADH dehydrogenase, 30 Kd subunitDomain
P [auth Q]PF00346Respiratory-chain NADH dehydrogenase, 49 Kd subunit (Complex1_49kDa)Respiratory-chain NADH dehydrogenase, 49 Kd subunit- Family
Q [auth S]PF15879NADH-ubiquinone oxidoreductase MWFE subunit (MWFE)NADH-ubiquinone oxidoreductase MWFE subunit- Family
Q [auth S]PF00146NADH dehydrogenase (NADHdh)NADH dehydrogenase- Family
R [auth T]PF10276Zinc-finger domain (zf-CHCC)Zinc-finger domainThis is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C. Domain
S [auth U]PF06747CHCH domain (CHCH)CHCH domainwe have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extende ...we have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11-kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation [2]. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit [3]. The CHCH domain was previously called DUF657 [4].
Domain
S [auth U]PF14987NADH dehydrogenase 1 alpha subcomplex subunit 3 (NADHdh_A3)NADH dehydrogenase 1 alpha subcomplex subunit 3- Family
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
T [auth V]PF05676NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7) (NDUF_B7)NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)- Family
T [auth V]PF02466Tim17/Tim22/Tim23/Pmp24 family (Tim17)Tim17/Tim22/Tim23/Pmp24 family- Family
U [auth W]PF01712Deoxynucleoside kinase (dNK)Deoxynucleoside kinaseThis family consists of various deoxynucleoside kinases cytidine EC:2.7.1.74, guanosine EC:2.7.1.113, adenosine EC:2.7.1.76 and thymidine kinase EC:2.7.1.21 (which also phosphorylates deoxyuridine and deoxycytosine.) These enzymes catalyse the prod ...This family consists of various deoxynucleoside kinases cytidine EC:2.7.1.74, guanosine EC:2.7.1.113, adenosine EC:2.7.1.76 and thymidine kinase EC:2.7.1.21 (which also phosphorylates deoxyuridine and deoxycytosine.) These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside. Using ATP and yielding ADP in the process.
Domain
U [auth W]PF06212GRIM-19 protein (GRIM-19)GRIM-19 protein- Family
W [auth Y]PF14813NADH dehydrogenase 1 beta subcomplex subunit 2 (NADH_B2)NADH dehydrogenase 1 beta subcomplex subunit 2- Family
X [auth Z]PF08122NADH-ubiquinone oxidoreductase B12 subunit family (NDUF_B12)NADH-ubiquinone oxidoreductase B12 subunit family- Family
PF01058NADH ubiquinone oxidoreductase, 20 Kd subunit (Oxidored_q6)NADH ubiquinone oxidoreductase, 20 Kd subunitDomain
D [auth E]PF05347Complex 1 protein (LYR family) (Complex1_LYR)Complex 1 protein (LYR family)- Family
D [auth E]PF10183ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) (ESSS)ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)- Family
E [auth F]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
F [auth G],
V [auth X]		PF00550Phosphopantetheine attachment site (PP-binding)Phosphopantetheine attachment siteA 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ...A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.
Domain
H [auth I]PF00361NADH:quinone oxidoreductase/Mrp antiporter, TM (Proton_antipo_M)NADH:quinone oxidoreductase/Mrp antiporter, TMThis entry includes membrane transporters and represents some 7 of potentially 14-16 TM regions. In many instances, its members forms part of complex I that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associa ...This entry includes membrane transporters and represents some 7 of potentially 14-16 TM regions. In many instances, its members forms part of complex I that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N [1]. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction [2].
Domain
H [auth I]PF07347NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a) (CI-B14_5a)NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)- Family
I [auth J]PF01370NAD dependent epimerase/dehydratase family (Epimerase)NAD dependent epimerase/dehydratase family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth H]Complex I subunit B13-
EA [auth g]NADH dehydrogenase [ubiquinone] 1 subunit C2-
HA [auth j]NADH-ubiquinone oxidoreductase chain 3
NA [auth p]NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-
QA [auth u]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
J [auth K]Complex I-9kD- -
K [auth L]NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-
L [auth M]NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
M [auth N]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12- -
N [auth O]NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
O [auth P]Complex I-30kD
P [auth Q]Complex I-49kD
Q [auth S]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1- -
R [auth T]NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial-
S [auth U]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3- -
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial -
T [auth V]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11-
U [auth W]Complex I-B16.6- -
W [auth Y]Complex I-AGGG- -
X [auth Z]Complex I-B12-
Y [auth a]Complex I-SGDH- -
Z [auth b]Complex I-B17-
AA [auth c]NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial-
BA [auth d]NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10- -
CA [auth e]NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial- -
DA [auth f]NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial- -
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial - -
FA [auth h]NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-
GA [auth i]NADH-ubiquinone oxidoreductase chain 2
IA [auth k]NADH-ubiquinone oxidoreductase chain 4L
JA [auth l]NADH-ubiquinone oxidoreductase chain 5
KA [auth m]NADH-ubiquinone oxidoreductase chain 6
LA [auth n]NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1- -
MA [auth o]NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4- -
D [auth E]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6-
OA [auth r]NADH-ubiquinone oxidoreductase chain 4
PA [auth s]NADH-ubiquinone oxidoreductase chain 1
RA [auth v]Complex I-B18 -
SA [auth w]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial-
E [auth F]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2- -
F [auth G],
V [auth X]		Acyl carrier protein
H [auth I]Complex I-B14.5a-
I [auth J]NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9, mitochondrial- - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
G [auth H]IPR006806NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5Family
EA [auth g]IPR009423NADH dehydrogenase [ubiquinone] 1 subunit C2, NDUC2Family
HA [auth j]IPR000440NADH:ubiquinone/plastoquinone oxidoreductase, chain 3Family
HA [auth j]IPR038430NADH:ubiquinone oxidoreductase, subunit 3 superfamilyHomologous Superfamily
NA [auth p]IPR033034NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9Family
NA [auth p]IPR008011Complex 1 LYR protein domainDomain
NA [auth p]IPR045292NDUFB9, LYR domainDomain
QA [auth u]IPR010625CHCHDomain
QA [auth u]IPR016680NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 8Family
IPR019575NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainDomain
IPR054765SLBB domainDomain
IPR011537NADH ubiquinone oxidoreductase, F subunitFamily
IPR001949NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved siteConserved Site
IPR037225NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamilyHomologous Superfamily
IPR037207NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamilyHomologous Superfamily
IPR011538NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domainDomain
IPR050837Complex I 51 kDa subunitFamily
J [auth K]IPR026193NADH-ubiquinone oxidoreductase flavoprotein 3Family
K [auth L]IPR038532NADH dehydrogenase ubiquinone Fe-S protein 4-like superfamilyHomologous Superfamily
K [auth L]IPR006885NADH dehydrogenase ubiquinone Fe-S protein 4 mitochondrial-likeFamily
L [auth M]IPR006963Molybdopterin oxidoreductase, 4Fe-4S domainDomain
L [auth M]IPR015405NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-likeDomain
L [auth M]IPR006656Molybdopterin oxidoreductaseDomain
L [auth M]IPR0360102Fe-2S ferredoxin-like superfamilyHomologous Superfamily
L [auth M]IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainDomain
L [auth M]IPR000283NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved siteConserved Site
L [auth M]IPR054351NADH-ubiquinone oxidoreductase, ferredoxin-like domainDomain
L [auth M]IPR010228NADH:ubiquinone oxidoreductase, subunit GFamily
L [auth M]IPR050123Prokaryotic molybdopterin-containing oxidoreductaseFamily
L [auth M]IPR019574NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur bindingDomain
M [auth N]IPR007763NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12Family
N [auth O]IPR042128NuoE domainDomain
N [auth O]IPR002023NADH-quinone oxidoreductase subunit E-likeFamily
N [auth O]IPR041921NADH-quinone oxidoreductase subunit E, N-terminalHomologous Superfamily
N [auth O]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
O [auth P]IPR037232NADH:ubiquinone oxidoreductase, 30kDa subunit superfamilyHomologous Superfamily
O [auth P]IPR001268NADH:ubiquinone oxidoreductase, 30kDa subunitDomain
O [auth P]IPR020396NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved siteConserved Site
O [auth P]IPR010218NADH dehydrogenase, subunit CFamily
P [auth Q]IPR014029NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved siteConserved Site
P [auth Q]IPR029014[NiFe]-hydrogenase, large subunitHomologous Superfamily
P [auth Q]IPR022885NAD(P)H-quinone oxidoreductase subunit D/HFamily
P [auth Q]IPR001135NADH-quinone oxidoreductase, subunit DDomain
Q [auth S]IPR017384NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex subunit 1Family
R [auth T]IPR019401Zinc finger, CHCC-typeDomain
R [auth T]IPR016668NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrialFamily
S [auth U]IPR026626NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3Family
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
IPR010226NADH-quinone oxidoreductase, chain IFamily
T [auth V]IPR039205NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11Family
U [auth W]IPR009346GRIM-19Family
W [auth Y]IPR026627NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, animal typeFamily
X [auth Z]IPR012576NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3Family
Y [auth a]IPR019173NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunitFamily
Z [auth b]IPR019174NADH dehydrogenase 1, beta subcomplex, subunit 6Family
AA [auth c]IPR008699NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8Family
AA [auth c]IPR016551NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, metazoaFamily
BA [auth d]IPR019377NADH-ubiquinone oxidoreductase, subunit 10Family
BA [auth d]IPR039993NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10Family
CA [auth e]IPR019329NADH:ubiquinone oxidoreductase, ESSS subunitFamily
DA [auth f]IPR026192NADH-ubiquinone oxidoreductase 1 subunit C1Family
IPR006138NADH-ubiquinone oxidoreductase, 20 Kd subunitFamily
IPR006137NADH:ubiquinone oxidoreductase-like, 20kDa subunitDomain
FA [auth h]IPR019342NADH:ubiquinone oxidoreductase, iron-sulphur subunit 5Family
GA [auth i]IPR010933NADH dehydrogenase subunit 2, C-terminalDomain
GA [auth i]IPR003917NADH:ubiquinone oxidoreductase, chain 2Family
GA [auth i]IPR050175Complex I Subunit 2Family
GA [auth i]IPR001750NADH:quinone oxidoreductase/Mrp antiporter, transmembrane domainDomain
IA [auth k]IPR001133NADH-ubiquinone oxidoreductase chain 4L/KFamily
IA [auth k]IPR039428NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-likeFamily
JA [auth l]IPR003945NADH-quinone oxidoreductase, chain 5-likeFamily
JA [auth l]IPR010934NADH dehydrogenase subunit 5, C-terminalDomain
JA [auth l]IPR001516NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminalDomain
JA [auth l]IPR001750NADH:quinone oxidoreductase/Mrp antiporter, transmembrane domainDomain
JA [auth l]IPR018393NADH-plastoquinone oxidoreductase, chain 5 subgroupFamily
KA [auth m]IPR050269Complex I Subunit 6Family
KA [auth m]IPR042106NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJHomologous Superfamily
KA [auth m]IPR001457NADH:ubiquinone/plastoquinone oxidoreductase, chain 6Family
LA [auth n]IPR012575NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1, NDUB1Family
MA [auth o]IPR009866NADH:ubiquinone oxidoreductase, subunit NDUFB4Family
D [auth E]IPR016488NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 6Family
D [auth E]IPR008011Complex 1 LYR protein domainDomain
D [auth E]IPR045299NDUFA6, LYR domainDomain
OA [auth r]IPR003918NADH:ubiquinone oxidoreductaseFamily
OA [auth r]IPR010227NADH-quinone oxidoreductase, chain M/4Family
OA [auth r]IPR000260NADH:ubiquinone oxidoreductase chain 4, N-terminalDomain
OA [auth r]IPR001750NADH:quinone oxidoreductase/Mrp antiporter, transmembrane domainDomain
PA [auth s]IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HFamily
PA [auth s]IPR018086NADH:ubiquinone oxidoreductase, subunit 1, conserved siteConserved Site
RA [auth v]IPR008698NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7, NDUB7Family
SA [auth w]IPR031314Deoxynucleoside kinase domainDomain
SA [auth w]IPR050566Deoxyribonucleoside KinaseFamily
SA [auth w]IPR015828NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrialFamily
SA [auth w]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth F]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
E [auth F]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
E [auth F]IPR016464NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2Family
F [auth G],
V [auth X]		IPR006162Phosphopantetheine attachment sitePTM
F [auth G],
V [auth X]		IPR009081Phosphopantetheine binding ACP domainDomain
F [auth G],
V [auth X]		IPR036736ACP-like superfamilyHomologous Superfamily
F [auth G],
V [auth X]		IPR003231Acyl carrier proteinFamily
H [auth I]IPR009947NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7Family
I [auth J]IPR051207Mitochondrial Complex I NDUFA9 SubunitFamily
I [auth J]IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
I [auth J]IPR001509NAD-dependent epimerase/dehydrataseDomain

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
P [auth Q]2MR Parent Component: ARG

RESID:  AA0067

PSI-MOD :  symmetric dimethyl-L-arginine MOD:00076